BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016667
         (889 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    70   9e-10
ref|XP_002314708.1| predicted protein [Populus trichocarpa] gi|2...    64   6e-08
ref|XP_002312512.1| predicted protein [Populus trichocarpa] gi|2...    62   1e-07
ref|XP_002309989.1| predicted protein [Populus trichocarpa] gi|2...    62   2e-07
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    62   2e-07

>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 69.7 bits (169), Expect = 9e-10
 Identities = 49/141 (34%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
 Frame = +3

Query: 420 GIMKISTDGASRGNPGIAGWRVVARN---HLIGG----LGVETSYMAECHGIIEGTRRAV 578
           G +KI+ DG++ G P       V RN   H +GG    +G  T + AE    I    +++
Sbjct: 9   GRVKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSI 68

Query: 579 EQGWKDIWIESDSQAVVYAFQSNK-VHWKFRNTWQKLKAQLNWVN--ITGTWRETNFGAD 749
           E   +DIW+E+DS+ VV AF S++ V W+ R  W    A    +    T   RE N GAD
Sbjct: 69  EYNLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGNAGAD 128

Query: 750 S*ANEGCTLACGDQRW*THRP 812
           S A  G +LA    +W +  P
Sbjct: 129 SLAKNGKSLALLTSQWWSSSP 149


>ref|XP_002314708.1| predicted protein [Populus trichocarpa] gi|222863748|gb|EEF00879.1|
           predicted protein [Populus trichocarpa]
          Length = 245

 Score = 63.5 bits (153), Expect = 6e-08
 Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
 Frame = +3

Query: 402 WFLPPMGIMKISTDGASRGNPGIAGWRVVARNHL---IGG----LGVETSYMAECHGIIE 560
           W  P    +K++ DG S+GNPG+AG   V R+HL   IGG    +G+ +S  AE   +  
Sbjct: 76  WKYPQEERIKLNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYV 135

Query: 561 GTRRAVEQGWKDIWIESDSQAVVYAFQSNKVHW-KFRNTWQKLKAQL--NW-VNITGTWR 728
           G + A ++G++ + +ESDS+ VV     + V   +  N   ++K  L  NW V     +R
Sbjct: 136 GLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYNIIMQIKGMLGRNWEVTTYHVYR 195

Query: 729 ETNFGADS*ANEGCT 773
           E N  AD  AN G T
Sbjct: 196 EANCVADWLANYGLT 210


>ref|XP_002312512.1| predicted protein [Populus trichocarpa] gi|222852332|gb|EEE89879.1|
           predicted protein [Populus trichocarpa]
          Length = 317

 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 48/131 (36%), Positives = 66/131 (50%), Gaps = 15/131 (11%)
 Frame = +3

Query: 441 DGASRGNPGIAGWRVVARN-------HLIGGLGVETSYMAECHGIIEGTRRAVEQGWKDI 599
           DGAS+GNPG AG   V RN        L  GLG+ T+ MAE   I+ G + A+E+G+  I
Sbjct: 184 DGASKGNPGQAGAGAVLRNDDGSLICRLREGLGIATNNMAEYRAILLGMKYALEKGYTKI 243

Query: 600 WIESDSQAVVYAFQSNKVHWKFRN--------TWQKLKAQLNWVNITGTWRETNFGADS* 755
            ++ DS+ V    + +   WK R+          +KLK      +I+   RE N  ADS 
Sbjct: 244 HVKGDSKLVCMQIEGS---WKARHENITNLYEEAKKLKNSFLSFHISHVPREYNSEADSQ 300

Query: 756 ANEGCTLACGD 788
           AN    LA G+
Sbjct: 301 ANLAIKLADGE 311


>ref|XP_002309989.1| predicted protein [Populus trichocarpa] gi|222852892|gb|EEE90439.1|
           predicted protein [Populus trichocarpa]
          Length = 245

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
 Frame = +3

Query: 402 WFLPPMGIMKISTDGASRGNPGIAGWRVVARNHL---IGG----LGVETSYMAECHGIIE 560
           W  P    +K++ DG S+GNPG+AG   V R+HL   IGG    +G+ +S  AE   +  
Sbjct: 76  WKYPQEERIKLNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYV 135

Query: 561 GTRRAVEQGWKDIWIESDSQAVVYAFQSNKVHW-KFRNTWQKLKAQL--NW-VNITGTWR 728
           G + A ++G++ + +ESDS+ VV     + V   +  N   ++K  L  +W V     +R
Sbjct: 136 GLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYNIIMQIKGMLGRDWEVTTYHVYR 195

Query: 729 ETNFGADS*ANEGCT 773
           E N  AD  AN G T
Sbjct: 196 EANCVADWLANYGLT 210


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 6/158 (3%)
 Frame = +3

Query: 312  GTMSNSDTILLLKLNLEPR*SRAPQILECYWFLPPMGIMKISTDGASRGNPGIAG--WRV 485
            G   +SD+ +L + ++ PR  +   I+   W  P   ++K++TDG+  G     G  +R 
Sbjct: 985  GKCLHSDSAILEEFSVSPRHRKYKDIILVLWKNPSPPLLKVNTDGSVVGGLAACGGLFRD 1044

Query: 486  VARNHLIG---GLGVETSYMAECHGIIEGTRRAVEQGWKDIWIESDSQAVVYAF-QSNKV 653
             + + L      +G+ + + AE    I     A   GW+++W+ESDS + +  F  S+ V
Sbjct: 1045 SSGSFLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTSALMIFSNSSLV 1104

Query: 654  HWKFRNTWQKLKAQLNWVNITGTWRETNFGADS*ANEG 767
             W  RN W   +     V  +    E N  AD+ AN G
Sbjct: 1105 QWLLRNRWHNAQRLGIQVISSHILHEGNRCADNLANMG 1142