BLASTX nr result

ID: Coptis24_contig00016620 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016620
         (463 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314708.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12
ref|XP_002309989.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12
ref|XP_002324246.1| predicted protein [Populus trichocarpa] gi|2...    75   4e-12
gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]                75   7e-12
gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thali...    75   7e-12

>ref|XP_002314708.1| predicted protein [Populus trichocarpa] gi|222863748|gb|EEF00879.1|
           predicted protein [Populus trichocarpa]
          Length = 245

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 47/127 (37%), Positives = 76/127 (59%)
 Frame = +3

Query: 75  DMVKLNTDGASIGNLGSAGGGCILRDAAGRFIMGASIPIFFATSNESEFVALLYGLQIVL 254
           + +KLN DG S GN G AG G ++RD  G +I G +  I   +S  +E  A+  GLQ+  
Sbjct: 82  ERIKLNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYVGLQLAW 141

Query: 255 EAGYRKLEVETDSQLLYKVLKDEIIDCHWSLARITIQIKLVLCKFQEVHFSWVYREANGA 434
           + G+RK+++E+DS+++  ++  + +    +   I +QIK +L +  EV    VYREAN  
Sbjct: 142 DRGFRKVDLESDSKVVVGLINGDSVRVDRNY-NIIMQIKGMLGRNWEVTTYHVYREANCV 200

Query: 435 ADVLASH 455
           AD LA++
Sbjct: 201 ADWLANY 207


>ref|XP_002309989.1| predicted protein [Populus trichocarpa] gi|222852892|gb|EEE90439.1|
           predicted protein [Populus trichocarpa]
          Length = 245

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 47/127 (37%), Positives = 76/127 (59%)
 Frame = +3

Query: 75  DMVKLNTDGASIGNLGSAGGGCILRDAAGRFIMGASIPIFFATSNESEFVALLYGLQIVL 254
           + +KLN DG S GN G AG G ++RD  G +I G +  I   +S  +E  A+  GLQ+  
Sbjct: 82  ERIKLNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYVGLQLAW 141

Query: 255 EAGYRKLEVETDSQLLYKVLKDEIIDCHWSLARITIQIKLVLCKFQEVHFSWVYREANGA 434
           + G+RK+++E+DS+++  ++  + +    +   I +QIK +L +  EV    VYREAN  
Sbjct: 142 DRGFRKVDLESDSKVVVGLINGDSVRVDRNY-NIIMQIKGMLGRDWEVTTYHVYREANCV 200

Query: 435 ADVLASH 455
           AD LA++
Sbjct: 201 ADWLANY 207


>ref|XP_002324246.1| predicted protein [Populus trichocarpa] gi|222865680|gb|EEF02811.1|
           predicted protein [Populus trichocarpa]
          Length = 245

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 46/127 (36%), Positives = 76/127 (59%)
 Frame = +3

Query: 75  DMVKLNTDGASIGNLGSAGGGCILRDAAGRFIMGASIPIFFATSNESEFVALLYGLQIVL 254
           + +KLN DG S GN G AG G ++R+  G +I G +  I   +S  +E  A+  GLQ+  
Sbjct: 82  ERIKLNVDGCSKGNPGVAGAGGVIREHLGAWIGGFARNIDICSSVNAELWAVYVGLQLAW 141

Query: 255 EAGYRKLEVETDSQLLYKVLKDEIIDCHWSLARITIQIKLVLCKFQEVHFSWVYREANGA 434
           + G+RK+++E+DS+++  ++  + +    +   I +QIK +L +  EV    VYREAN  
Sbjct: 142 DRGFRKVDLESDSKVVVGLINGDSVRVDRNY-NIIMQIKDMLGRDWEVTTYHVYREANCV 200

Query: 435 ADVLASH 455
           AD LA++
Sbjct: 201 ADWLANY 207


>gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]
          Length = 253

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 50/125 (40%), Positives = 68/125 (54%)
 Frame = +3

Query: 84  KLNTDGASIGNLGSAGGGCILRDAAGRFIMGASIPIFFATSNESEFVALLYGLQIVLEAG 263
           KLNTDGAS GN   A  G ++RD  G +  G S+ I   ++  +E     YGL I  E G
Sbjct: 94  KLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERG 153

Query: 264 YRKLEVETDSQLLYKVLKDEIIDCHWSLARITIQIKLVLCKFQEVHFSWVYREANGAADV 443
             +LE+E DS+++   L+  I D H  L+ +      +L K   V  S VYREAN  AD 
Sbjct: 154 VTQLEMEIDSEMVVGFLRTGIDDSH-PLSFLVRLCHGLLSKDWSVRISHVYREANRLADG 212

Query: 444 LASHA 458
           LA++A
Sbjct: 213 LANYA 217


>gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
           gi|55978717|gb|AAV68820.1| hypothetical protein
           AT1G17390 [Arabidopsis thaliana]
          Length = 272

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 50/125 (40%), Positives = 68/125 (54%)
 Frame = +3

Query: 84  KLNTDGASIGNLGSAGGGCILRDAAGRFIMGASIPIFFATSNESEFVALLYGLQIVLEAG 263
           KLNTDGAS GN   A  G ++RD  G +  G S+ I   ++  +E     YGL I  E G
Sbjct: 113 KLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERG 172

Query: 264 YRKLEVETDSQLLYKVLKDEIIDCHWSLARITIQIKLVLCKFQEVHFSWVYREANGAADV 443
             +LE+E DS+++   L+  I D H  L+ +      +L K   V  S VYREAN  AD 
Sbjct: 173 VTQLEMEIDSEMVVGFLRTGIDDSH-PLSFLVRLCHGLLSKDWSVRISHVYREANRLADG 231

Query: 444 LASHA 458
           LA++A
Sbjct: 232 LANYA 236


Top