BLASTX nr result

ID: Coptis24_contig00016658 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016658
         (1247 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263191.1| PREDICTED: uncharacterized protein LOC100261...   175   6e-70
emb|CBI23968.3| unnamed protein product [Vitis vinifera]              175   7e-69
ref|XP_002509467.1| conserved hypothetical protein [Ricinus comm...   171   3e-66
ref|XP_002330640.1| predicted protein [Populus trichocarpa] gi|2...   182   6e-65
ref|XP_002305794.1| predicted protein [Populus trichocarpa] gi|2...   167   2e-63

>ref|XP_002263191.1| PREDICTED: uncharacterized protein LOC100261530 [Vitis vinifera]
          Length = 309

 Score =  175 bits (443), Expect(2) = 6e-70
 Identities = 95/153 (62%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
 Frame = +1

Query: 592  IPSGAHTYLDVVHKSSTKQLEVRVVIELNFRAEFEMARASDEYTRLIGRLPEVFVGXXXX 771
            IPSG HT+LDVVH SS K+ EVRV+IELNFRAEFEMARAS+EY RLI RLPEVFVG    
Sbjct: 166  IPSGEHTFLDVVHNSSAKKGEVRVIIELNFRAEFEMARASEEYNRLIRRLPEVFVG---- 221

Query: 772  XXXXXXXXXXXXXIKILCSAAKKCMKENKMHIGPWRKHKYMQAKWFGTCER-TMSQPHFK 948
                         +KILC AAKKCMKE KMH+GPWRKH+YMQAKW  TC R T +     
Sbjct: 222  -----KVERLHTLVKILCMAAKKCMKEKKMHMGPWRKHRYMQAKWLSTCVRSTSTSSLLS 276

Query: 949  QLSDRSMKPKASMLTFDLLDMLPSLQSFTAVKV 1047
              S R  KPKASMLT DL++ LP++   TAV+V
Sbjct: 277  GDSGRLPKPKASMLTVDLMEKLPNMHC-TAVEV 308



 Score =  117 bits (292), Expect(2) = 6e-70
 Identities = 67/160 (41%), Positives = 87/160 (54%), Gaps = 2/160 (1%)
 Frame = +3

Query: 33  SGEMSVFDDMEFGFFYYSEGSWDSVSS--GTTSNDFEDDEETENSVDXXXXXXXXXXXXX 206
           +G+ +   DM FGF    EG  +S SS  G + N   DD+E +   +             
Sbjct: 26  AGQAASLSDMAFGFLEDGEGWPESFSSTGGCSENGALDDDEDDADKEKNSSSVEENKNFW 85

Query: 207 XXXXXXXXXXXXXXXXXXXXXXXXXQHQLLETTLSRTSSIESKIRQATKVALRESQLEGV 386
                                    QHQ+L TTL RTSS+E  IR ATK AL+E Q++  
Sbjct: 86  ES-----------------------QHQILHTTLCRTSSLELGIRNATKEALKEIQMDDN 122

Query: 387 VCACSRPVIGGCRNCLLQKISDHLRNAGFNSAVCKSKWRS 506
           VC C RPV+GGCR+CLL+++SD LRNAG+NSA+CKSKWRS
Sbjct: 123 VCVCLRPVVGGCRSCLLREVSDRLRNAGYNSAICKSKWRS 162


>emb|CBI23968.3| unnamed protein product [Vitis vinifera]
          Length = 275

 Score =  175 bits (443), Expect(2) = 7e-69
 Identities = 95/153 (62%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
 Frame = +1

Query: 592  IPSGAHTYLDVVHKSSTKQLEVRVVIELNFRAEFEMARASDEYTRLIGRLPEVFVGXXXX 771
            IPSG HT+LDVVH SS K+ EVRV+IELNFRAEFEMARAS+EY RLI RLPEVFVG    
Sbjct: 132  IPSGEHTFLDVVHNSSAKKGEVRVIIELNFRAEFEMARASEEYNRLIRRLPEVFVG---- 187

Query: 772  XXXXXXXXXXXXXIKILCSAAKKCMKENKMHIGPWRKHKYMQAKWFGTCER-TMSQPHFK 948
                         +KILC AAKKCMKE KMH+GPWRKH+YMQAKW  TC R T +     
Sbjct: 188  -----KVERLHTLVKILCMAAKKCMKEKKMHMGPWRKHRYMQAKWLSTCVRSTSTSSLLS 242

