BLASTX nr result
ID: Coptis24_contig00015496
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00015496 (778 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI26179.3| unnamed protein product [Vitis vinifera] 88 2e-15 ref|XP_003550050.1| PREDICTED: multiple RNA-binding domain-conta... 85 2e-14 ref|XP_002280240.1| PREDICTED: 40S ribosomal protein S19, mitoch... 81 2e-13 ref|NP_197404.2| RNA recognition motif-containing protein [Arabi... 74 4e-11 ref|NP_974808.1| RNA recognition motif-containing protein [Arabi... 74 4e-11 >emb|CBI26179.3| unnamed protein product [Vitis vinifera] Length = 156 Score = 88.2 bits (217), Expect = 2e-15 Identities = 54/137 (39%), Positives = 73/137 (53%) Frame = +3 Query: 111 LNISLEQHSAPIPILYCFTPIEEEKSHSTRIFIKGLSKSVPEGFLAKTFARFGQVNRVKI 290 ++IS P L C +++S STRIFIKGL +S EG L K F++FG+V++V+I Sbjct: 38 VSISSASPGLRYPCLRCCAT--DDESSSTRIFIKGLPQSTCEGSLKKAFSQFGEVSKVRI 95 Query: 291 IMDKKSIESLGFAYVWFTNEDAAQSAVKEMDAKXXXXXXXXXXXXXXXXXXXXRFIAVTI 470 +K S + LGFA+ WFT E++AQ AVK MD K RF+ V I Sbjct: 96 KRNKISSQPLGFAFAWFTTEESAQLAVKMMDGK----------------FFHGRFVFVKI 139 Query: 471 AKPESPTSHTRTPQYTF 521 AKP H + Y F Sbjct: 140 AKPGPSKRHVKAAPYKF 156 >ref|XP_003550050.1| PREDICTED: multiple RNA-binding domain-containing protein 1-like [Glycine max] Length = 160 Score = 85.1 bits (209), Expect = 2e-14 Identities = 49/121 (40%), Positives = 65/121 (53%) Frame = +3 Query: 159 CFTPIEEEKSHSTRIFIKGLSKSVPEGFLAKTFARFGQVNRVKIIMDKKSIESLGFAYVW 338 C + + S +IF+KGL S EG L K F+ FG+V +++ +DK+S +SLGFAY+W Sbjct: 56 CTSSVPCNLPSSPKIFVKGLPLSTSEGHLMKVFSEFGEVTLIQLPIDKESGQSLGFAYIW 115 Query: 339 FTNEDAAQSAVKEMDAKXXXXXXXXXXXXXXXXXXXXRFIAVTIAKPESPTSHTRTPQYT 518 F E++AQ AV EM+ K RFI VTIAKP S S R Y Sbjct: 116 FVKEESAQLAVLEMNGK----------------FFYGRFIYVTIAKPGSSKSSKRATAYK 159 Query: 519 F 521 F Sbjct: 160 F 160 >ref|XP_002280240.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like [Vitis vinifera] Length = 145 Score = 81.3 bits (199), Expect = 2e-13 Identities = 44/93 (47%), Positives = 61/93 (65%) Frame = +3 Query: 111 LNISLEQHSAPIPILYCFTPIEEEKSHSTRIFIKGLSKSVPEGFLAKTFARFGQVNRVKI 290 ++IS P L C +++S STRIFIKGL +S EG L K F++FG+V++V+I Sbjct: 38 VSISSASPGLRYPCLRCCAT--DDESSSTRIFIKGLPQSTCEGSLKKAFSQFGEVSKVRI 95 Query: 291 IMDKKSIESLGFAYVWFTNEDAAQSAVKEMDAK 389 +K S + LGFA+ WFT E++AQ AVK MD K Sbjct: 96 KRNKISSQPLGFAFAWFTTEESAQLAVKMMDGK 128 >ref|NP_197404.2| RNA recognition motif-containing protein [Arabidopsis thaliana] gi|332005259|gb|AED92642.1| RNA recognition motif-containing protein [Arabidopsis thaliana] Length = 172 Score = 73.9 bits (180), Expect = 4e-11 Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 6/113 (5%) Frame = +3 Query: 69 LTRPLICKKNYQISLNISLEQHSAPIPILYCFTPIEEEKSHST------RIFIKGLSKSV 230 LT I + S + + + +P+ + C +E + S+ +F+KG S SV Sbjct: 29 LTMSTIPRDRLISSFHTARSKLCSPLRTISCVAGDDETREASSLPSSISSLFVKGFSDSV 88 Query: 231 PEGFLAKTFARFGQVNRVKIIMDKKSIESLGFAYVWFTNEDAAQSAVKEMDAK 389 EG L K F+ FGQV VKII ++++ +SLG+ YVWF +++ AQSAV+ M+ K Sbjct: 89 SEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGK 141 >ref|NP_974808.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gi|117168081|gb|ABK32123.1| At5g19030 [Arabidopsis thaliana] gi|332005260|gb|AED92643.1| RNA recognition motif-containing protein [Arabidopsis thaliana] Length = 126 Score = 73.9 bits (180), Expect = 4e-11 Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 6/113 (5%) Frame = +3 Query: 69 LTRPLICKKNYQISLNISLEQHSAPIPILYCFTPIEEEKSHST------RIFIKGLSKSV 230 LT I + S + + + +P+ + C +E + S+ +F+KG S SV Sbjct: 10 LTMSTIPRDRLISSFHTARSKLCSPLRTISCVAGDDETREASSLPSSISSLFVKGFSDSV 69 Query: 231 PEGFLAKTFARFGQVNRVKIIMDKKSIESLGFAYVWFTNEDAAQSAVKEMDAK 389 EG L K F+ FGQV VKII ++++ +SLG+ YVWF +++ AQSAV+ M+ K Sbjct: 70 SEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGK 122