BLASTX nr result
ID: Coptis24_contig00015663
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00015663
(662 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi... 45 8e-10
ref|XP_002329076.1| predicted protein [Populus trichocarpa] gi|2... 42 2e-08
ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|2... 49 2e-08
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ... 42 3e-08
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g... 43 5e-08
>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
gi|147785390|emb|CAN68678.1| hypothetical protein
VITISV_041941 [Vitis vinifera]
Length = 409
Score = 45.4 bits (106), Expect(2) = 8e-10
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Frame = -1
Query: 335 CNRPYSFGVFEGNLSATECTSECDVHIWVMKKYNVKESWVKQFSI-AH------------ 195
CN Y V G LSA S + +WVMK+Y+VKESW+K+F+I AH
Sbjct: 279 CN--YHLLVLGGCLSAAVHRSNGKLEVWVMKEYDVKESWIKEFNIGAHLPKGLKQDVNRP 336
Query: 194 DSLCRQGFNCEIVEIVKACESGSLLLLCDALHLVSYN 84
+ R V ++ ++G +LL LVSYN
Sbjct: 337 HRIWRNAPKGRGVRLLCLLKNGEILLEYKGRVLVSYN 373
Score = 43.5 bits (101), Expect(2) = 8e-10
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Frame = -2
Query: 655 GFGIADSSMVFKRV-LVMFSDCEDNFGKF------ENRVQVHTLGSTIWRKKNGVVPDVL 497
GFG + V+K V +V + + F +F ++ VQV TLGS WR G V L
Sbjct: 170 GFGYHPMTEVYKVVKVVYYRNGYGGFSRFRRITCSQSEVQVLTLGSPTWRSL-GKVSYQL 228
Query: 496 RQVPEKVSVFAHGCLHWMTVDRSLPNGEPIIVSFNLGVEEFGFVPTP 356
+ P + V +G LHW+T R IVSF+L E+F +P P
Sbjct: 229 DRWPSEALV--NGRLHWVTRPRRYVT--RFIVSFDLADEQFREIPKP 271
>ref|XP_002329076.1| predicted protein [Populus trichocarpa] gi|222869745|gb|EEF06876.1|
predicted protein [Populus trichocarpa]
Length = 419
Score = 42.4 bits (98), Expect(2) = 2e-08
Identities = 36/118 (30%), Positives = 56/118 (47%)
Frame = -2
Query: 655 GFGIADSSMVFKRVLVMFSDCEDNFGKFENRVQVHTLGSTIWRKKNGVVPDVLRQVPEKV 476
G GI + FK VL F + R +++T+G+ WR+ + + ++
Sbjct: 162 GLGITNGKFEFK-VLRTFCLKTNRRAPGYPRAEIYTIGTKKWRRIGNPL-SCIEKLDFDT 219
Query: 475 SVFAHGCLHWMTVDRSLPNGEPIIVSFNLGVEEFGFVPTPGSHLF*PAIDRIALGCLK 302
SV HG +HW+ + L I SFN G E+FG +P P ++ A R+ LG LK
Sbjct: 220 SV--HGYIHWIPDQKILQ----FICSFNFGKEQFGQLPLPPTYDGNDA--RVKLGVLK 269
Score = 42.0 bits (97), Expect(2) = 2e-08
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = -1
Query: 257 IWVMKKYNVKESWVKQFSIAHDSLCRQGFNCEIVEIVKACESGSLLLLCDALHLVSYNIT 78
IWVMKKY +K+SW++Q+ I ++L + E + +G +L+ + LV YN T
Sbjct: 288 IWVMKKYGIKQSWIQQYVI--ENLYPDVGRLKFYEPLIFLSTGEILISFNGEFLVCYNTT 345
Query: 77 SRK 69
+K
Sbjct: 346 LKK 348
>ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1|
