BLASTX nr result
ID: Coptis24_contig00015333
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00015333 (355 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002876899.1| nonsense-mediated mRNA decay NMD3 family pro... 98 6e-19 dbj|BAH57009.1| AT2G03820 [Arabidopsis thaliana] 98 6e-19 ref|NP_178476.1| nonsense-mediated mRNA decay protein 3 [Arabido... 98 6e-19 ref|XP_003553064.1| PREDICTED: 60S ribosomal export protein NMD3... 94 9e-18 ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|2... 94 9e-18 >ref|XP_002876899.1| nonsense-mediated mRNA decay NMD3 family protein [Arabidopsis lyrata subsp. lyrata] gi|297322737|gb|EFH53158.1| nonsense-mediated mRNA decay NMD3 family protein [Arabidopsis lyrata subsp. lyrata] Length = 516 Score = 98.2 bits (243), Expect = 6e-19 Identities = 43/60 (71%), Positives = 53/60 (88%) Frame = +3 Query: 159 LSMDEDSGMFRVPQTIGSVLCCKCGISIAPNAANMCVRCLRSKVDITKGLQKSLIIMFCP 338 +S+ ++SGMF V QTIGSVLCCKCG+ +APNAANMCV CLRS+VDIT+GLQKS+ I +CP Sbjct: 1 MSVMDESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCP 60 >dbj|BAH57009.1| AT2G03820 [Arabidopsis thaliana] Length = 392 Score = 98.2 bits (243), Expect = 6e-19 Identities = 43/60 (71%), Positives = 53/60 (88%) Frame = +3 Query: 159 LSMDEDSGMFRVPQTIGSVLCCKCGISIAPNAANMCVRCLRSKVDITKGLQKSLIIMFCP 338 +S+ ++SGMF V QTIGSVLCCKCG+ +APNAANMCV CLRS+VDIT+GLQKS+ I +CP Sbjct: 1 MSVMDESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCP 60 >ref|NP_178476.1| nonsense-mediated mRNA decay protein 3 [Arabidopsis thaliana] gi|4582430|gb|AAD24816.1| putative nonsense-mediated mRNA decay protein [Arabidopsis thaliana] gi|20466624|gb|AAM20629.1| putative nonsense-mediated mRNA decay protein [Arabidopsis thaliana] gi|22136400|gb|AAM91278.1| putative nonsense-mediated mRNA decay protein [Arabidopsis thaliana] gi|330250660|gb|AEC05754.1| nonsense-mediated mRNA decay protein 3 [Arabidopsis thaliana] Length = 516 Score = 98.2 bits (243), Expect = 6e-19 Identities = 43/60 (71%), Positives = 53/60 (88%) Frame = +3 Query: 159 LSMDEDSGMFRVPQTIGSVLCCKCGISIAPNAANMCVRCLRSKVDITKGLQKSLIIMFCP 338 +S+ ++SGMF V QTIGSVLCCKCG+ +APNAANMCV CLRS+VDIT+GLQKS+ I +CP Sbjct: 1 MSVMDESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCP 60 >ref|XP_003553064.1| PREDICTED: 60S ribosomal export protein NMD3-like [Glycine max] Length = 510 Score = 94.4 bits (233), Expect = 9e-18 Identities = 42/62 (67%), Positives = 51/62 (82%) Frame = +3 Query: 165 MDEDSGMFRVPQTIGSVLCCKCGISIAPNAANMCVRCLRSKVDITKGLQKSLIIMFCPSV 344 M ++SGMF V QTIGSVLCCKCGI + PNAANMCV+CLRS+VDIT+GL K L+++ CP Sbjct: 7 MAQESGMFMVSQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPEC 66 Query: 345 RS 350 S Sbjct: 67 ES 68 >ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|222848999|gb|EEE86546.1| predicted protein [Populus trichocarpa] Length = 511 Score = 94.4 bits (233), Expect = 9e-18 Identities = 41/58 (70%), Positives = 52/58 (89%) Frame = +3 Query: 165 MDEDSGMFRVPQTIGSVLCCKCGISIAPNAANMCVRCLRSKVDITKGLQKSLIIMFCP 338 M E++GMF V QTIGSVLCCKCGI + PNAANMCV+CLRS+VDIT+GL+K++I++ CP Sbjct: 1 MAEEAGMFMVHQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLKKNVILLHCP 58