BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00016177
         (1390 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279440.1| PREDICTED: mutS protein homolog 5-like [Viti...   390   e-153
emb|CBI26657.3| unnamed protein product [Vitis vinifera]              390   e-153
ref|XP_003545125.1| PREDICTED: mutS protein homolog 5-like [Glyc...   382   e-142
ref|XP_004149586.1| PREDICTED: DNA mismatch repair protein MSH5-...   390   e-141
ref|NP_188683.3| DNA mismatch repair protein MSH5 [Arabidopsis t...   384   e-141

>ref|XP_002279440.1| PREDICTED: mutS protein homolog 5-like [Vitis vinifera]
          Length = 807

 Score =  390 bits (1002), Expect(2) = e-153
 Identities = 193/245 (78%), Positives = 213/245 (86%)
 Frame = -1

Query: 1390 EIKKYFYRTPKTRDLDNLLGDIYHKILDMERAIIRDXXXXXXXXXXXXXSAVTFAAELDC 1211
            + KK+FYRT KTR+LDNLLGDIYHKILDMERAI RD              AV+FAAELDC
Sbjct: 451  DTKKFFYRTSKTRELDNLLGDIYHKILDMERAITRDLVSHILLFSMHLLKAVSFAAELDC 510

Query: 1210 FLSLALVARQNNYVRPVLTEETMLDIHNGRHVLQEMTVDTFVPNDTKIISEGRINIITGP 1031
            FLSL+L+A QNNYVRPVL+ +++LDI NGRHVLQEMTVDTF+PNDTKI+ +GRINIITGP
Sbjct: 511  FLSLSLIAHQNNYVRPVLSADSLLDIRNGRHVLQEMTVDTFIPNDTKILDDGRINIITGP 570

Query: 1030 NYSGKSIYIKQVALIVFLSHIGSFVPAESATVGLTDRIFCAMGSKLMTAEQSTFMIDLHQ 851
            NYSGKS+YIKQVALIVFLSHIGSFVPA++ATVGLTDRIFCAMGSK MTAEQSTFMIDLHQ
Sbjct: 571  NYSGKSVYIKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMGSKPMTAEQSTFMIDLHQ 630

Query: 850  VGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTINHFATCGESPKVLLCTHLTEVFSE 671
            VGMMLR A SRSLCLLDEFGKGTLTEDGIGLLGGTINHF    + PKVL+CTHLTE+F+E
Sbjct: 631  VGMMLRHANSRSLCLLDEFGKGTLTEDGIGLLGGTINHFVASDDPPKVLVCTHLTEMFNE 690

Query: 670  GFLVK 656
              L K
Sbjct: 691  SCLPK 695



 Score =  179 bits (455), Expect(2) = e-153
 Identities = 84/113 (74%), Positives = 100/113 (88%)
 Frame = -2

Query: 576  QSENIKFYTMSVLRPEKNCTDLEEIVFLYRLVPGHALLSYGLHCAILAGMPEEVLNRAAF 397
            +SE I+FYTMSVLRP+ NCTD+E+IVFLYRLVPGHALLSYGLHCA+LAG+PE+V+ RAA 
Sbjct: 695  KSEKIRFYTMSVLRPDNNCTDIEDIVFLYRLVPGHALLSYGLHCALLAGVPEDVIKRAAC 754

Query: 396  VLETITSNNQVERVCAERILAKDQQYKEAVDKMLAFDATRGDLNLFFQDIFPS 238
            +L+ I +N  VER+C ERI A+DQ YK+AVDKMLAFD  +GDLNLFFQDIFPS
Sbjct: 755  ILDAIGNNKHVERLCNERISAQDQLYKDAVDKMLAFDILKGDLNLFFQDIFPS 807


>emb|CBI26657.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score =  390 bits (1002), Expect(2) = e-153
 Identities = 193/245 (78%), Positives = 213/245 (86%)
 Frame = -1

Query: 1390 EIKKYFYRTPKTRDLDNLLGDIYHKILDMERAIIRDXXXXXXXXXXXXXSAVTFAAELDC 1211
            + KK+FYRT KTR+LDNLLGDIYHKILDMERAI RD              AV+FAAELDC
Sbjct: 437  DTKKFFYRTSKTRELDNLLGDIYHKILDMERAITRDLVSHILLFSMHLLKAVSFAAELDC 496

