BLASTX nr result
ID: Coptis24_contig00015346
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00015346
(341 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002515435.1| protein with unknown function [Ricinus commu... 76 2e-12
ref|XP_003603301.1| Transcription initiation factor TFIID subuni... 75 7e-12
ref|XP_002309672.1| predicted protein [Populus trichocarpa] gi|2... 73 2e-11
ref|XP_004145505.1| PREDICTED: transcription initiation factor T... 72 5e-11
ref|XP_002285276.2| PREDICTED: transcription initiation factor T... 72 5e-11
>ref|XP_002515435.1| protein with unknown function [Ricinus communis]
gi|223545379|gb|EEF46884.1| protein with unknown
function [Ricinus communis]
Length = 670
Score = 76.3 bits (186), Expect = 2e-12
Identities = 53/135 (39%), Positives = 70/135 (51%), Gaps = 27/135 (20%)
Frame = +2
Query: 2 PTEV*HLLLEDLRNCVQLGT----TISLFLLIS*HNGLNCSSIS*DGSLVTGGFSDSSLK 169
PTEV +LEDLRN VQL + ++S + I+ HNGLNCSSIS DGSLV GGFSDSSLK
Sbjct: 315 PTEVEQSILEDLRNRVQLSSAALPSVSFYTFINTHNGLNCSSISHDGSLVAGGFSDSSLK 374
Query: 170 -----RFGTSSNKATCVG--------NFINLGTWQRLDKCVRWHANCNYIAT-------- 286
+ G + + G +F+ +R + H+ Y AT
Sbjct: 375 VWDMAKLGQQGSNSVLQGANDTAASEHFLGANGAKRSYTLFQGHSGPVYSATFSPLGDFI 434
Query: 287 --GSSDKTVRLWDVQ 325
S+D T+RLW +
Sbjct: 435 LSSSADTTIRLWSTK 449
Score = 72.0 bits (175), Expect = 5e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 248 CVRWHANCNYIATGSSDKTVRLWDVQSGECV 340
CV+WHANCNYIATGSSDKTVRLWDVQSGECV
Sbjct: 508 CVQWHANCNYIATGSSDKTVRLWDVQSGECV 538
>ref|XP_003603301.1| Transcription initiation factor TFIID subunit [Medicago truncatula]
gi|355492349|gb|AES73552.1| Transcription initiation
factor TFIID subunit [Medicago truncatula]
Length = 715
Score = 74.7 bits (182), Expect = 7e-12
Identities = 53/135 (39%), Positives = 71/135 (52%), Gaps = 27/135 (20%)
Frame = +2
Query: 2 PTEV*HLLLEDLRNCVQLGT----TISLFLLIS*HNGLNCSSIS*DGSLVTGGFSDSSLK 169
PTEV H +LEDLRN VQL + ++S + I+ HNGL+CSSIS DGSLV GGFSDSSLK
Sbjct: 332 PTEVEHSILEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLVAGGFSDSSLK 391
Query: 170 -----RFGTSSNKATCVGNFINLGTWQRLDK--------CVRWHAN-------C---NYI 280
+ G + + G Q L K + H+ C ++I
Sbjct: 392 VWDMAKLGQQPSSSLSQGENDTSQNEQMLGKSGGKRQYTLFQGHSGPVYAASFCPVGDFI 451
Query: 281 ATGSSDKTVRLWDVQ 325
+ S+D T+RLW +
Sbjct: 452 LSSSADSTIRLWSTK 466
Score = 72.0 bits (175), Expect = 5e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 248 CVRWHANCNYIATGSSDKTVRLWDVQSGECV 340
CV+WHANCNYIATGSSDKTVRLWDVQSGECV
Sbjct: 554 CVQWHANCNYIATGSSDKTVRLWDVQSGECV 584
>ref|XP_002309672.1| predicted protein [Populus trichocarpa] gi|222855648|gb|EEE93195.1|
predicted protein [Populus trichocarpa]
Length = 675
