BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015496
         (778 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26179.3| unnamed protein product [Vitis vinifera]               88   2e-15
ref|XP_003550050.1| PREDICTED: multiple RNA-binding domain-conta...    85   2e-14
ref|XP_002280240.1| PREDICTED: 40S ribosomal protein S19, mitoch...    81   2e-13
ref|NP_197404.2| RNA recognition motif-containing protein [Arabi...    74   4e-11
ref|NP_974808.1| RNA recognition motif-containing protein [Arabi...    74   4e-11

>emb|CBI26179.3| unnamed protein product [Vitis vinifera]
          Length = 156

 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 54/137 (39%), Positives = 73/137 (53%)
 Frame = +3

Query: 111 LNISLEQHSAPIPILYCFTPIEEEKSHSTRIFIKGLSKSVPEGFLAKTFARFGQVNRVKI 290
           ++IS        P L C     +++S STRIFIKGL +S  EG L K F++FG+V++V+I
Sbjct: 38  VSISSASPGLRYPCLRCCAT--DDESSSTRIFIKGLPQSTCEGSLKKAFSQFGEVSKVRI 95

Query: 291 IMDKKSIESLGFAYVWFTNEDAAQSAVKEMDAKXXXXXXXXXXXXXXXXXXXXRFIAVTI 470
             +K S + LGFA+ WFT E++AQ AVK MD K                    RF+ V I
Sbjct: 96  KRNKISSQPLGFAFAWFTTEESAQLAVKMMDGK----------------FFHGRFVFVKI 139

Query: 471 AKPESPTSHTRTPQYTF 521
           AKP     H +   Y F
Sbjct: 140 AKPGPSKRHVKAAPYKF 156


>ref|XP_003550050.1| PREDICTED: multiple RNA-binding domain-containing protein 1-like
           [Glycine max]
          Length = 160

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 49/121 (40%), Positives = 65/121 (53%)
 Frame = +3

Query: 159 CFTPIEEEKSHSTRIFIKGLSKSVPEGFLAKTFARFGQVNRVKIIMDKKSIESLGFAYVW 338
           C + +      S +IF+KGL  S  EG L K F+ FG+V  +++ +DK+S +SLGFAY+W
Sbjct: 56  CTSSVPCNLPSSPKIFVKGLPLSTSEGHLMKVFSEFGEVTLIQLPIDKESGQSLGFAYIW 115

Query: 339 FTNEDAAQSAVKEMDAKXXXXXXXXXXXXXXXXXXXXRFIAVTIAKPESPTSHTRTPQYT 518
           F  E++AQ AV EM+ K                    RFI VTIAKP S  S  R   Y 
Sbjct: 116 FVKEESAQLAVLEMNGK----------------FFYGRFIYVTIAKPGSSKSSKRATAYK 159

Query: 519 F 521
           F
Sbjct: 160 F 160


>ref|XP_002280240.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like [Vitis
           vinifera]
          Length = 145

 Score = 81.3 bits (199), Expect = 2e-13
 Identities = 44/93 (47%), Positives = 61/93 (65%)
 Frame = +3

Query: 111 LNISLEQHSAPIPILYCFTPIEEEKSHSTRIFIKGLSKSVPEGFLAKTFARFGQVNRVKI 290
           ++IS        P L C     +++S STRIFIKGL +S  EG L K F++FG+V++V+I
Sbjct: 38  VSISSASPGLRYPCLRCCAT--DDESSSTRIFIKGLPQSTCEGSLKKAFSQFGEVSKVRI 95

Query: 291 IMDKKSIESLGFAYVWFTNEDAAQSAVKEMDAK 389
             +K S + LGFA+ WFT E++AQ AVK MD K
Sbjct: 96  KRNKISSQPLGFAFAWFTTEESAQLAVKMMDGK 128


>ref|NP_197404.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|332005259|gb|AED92642.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 172

 Score = 73.9 bits (180), Expect = 4e-11
 Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
 Frame = +3

Query: 69  LTRPLICKKNYQISLNISLEQHSAPIPILYCFTPIEEEKSHST------RIFIKGLSKSV 230
           LT   I +     S + +  +  +P+  + C    +E +  S+       +F+KG S SV
Sbjct: 29  LTMSTIPRDRLISSFHTARSKLCSPLRTISCVAGDDETREASSLPSSISSLFVKGFSDSV 88

Query: 231 PEGFLAKTFARFGQVNRVKIIMDKKSIESLGFAYVWFTNEDAAQSAVKEMDAK 389
            EG L K F+ FGQV  VKII ++++ +SLG+ YVWF +++ AQSAV+ M+ K
Sbjct: 89  SEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGK 141


>ref|NP_974808.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|117168081|gb|ABK32123.1| At5g19030 [Arabidopsis
           thaliana] gi|332005260|gb|AED92643.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 126

 Score = 73.9 bits (180), Expect = 4e-11
 Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
 Frame = +3

Query: 69  LTRPLICKKNYQISLNISLEQHSAPIPILYCFTPIEEEKSHST------RIFIKGLSKSV 230
           LT   I +     S + +  +  +P+  + C    +E +  S+       +F+KG S SV
Sbjct: 10  LTMSTIPRDRLISSFHTARSKLCSPLRTISCVAGDDETREASSLPSSISSLFVKGFSDSV 69

Query: 231 PEGFLAKTFARFGQVNRVKIIMDKKSIESLGFAYVWFTNEDAAQSAVKEMDAK 389
            EG L K F+ FGQV  VKII ++++ +SLG+ YVWF +++ AQSAV+ M+ K
Sbjct: 70  SEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGK 122