Query: 1210 FLSLALVARQNNYVRPVLTEETMLDIHNGRHVLQEMTVDTFVPNDTKIISEGRINIITGP 1031
            FLSL+L+A QNNYVRPVL+ +++LDI NGRHVLQEMTVDTF+PNDTKI+ +GRINIITGP
Sbjct: 497  FLSLSLIAHQNNYVRPVLSADSLLDIRNGRHVLQEMTVDTFIPNDTKILDDGRINIITGP 556

Query: 1030 NYSGKSIYIKQVALIVFLSHIGSFVPAESATVGLTDRIFCAMGSKLMTAEQSTFMIDLHQ 851
            NYSGKS+YIKQVALIVFLSHIGSFVPA++ATVGLTDRIFCAMGSK MTAEQSTFMIDLHQ
Sbjct: 557  NYSGKSVYIKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMGSKPMTAEQSTFMIDLHQ 616

Query: 850  VGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTINHFATCGESPKVLLCTHLTEVFSE 671
            VGMMLR A SRSLCLLDEFGKGTLTEDGIGLLGGTINHF    + PKVL+CTHLTE+F+E
Sbjct: 617  VGMMLRHANSRSLCLLDEFGKGTLTEDGIGLLGGTINHFVASDDPPKVLVCTHLTEMFNE 676

Query: 670  GFLVK 656
              L K
Sbjct: 677  SCLPK 681



 Score =  179 bits (455), Expect(2) = e-153
 Identities = 84/113 (74%), Positives = 100/113 (88%)
 Frame = -2

Query: 576  QSENIKFYTMSVLRPEKNCTDLEEIVFLYRLVPGHALLSYGLHCAILAGMPEEVLNRAAF 397
            +SE I+FYTMSVLRP+ NCTD+E+IVFLYRLVPGHALLSYGLHCA+LAG+PE+V+ RAA 
Sbjct: 681  KSEKIRFYTMSVLRPDNNCTDIEDIVFLYRLVPGHALLSYGLHCALLAGVPEDVIKRAAC 740

Query: 396  VLETITSNNQVERVCAERILAKDQQYKEAVDKMLAFDATRGDLNLFFQDIFPS 238
            +L+ I +N  VER+C ERI A+DQ YK+AVDKMLAFD  +GDLNLFFQDIFPS
Sbjct: 741  ILDAIGNNKHVERLCNERISAQDQLYKDAVDKMLAFDILKGDLNLFFQDIFPS 793


>ref|XP_003545125.1| PREDICTED: mutS protein homolog 5-like [Glycine max]
          Length = 882

 Score =  382 bits (980), Expect(2) = e-142
 Identities = 189/245 (77%), Positives = 208/245 (84%)
 Frame = -1

Query: 1390 EIKKYFYRTPKTRDLDNLLGDIYHKILDMERAIIRDXXXXXXXXXXXXXSAVTFAAELDC 1211
            E KKYFYRTPKTR+LD+LLGDI+HKILDMERAI RD                TFAAELDC
Sbjct: 451  ETKKYFYRTPKTRELDSLLGDIHHKILDMERAITRDLFSRILLFQTHLIKVATFAAELDC 510

Query: 1210 FLSLALVARQNNYVRPVLTEETMLDIHNGRHVLQEMTVDTFVPNDTKIISEGRINIITGP 1031
            FLS+ALVARQNNYVRP LTEE +LDI NGRHVLQEMTVDTF+PNDTKI+ +GRINIITGP
Sbjct: 511  FLSMALVARQNNYVRPSLTEENLLDIKNGRHVLQEMTVDTFIPNDTKILHDGRINIITGP 570

Query: 1030 NYSGKSIYIKQVALIVFLSHIGSFVPAESATVGLTDRIFCAMGSKLMTAEQSTFMIDLHQ 851
            N+SGKSIY+KQVA+IVFLSHIGSFVPA++ATVGLTDRIFCA GS+LMTAEQSTFMIDLHQ
Sbjct: 571  NFSGKSIYLKQVAIIVFLSHIGSFVPADAATVGLTDRIFCATGSRLMTAEQSTFMIDLHQ 630