Query: 949  QLSDRSMKPKASMLTFDLLDMLPSLQSFTAVKV 1047
              S R  KPKASMLT DL++ LP++   TAV+V
Sbjct: 243  GDSGRLPKPKASMLTVDLMEKLPNMHC-TAVEV 274



 Score =  113 bits (283), Expect(2) = 7e-69
 Identities = 51/75 (68%), Positives = 63/75 (84%)
 Frame = +3

Query: 282 QHQLLETTLSRTSSIESKIRQATKVALRESQLEGVVCACSRPVIGGCRNCLLQKISDHLR 461
           QHQ+L TTL RTSS+E  IR ATK AL+E Q++  VC C RPV+GGCR+CLL+++SD LR
Sbjct: 54  QHQILHTTLCRTSSLELGIRNATKEALKEIQMDDNVCVCLRPVVGGCRSCLLREVSDRLR 113

Query: 462 NAGFNSAVCKSKWRS 506
           NAG+NSA+CKSKWRS
Sbjct: 114 NAGYNSAICKSKWRS 128


>ref|XP_002509467.1| conserved hypothetical protein [Ricinus communis]
            gi|223549366|gb|EEF50854.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 308

 Score =  171 bits (433), Expect(2) = 3e-66
 Identities = 90/154 (58%), Positives = 112/154 (72%), Gaps = 2/154 (1%)
 Frame = +1

Query: 592  IPSGAHTYLDVVHKSSTKQLEVRVVIELNFRAEFEMARASDEYTRLIGRLPEVFVGXXXX 771
            IPSG HT+LDV+  SS+K+ E+RV+IELNF+AEFEMA+AS+EY  L+ +LPE+FVG    
Sbjct: 164  IPSGEHTFLDVIDNSSSKKGEIRVIIELNFQAEFEMAKASEEYNSLVRKLPEIFVG---- 219

Query: 772  XXXXXXXXXXXXXIKILCSAAKKCMKENKMHIGPWRKHKYMQAKWFGTCERTM-SQPHFK 948
                         IKILC AAKKCMK+ KMH+GPWRK +YMQAKW GTCERT+ S P F 
Sbjct: 220  -----KVERLNNVIKILCLAAKKCMKQKKMHLGPWRKRRYMQAKWLGTCERTVASIPSFS 274

Query: 949  Q-LSDRSMKPKASMLTFDLLDMLPSLQSFTAVKV 1047
               S +  KPK+SMLT DLLD+LP++   TAV+V
Sbjct: 275  MGYSGKVSKPKSSMLTVDLLDLLPNMHC-TAVEV 307



 Score =  108 bits (270), Expect(2) = 3e-66
 Identities = 61/161 (37%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
 Frame = +3

Query: 42  MSVFDDMEFGFFYYSEGSWDSVSSGTTSN------DFEDDEETENSVDXXXXXXXXXXXX 203
           M  F DM FGF  + E      S  +  +      D E+DEE EN               
Sbjct: 29  MGSFSDMVFGFLEHGEDQSFQASPSSEDSYENEALDEEEDEEKENG-------------- 74

Query: 204 XXXXXXXXXXXXXXXXXXXXXXXXXXQHQLLETTLSRTSSIESKIRQATKVALRESQLEG 383
                                     QHQLL+ TL RTSS+ES IR  TK  ++E Q+ G
Sbjct: 75  ---------------GFQEDKSFWDNQHQLLQATLCRTSSLESGIRNITKETIKEIQMAG 119

Query: 384 VVCACSRPVIGGCRNCLLQKISDHLRNAGFNSAVCKSKWRS 506
             C C +P++GGCR CL+ ++S  LRNAG+NSA+CKSKWRS
Sbjct: 120 TTCGCGKPMVGGCRKCLMAEVSGRLRNAGYNSAICKSKWRS 160


>ref|XP_002330640.1| predicted protein [Populus trichocarpa] gi|222872244|gb|EEF09375.1|
            predicted protein [Populus trichocarpa]
          Length = 296

 Score =  182 bits (462), Expect(2) = 6e-65
 Identities = 97/152 (63%), Positives = 111/152 (73%)
 Frame = +1

Query: 592  IPSGAHTYLDVVHKSSTKQLEVRVVIELNFRAEFEMARASDEYTRLIGRLPEVFVGXXXX 771
            IPSG HT+L+VV K S+K+ EVRVVIELNFRAEFEMA+A+ EY +LI RLPEVFVG    
Sbjct: 154  IPSGEHTFLEVVGKLSSKKGEVRVVIELNFRAEFEMAKANQEYNQLISRLPEVFVGKAER 213