predicted protein [Populus trichocarpa]
Length = 408
Score = 48.9 bits (115), Expect(2) = 2e-08
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Frame = -2
Query: 655 GFGIADSSMVFK--RVLVMFSDCEDNFGKFENRVQVHTLGSTIWRKKNG--------VVP 506
GFG + +K R + + D D F F V+V++L S W++ + + P
Sbjct: 147 GFGHDPINEDYKVVRFIHFYGDSPDGF--FHCEVKVYSLKSNSWKRIDDYPYDLRFILPP 204
Query: 505 DVLRQVPEKVSVFAHGCLHWMT--VDRSLPNGEPIIVSFNLGVEEFGFVPTP 356
D + VFA+ +HW V + NG +IV+F+LG EEF +P P
Sbjct: 205 DYHPRCRRGYGVFANSAVHWKATVVGKGKENGSDLIVAFDLGAEEFKIIPQP 256
Score = 35.0 bits (79), Expect(2) = 2e-08
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -1
Query: 281 CTSEC-DVHIWVMKKYNVKESWVKQFSIAHDSLCRQGFNCEIVEIVKACESGSLLLLCDA 105
C C V IWVMK+Y VKESW ++ L + F + + +LL D
Sbjct: 278 CNKNCKQVEIWVMKEYGVKESWTHLCTVI-AQLQVKAFWLHARPLAYSKGGDKILLELDN 336
Query: 104 LHLVSYNITSRKCRFL 57
V Y++ RK + +
Sbjct: 337 RFFVWYDLRRRKSKII 352
>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 389
Score = 42.4 bits (98), Expect(2) = 3e-08
Identities = 31/100 (31%), Positives = 48/100 (48%)
Frame = -2
Query: 655 GFGIADSSMVFKRVLVMFSDCEDNFGKFENRVQVHTLGSTIWRKKNGVVPDVLRQVPEKV 476
GFG S+ +K V + D FE+ V+V +L WR+ + VL P +
Sbjct: 143 GFGYDLSNDDYKLVRIAQFGGVDR-KSFESEVKVFSLRKNSWRRIADMPYCVL--YPGEN 199
Query: 475 SVFAHGCLHWMTVDRSLPNGEPIIVSFNLGVEEFGFVPTP 356
++A+G LHW+ IV+ +LGVE++ VP P
Sbjct: 200 GIYANGALHWLVSQDPDSTVADTIVALDLGVEDYHVVPKP 239
Score = 41.2 bits (95), Expect(2) = 3e-08
Identities = 21/51 (41%), Positives = 27/51 (52%)
Frame = -1
Query: 350 PSVLTCNRPYSFGVFEGNLSATECTSECDVHIWVMKKYNVKESWVKQFSIA 198
P + N GV +G LS V +WVM++Y VKESW K FS+A
Sbjct: 239 PEFVDMNCNMGVGVLQGCLSLLAYARSERVDVWVMEEYMVKESWSKLFSVA 289
>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
gi|222854763|gb|EEE92310.1| f-box family protein
[Populus trichocarpa]
Length = 396
Score = 43.1 bits (100), Expect(2) = 5e-08
Identities = 26/73 (35%), Positives = 41/73 (56%)
Frame = -2
Query: 574 FENRVQVHTLGSTIWRKKNGVVPDVLRQVPEKVSVFAHGCLHWMTVDRSLPNGEPIIVSF 395
FE+ V+V++L WR+ G +P + P VFA+G LHW+ + N I+V+
Sbjct: 176 FESEVKVYSLRKQSWRRI-GDMPYCVHY-PGANGVFANGALHWVVGENPESNVANIVVAL 233
Query: 394 NLGVEEFGFVPTP 356
+LGVE++ V P
Sbjct: 234 DLGVEDYREVLQP 246
Score = 39.7 bits (91), Expect(2) = 5e-08
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = -1
Query: 263 VHIWVMKKYNVKESWVKQFSIAHDSLCRQGFNCEIVEIVKACESGSLLLLCDALHLVSYN 84
V +W+MK+Y VKESW K FS+A + GF + + + +L+ D L L Y+
Sbjct: 275 VDVWMMKEYGVKESWTKLFSVAQYEVI--GFLRSLKPLAYSKSGDEVLIEHDNLDLCWYD 332
Query: 83 ITSRKCR 63
+ ++ +
Sbjct: 333 LKRKQVK 339