BLASTX nr result
ID: Coptis24_contig00015376
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00015376
(813 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI37965.3| unnamed protein product [Vitis vinifera] 78 4e-13
ref|XP_002275925.1| PREDICTED: putative pentatricopeptide repeat... 78 4e-13
ref|XP_002513017.1| pentatricopeptide repeat-containing protein,... 77 1e-12
ref|XP_003523507.1| PREDICTED: pentatricopeptide repeat-containi... 69 6e-10
ref|XP_004158417.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 69 1e-09
>emb|CBI37965.3| unnamed protein product [Vitis vinifera]
Length = 371
Score = 77.8 bits (190), Expect(2) = 4e-13
Identities = 38/69 (55%), Positives = 48/69 (69%)
Frame = +1
Query: 142 SALVGIFGKLLVLSDASKMFDEIPLKNTVCVNALLSGFEEGQLWDESLSFVSLMRRLGLE 321
SALV ++ KL +++DA+ +FDEIP+KNTVC NALLSG+ E +LW E L FV MR L L
Sbjct: 49 SALVDMYAKLSLINDAAMVFDEIPVKNTVCANALLSGYGEAKLWVEGLDFVRKMRSLNLN 108
Query: 322 YHQFTWKGM 348
FT M
Sbjct: 109 CDHFTLSAM 117
Score = 23.1 bits (48), Expect(2) = 4e-13
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3
Query: 336 VEGDGFLQSSLIE 374
VE D FLQSSLIE
Sbjct: 144 VEADVFLQSSLIE 156
Score = 65.9 bits (159), Expect = 1e-08
Identities = 47/121 (38%), Positives = 55/121 (45%), Gaps = 43/121 (35%)
Frame = +2
Query: 506 FGIKPEDEHYSRVLDMHFEADEL*KAYKLVK----------------------------- 598
FG++P EHYS V+D+ A EL KA+K+V
Sbjct: 251 FGLEPGPEHYSCVVDLLCRAGELEKAWKMVNEMTLKENGSYSISMWGALLNACNEFGNVE 310
Query: 599 ------------DSENVG--GSLSNFYARVSMWDEIQNLRELMEEWGLTKGVGCSWIGIA 736
D NVG LSN YA+ SMWDEI LRELM+E GL K VG SWI I
Sbjct: 311 LGKLAAHKALEMDPHNVGIYVLLSNMYAKFSMWDEIGQLRELMKESGLKKDVGRSWIEIT 370
Query: 737 S 739
S
Sbjct: 371 S 371
>ref|XP_002275925.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Vitis vinifera]
Length = 349
Score = 77.8 bits (190), Expect(2) = 4e-13
Identities = 38/69 (55%), Positives = 48/69 (69%)
Frame = +1
Query: 142 SALVGIFGKLLVLSDASKMFDEIPLKNTVCVNALLSGFEEGQLWDESLSFVSLMRRLGLE 321
SALV ++ KL +++DA+ +FDEIP+KNTVC NALLSG+ E +LW E L FV MR L L
Sbjct: 27 SALVDMYAKLSLINDAAMVFDEIPVKNTVCANALLSGYGEAKLWVEGLDFVRKMRSLNLN 86
Query: 322 YHQFTWKGM 348
FT M
Sbjct: 87 CDHFTLSAM 95
Score = 23.1 bits (48), Expect(2) = 4e-13
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3
Query: 336 VEGDGFLQSSLIE 374
VE D FLQSSLIE
Sbjct: 122 VEADVFLQSSLIE 134
Score = 65.9 bits (159), Expect = 1e-08
Identities = 47/121 (38%), Positives = 55/121 (45%), Gaps = 43/121 (35%)
Frame = +2
Query: 506 FGIKPEDEHYSRVLDMHFEADEL*KAYKLVK----------------------------- 598
FG++P EHYS V+D+ A EL KA+K+V
Sbjct: 229 FGLEPGPEHYSCVVDLLCRAGELEKAWKMVNEMTLKENGSYSISMWGALLNACNEFGNVE 288