Query: 772  XXXXXXXXXXXXXIKILCSAAKKCMKENKMHIGPWRKHKYMQAKWFGTCERTMSQPHFKQ 951
                         IKILCSAAKKCMKE KMH+GPWRKHKYMQ+KW  TCERT   P    
Sbjct: 214  LTAL---------IKILCSAAKKCMKEKKMHLGPWRKHKYMQSKWIATCERTTPAPLPGG 264

Query: 952  LSDRSMKPKASMLTFDLLDMLPSLQSFTAVKV 1047
             SDR+ KP+ASMLT+DLL+ LP L   TAV+V
Sbjct: 265  FSDRTAKPRASMLTYDLLETLPVLHC-TAVEV 295



 Score = 93.2 bits (230), Expect(2) = 6e-65
 Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 1/159 (0%)
 Frame = +3

Query: 30  FSGEMSVFDDMEFGFFYYSEGSWD-SVSSGTTSNDFEDDEETENSVDXXXXXXXXXXXXX 206
           FS + + F D+ FGF    E S D S +SG   N+ ++DE +  +V+             
Sbjct: 21  FSDDPAYFTDIVFGFLEEQEVSPDGSCASGGEYNEEDEDEISPCNVEENKKFWDE----- 75

Query: 207 XXXXXXXXXXXXXXXXXXXXXXXXXQHQLLETTLSRTSSIESKIRQATKVALRESQLEGV 386
                                    Q+QLL+ TL RTSS+E+KIRQATK  L+E  + G+
Sbjct: 76  -------------------------QNQLLQATLYRTSSLEAKIRQATKDTLKEIDVVGM 110

Query: 387 VCACSRPVIGGCRNCLLQKISDHLRNAGFNSAVCKSKWR 503
            C C + V G CR+CL ++IS  L+N G+N A+CKSKW+
Sbjct: 111 HCLCGKLVAGDCRDCLQREISIRLQNEGYNCAICKSKWK 149


>ref|XP_002305794.1| predicted protein [Populus trichocarpa] gi|222848758|gb|EEE86305.1|
            predicted protein [Populus trichocarpa]
          Length = 306

 Score =  167 bits (422), Expect(2) = 2e-63
 Identities = 91/154 (59%), Positives = 108/154 (70%), Gaps = 2/154 (1%)
 Frame = +1

Query: 592  IPSGAHTYLDVVHKSSTKQLEVRVVIELNFRAEFEMARASDEYTRLIGRLPEVFVGXXXX 771
            IPSG HT++DV+  SS+K+ EVRV+IELNFRAEFEMA+AS+EY +L+ RLPEVFVG    
Sbjct: 162  IPSGEHTFMDVIDNSSSKRGEVRVIIELNFRAEFEMAKASEEYNQLVHRLPEVFVG---- 217

Query: 772  XXXXXXXXXXXXXIKILCSAAKKCMKENKMHIGPWRKHKYMQAKWF-GTCERTMSQPHFK 948
                         +KILC AAKKCMKE KMH+GPWRK +YMQAKW   TCER+ S P F 
Sbjct: 218  -----KVERLNSVVKILCLAAKKCMKEKKMHLGPWRKQRYMQAKWLRTTCERSTSMPPFS 272

Query: 949  Q-LSDRSMKPKASMLTFDLLDMLPSLQSFTAVKV 1047
               S R  +PKASMLT DL +MLP +   TAV V
Sbjct: 273  MGSSGRLPRPKASMLTVDLKEMLPDVHC-TAVAV 305



 Score =  103 bits (256), Expect(2) = 2e-63
 Identities = 44/75 (58%), Positives = 58/75 (77%)
 Frame = +3

Query: 282 QHQLLETTLSRTSSIESKIRQATKVALRESQLEGVVCACSRPVIGGCRNCLLQKISDHLR 461
           QHQLL  TL RTSS+ES+IR  +K AL+E Q+ G +C C RP+   CR+CL+ ++S  LR
Sbjct: 84  QHQLLHATLFRTSSLESRIRSISKEALKEIQMAGTICGCGRPMAASCRSCLMAEVSSRLR 143

Query: 462 NAGFNSAVCKSKWRS 506
           NAG+NSA+CK+KWRS
Sbjct: 144 NAGYNSAICKTKWRS 158


Top