Query: 850  VGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTINHFATCGESPKVLLCTHLTEVFSE 671
            +GMMLR ATSRSLCL+DEFGKGTLTEDGIGLL GTINHF T  E PKV +CTHL ++   
Sbjct: 631  IGMMLRHATSRSLCLVDEFGKGTLTEDGIGLLAGTINHFVTTDEPPKVFVCTHLMDLLHG 690

Query: 670  GFLVK 656
              L K
Sbjct: 691  HSLTK 695



 Score =  150 bits (380), Expect(2) = e-142
 Identities = 68/111 (61%), Positives = 92/111 (82%)
 Frame = -2

Query: 576  QSENIKFYTMSVLRPEKNCTDLEEIVFLYRLVPGHALLSYGLHCAILAGMPEEVLNRAAF 397
            +SE IKFYTMS+LRP+ N T +E+IVFLYRLVPGHA  SYGLHCA+LAG+PEE++ RA  
Sbjct: 695  KSEQIKFYTMSILRPDGNSTHIEDIVFLYRLVPGHAHHSYGLHCALLAGVPEEIIKRATA 754

Query: 396  VLETITSNNQVERVCAERILAKDQQYKEAVDKMLAFDATRGDLNLFFQDIF 244
            VL+T+++N  VER+  E I A+D+QYK+A++K+L FD  +GDL +FF+D+F
Sbjct: 755  VLDTVSNNKHVERLSNENISAQDRQYKDAMEKLLEFDIDKGDLKIFFEDVF 805


>ref|XP_004149586.1| PREDICTED: DNA mismatch repair protein MSH5-like [Cucumis sativus]
            gi|449519898|ref|XP_004166971.1| PREDICTED: DNA mismatch
            repair protein MSH5-like [Cucumis sativus]
          Length = 807

 Score =  390 bits (1002), Expect(2) = e-141
 Identities = 194/243 (79%), Positives = 213/243 (87%)
 Frame = -1

Query: 1390 EIKKYFYRTPKTRDLDNLLGDIYHKILDMERAIIRDXXXXXXXXXXXXXSAVTFAAELDC 1211
            +IK++FY +PKTR+LDNLLGDIYHKILDMERAIIRD              AV FAAELDC
Sbjct: 451  DIKRFFYHSPKTRELDNLLGDIYHKILDMERAIIRDLVSHILVFSLHLHKAVDFAAELDC 510

Query: 1210 FLSLALVARQNNYVRPVLTEETMLDIHNGRHVLQEMTVDTFVPNDTKIISEGRINIITGP 1031
            FLSLAL+ARQNNYVRP LT ++MLDI NGRHVLQEM VDTF+PNDTKI  +GR+NIITGP
Sbjct: 511  FLSLALIARQNNYVRPDLTADSMLDIKNGRHVLQEMAVDTFIPNDTKIFYDGRVNIITGP 570

Query: 1030 NYSGKSIYIKQVALIVFLSHIGSFVPAESATVGLTDRIFCAMGSKLMTAEQSTFMIDLHQ 851
            NYSGKSIY+KQVALIVFLSHIGSFVPAE+ATVGLTDRIFCAMGSK MTAEQSTFMIDL Q
Sbjct: 571  NYSGKSIYVKQVALIVFLSHIGSFVPAEAATVGLTDRIFCAMGSKHMTAEQSTFMIDLLQ 630

Query: 850  VGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTINHFATCGESPKVLLCTHLTEVFSE 671
            VGMMLRQAT RSLCL+DEFGKGTLTEDGIGLLGGTI HFA+  +SPKVL+CTHLTE+ +E
Sbjct: 631  VGMMLRQATCRSLCLIDEFGKGTLTEDGIGLLGGTITHFASSNDSPKVLVCTHLTELINE 690

Query: 670  GFL 662
             FL
Sbjct: 691  SFL 693



 Score =  140 bits (354), Expect(2) = e-141
 Identities = 66/111 (59%), Positives = 88/111 (79%)
 Frame = -2