Score = 73.2 bits (178), Expect = 2e-11
Identities = 53/135 (39%), Positives = 70/135 (51%), Gaps = 27/135 (20%)
Frame = +2
Query: 2 PTEV*HLLLEDLRNCVQLGTT----ISLFLLIS*HNGLNCSSIS*DGSLVTGGFSDSSLK 169
P EV +LEDLRN VQL +T +S + I+ HNGLNCSSIS DGSLV GGFSDSSLK
Sbjct: 320 PAEVEQSILEDLRNRVQLSSTTLPSVSFYTFINTHNGLNCSSISHDGSLVAGGFSDSSLK 379
Query: 170 ---------RFGTS----SNKATCVGNFINLGTWQRLDKCVRWHAN----------CNYI 280
+ G S N A + + + +R + H+ ++I
Sbjct: 380 VWDMAKLGQQAGNSILQGENDAAPSEHVLGPNSGKRSYTLFQGHSGPVHSATFSPLGDFI 439
Query: 281 ATGSSDKTVRLWDVQ 325
+ S+D TVRLW +
Sbjct: 440 LSSSADTTVRLWSTE 454
Score = 72.0 bits (175), Expect = 5e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 248 CVRWHANCNYIATGSSDKTVRLWDVQSGECV 340
CV+WHANCNYIATGSSDKTVRLWDVQSGECV
Sbjct: 513 CVQWHANCNYIATGSSDKTVRLWDVQSGECV 543
>ref|XP_004145505.1| PREDICTED: transcription initiation factor TFIID subunit 5-like
[Cucumis sativus] gi|449485181|ref|XP_004157092.1|
PREDICTED: transcription initiation factor TFIID subunit
5-like [Cucumis sativus]
Length = 674
Score = 72.0 bits (175), Expect = 5e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 248 CVRWHANCNYIATGSSDKTVRLWDVQSGECV 340
CV+WHANCNYIATGSSDKTVRLWDVQSGECV
Sbjct: 509 CVQWHANCNYIATGSSDKTVRLWDVQSGECV 539
Score = 67.8 bits (164), Expect(2) = 3e-10
Identities = 37/59 (62%), Positives = 44/59 (74%), Gaps = 4/59 (6%)
Frame = +2
Query: 5 TEV*HLLLEDLRNCVQLGT----TISLFLLIS*HNGLNCSSIS*DGSLVTGGFSDSSLK 169
TEV +LEDLRN VQL + ++S + I+ HNGLNCSSIS DG+LV GGFSDSSLK
Sbjct: 317 TEVEESILEDLRNRVQLSSVALPSVSFYTFINTHNGLNCSSISYDGALVAGGFSDSSLK 375
Score = 21.6 bits (44), Expect(2) = 3e-10
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1
Query: 223 WDMAKIGQ 246
WDMAK+GQ
Sbjct: 377 WDMAKLGQ 384
>ref|XP_002285276.2| PREDICTED: transcription initiation factor TFIID subunit 5-like
isoform 1 [Vitis vinifera]
Length = 667
Score = 72.0 bits (175), Expect = 5e-11
Identities = 56/135 (41%), Positives = 70/135 (51%), Gaps = 27/135 (20%)
Frame = +2
Query: 2 PTEV*HLLLEDLRNCVQLGT----TISLFLLIS*HNGLNCSSIS*DGSLVTGGFSDSSLK 169
PTEV +LEDLRN VQL + ++S + I+ HN LNCSSIS DGSLV GGFSDSSLK
Sbjct: 314 PTEVEQSILEDLRNRVQLSSMALPSVSFYTFINTHNSLNCSSISHDGSLVAGGFSDSSLK 373
Query: 170 RFGTS---SNKATCVGNFIN--------LGT--WQRLDKCVRWHANCNYIAT-------- 286
+ S AT + N LGT +R + H+ Y AT
Sbjct: 374 VWDMSKLGQQAATSIMQGDNDLAPTEQILGTSGGKRSYTLFQGHSGPVYSATFSPLGDFI 433
Query: 287 --GSSDKTVRLWDVQ 325
S+D T+RLW +
Sbjct: 434 LSSSADSTIRLWSTK 448
Score = 70.1 bits (170), Expect = 2e-10
Identities = 29/31 (93%), Positives = 30/31 (96%)
Frame = +2
Query: 248 CVRWHANCNYIATGSSDKTVRLWDVQSGECV 340
CV+WH NCNYIATGSSDKTVRLWDVQSGECV
Sbjct: 507 CVQWHINCNYIATGSSDKTVRLWDVQSGECV 537