Query: 599 ------------DSENVG--GSLSNFYARVSMWDEIQNLRELMEEWGLTKGVGCSWIGIA 736
D NVG LSN YA+ SMWDEI LRELM+E GL K VG SWI I
Sbjct: 289 LGKLAAHKALEMDPHNVGIYVLLSNMYAKFSMWDEIGQLRELMKESGLKKDVGRSWIEIT 348
Query: 737 S 739
S
Sbjct: 349 S 349
>ref|XP_002513017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548028|gb|EEF49520.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 349
Score = 76.6 bits (187), Expect(2) = 1e-12
Identities = 41/95 (43%), Positives = 56/95 (58%)
Frame = +1
Query: 64 LEFYHQPHKHVLKLGFFV*CLCR*WRSALVGIFGKLLVLSDASKMFDEIPLKNTVCVNAL 243
+ F Q H HV+K G+ SAL+ ++ KL SDA+ +FDEIP+KNTVC NAL
Sbjct: 4 VNFGEQIHAHVIKSGWLSSVFVG---SALIDLYSKLSFPSDAATVFDEIPVKNTVCANAL 60
Query: 244 LSGFEEGQLWDESLSFVSLMRRLGLEYHQFTWKGM 348
LSG+ E +LW + + + M L L+Y FT M
Sbjct: 61 LSGYIEAKLWYQGVELIKEMPFLSLDYDNFTLSAM 95
Score = 22.3 bits (46), Expect(2) = 1e-12
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 336 VEGDGFLQSSLIE 374
VE D F+QSSLIE
Sbjct: 122 VENDVFMQSSLIE 134
Score = 67.0 bits (162), Expect = 5e-09
Identities = 44/123 (35%), Positives = 56/123 (45%), Gaps = 43/123 (34%)
Frame = +2
Query: 500 RHFGIKPEDEHYSRVLDMHFEADEL*KAYKLVKDS------------------------- 604
R F + P EHYS V+D+ A EL +A+KLV +
Sbjct: 227 RDFNLTPSPEHYSCVVDLFCRAGELDRAWKLVNEMLTKGHEIHSISMWGAVLSACEEHGN 286
Query: 605 ----------------ENVG--GSLSNFYARVSMWDEIQNLRELMEEWGLTKGVGCSWIG 730
+NVG LSN YAR MWDEI +LR++M++ GL K VGCSWI
Sbjct: 287 IEFGKLAAREALKLEPQNVGIYVMLSNLYARFGMWDEIDHLRKIMKDRGLKKDVGCSWIE 346
Query: 731 IAS 739
I S
Sbjct: 347 ITS 349
>ref|XP_003523507.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 472
Score = 68.9 bits (167), Expect(2) = 6e-10
Identities = 42/90 (46%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Frame = +1
Query: 79 QPHKHVLKLGF----FV*CLCR*WRSALVGIFGKLLVLSDASKMFDEIPLKNTVCVNALL 246
Q H HV K G+ FV SAL+ + KL + DA+ MFDEIP KNTVC NALL
Sbjct: 129 QIHAHVAKSGWSSSVFV-------GSALIDFYSKLSNVKDAAHMFDEIPEKNTVCANALL 181
Query: 247 SGFEEGQLWDESLSFVSLMRRLGLEYHQFT 336
SG+ E LW + L V M L L++ FT
Sbjct: 182 SGYAEAGLWVQELQLVRKMPVLKLKHDHFT 211
Score = 21.2 bits (43), Expect(2) = 6e-10
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 336 VEGDGFLQSSLIE 374
+E D FLQS+L+E
Sbjct: 242 IESDVFLQSALVE 254
>ref|XP_004158417.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g18750, chloroplastic-like [Cucumis sativus]
Length = 497
Score = 68.9 bits (167), Expect = 1e-09
Identities = 31/65 (47%), Positives = 47/65 (72%)
Frame = +1
Query: 142 SALVGIFGKLLVLSDASKMFDEIPLKNTVCVNALLSGFEEGQLWDESLSFVSLMRRLGLE 321
SA+V ++ K ++ DA ++FDE+P+KNTVC NALL+G+ E ++W E L + M+ L L+
Sbjct: 178 SAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQGLDLK 237
Query: 322 YHQFT 336
Y QFT
Sbjct: 238 YDQFT 242