Query: 570  ENIKFYTMSVLRPEKNCTDLEEIVFLYRLVPGHALLSYGLHCAILAGMPEEVLNRAAFVL 391
            E IKFY M+V+RP+ +CT+ E+IVFLYRLVPGHAL SYGLHCA+LAG+P+EV+ RAAFVL
Sbjct: 697  ERIKFYNMTVIRPDNDCTENEDIVFLYRLVPGHALPSYGLHCALLAGVPDEVIKRAAFVL 756

Query: 390  ETITSNNQVERVCAERILAKDQQYKEAVDKMLAFDATRGDLNLFFQDIFPS 238
            + + ++  VER+  E + A+D+ Y++AVDK+L  D  + DL  FFQDIF S
Sbjct: 757  DAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLGRFFQDIFLS 807


>ref|NP_188683.3| DNA mismatch repair protein MSH5 [Arabidopsis thaliana]
            gi|395406789|sp|F4JEP5.1|MSH5_ARATH RecName: Full=DNA
            mismatch repair protein MSH5; Short=AtMSH5; AltName:
            Full=MutS protein homolog 5 gi|332642863|gb|AEE76384.1|
            DNA mismatch repair protein MSH5 [Arabidopsis thaliana]
          Length = 807

 Score =  384 bits (987), Expect(2) = e-141
 Identities = 191/243 (78%), Positives = 209/243 (86%)
 Frame = -1

Query: 1390 EIKKYFYRTPKTRDLDNLLGDIYHKILDMERAIIRDXXXXXXXXXXXXXSAVTFAAELDC 1211
            E +++FY T KTR+LDNLLGDIYHKILDMERAIIRD              AV F AELDC
Sbjct: 451  ETQRFFYHTSKTRELDNLLGDIYHKILDMERAIIRDLLSHTLLFSAHLLKAVNFVAELDC 510

Query: 1210 FLSLALVARQNNYVRPVLTEETMLDIHNGRHVLQEMTVDTFVPNDTKIISEGRINIITGP 1031
             LSLA VA QNNYVRPVLT E++LDI NGRHVLQEM VDTF+PNDT+I   GRI+IITGP
Sbjct: 511  ILSLACVAHQNNYVRPVLTVESLLDIRNGRHVLQEMAVDTFIPNDTEINDNGRIHIITGP 570

Query: 1030 NYSGKSIYIKQVALIVFLSHIGSFVPAESATVGLTDRIFCAMGSKLMTAEQSTFMIDLHQ 851
            NYSGKSIY+KQVALIVFLSHIGSFVPA++ATVGLTDRIFCAMGSK MTAEQSTFMIDLHQ
Sbjct: 571  NYSGKSIYVKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMGSKFMTAEQSTFMIDLHQ 630

Query: 850  VGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTINHFATCGESPKVLLCTHLTEVFSE 671
            VGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTI+HFATC E P+V++CTHLTE+ +E
Sbjct: 631  VGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTISHFATCAEPPRVVVCTHLTELLNE 690

Query: 670  GFL 662
              L
Sbjct: 691  SCL 693



 Score =  145 bits (365), Expect(2) = e-141
 Identities = 67/112 (59%), Positives = 88/112 (78%)
 Frame = -2

Query: 573  SENIKFYTMSVLRPEKNCTDLEEIVFLYRLVPGHALLSYGLHCAILAGMPEEVLNRAAFV 394
            SE IKFYTMSVLRP+    ++EEIVFLYRL+PG  LLSYGLHCA+LAG+PEEV+ RAA V
Sbjct: 696  SEKIKFYTMSVLRPDTESANMEEIVFLYRLIPGQTLLSYGLHCALLAGVPEEVVKRAAIV 755

Query: 393  LETITSNNQVERVCAERILAKDQQYKEAVDKMLAFDATRGDLNLFFQDIFPS 238
            L+   SNN V+++  ++I ++DQ +K+AVDK    D ++GD++ FFQDIF S
Sbjct: 756  LDAFESNNNVDKLSLDKISSQDQAFKDAVDKFAELDISKGDIHAFFQDIFTS 807