BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015333
         (355 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002876899.1| nonsense-mediated mRNA decay NMD3 family pro...    98   6e-19
dbj|BAH57009.1| AT2G03820 [Arabidopsis thaliana]                       98   6e-19
ref|NP_178476.1| nonsense-mediated mRNA decay protein 3 [Arabido...    98   6e-19
ref|XP_003553064.1| PREDICTED: 60S ribosomal export protein NMD3...    94   9e-18
ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|2...    94   9e-18

>ref|XP_002876899.1| nonsense-mediated mRNA decay NMD3 family protein [Arabidopsis
           lyrata subsp. lyrata] gi|297322737|gb|EFH53158.1|
           nonsense-mediated mRNA decay NMD3 family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 516

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 43/60 (71%), Positives = 53/60 (88%)
 Frame = +3

Query: 159 LSMDEDSGMFRVPQTIGSVLCCKCGISIAPNAANMCVRCLRSKVDITKGLQKSLIIMFCP 338
           +S+ ++SGMF V QTIGSVLCCKCG+ +APNAANMCV CLRS+VDIT+GLQKS+ I +CP
Sbjct: 1   MSVMDESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCP 60


>dbj|BAH57009.1| AT2G03820 [Arabidopsis thaliana]
          Length = 392

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 43/60 (71%), Positives = 53/60 (88%)
 Frame = +3

Query: 159 LSMDEDSGMFRVPQTIGSVLCCKCGISIAPNAANMCVRCLRSKVDITKGLQKSLIIMFCP 338
           +S+ ++SGMF V QTIGSVLCCKCG+ +APNAANMCV CLRS+VDIT+GLQKS+ I +CP
Sbjct: 1   MSVMDESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCP 60


>ref|NP_178476.1| nonsense-mediated mRNA decay protein 3 [Arabidopsis thaliana]
           gi|4582430|gb|AAD24816.1| putative nonsense-mediated
           mRNA decay protein [Arabidopsis thaliana]
           gi|20466624|gb|AAM20629.1| putative nonsense-mediated
           mRNA decay protein [Arabidopsis thaliana]
           gi|22136400|gb|AAM91278.1| putative nonsense-mediated
           mRNA decay protein [Arabidopsis thaliana]
           gi|330250660|gb|AEC05754.1| nonsense-mediated mRNA decay
           protein 3 [Arabidopsis thaliana]
          Length = 516

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 43/60 (71%), Positives = 53/60 (88%)
 Frame = +3

Query: 159 LSMDEDSGMFRVPQTIGSVLCCKCGISIAPNAANMCVRCLRSKVDITKGLQKSLIIMFCP 338
           +S+ ++SGMF V QTIGSVLCCKCG+ +APNAANMCV CLRS+VDIT+GLQKS+ I +CP
Sbjct: 1   MSVMDESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCP 60


>ref|XP_003553064.1| PREDICTED: 60S ribosomal export protein NMD3-like [Glycine max]
          Length = 510

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 42/62 (67%), Positives = 51/62 (82%)
 Frame = +3

Query: 165 MDEDSGMFRVPQTIGSVLCCKCGISIAPNAANMCVRCLRSKVDITKGLQKSLIIMFCPSV 344
           M ++SGMF V QTIGSVLCCKCGI + PNAANMCV+CLRS+VDIT+GL K L+++ CP  
Sbjct: 7   MAQESGMFMVSQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPEC 66

Query: 345 RS 350
            S
Sbjct: 67  ES 68


>ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|222848999|gb|EEE86546.1|
           predicted protein [Populus trichocarpa]
          Length = 511

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 41/58 (70%), Positives = 52/58 (89%)
 Frame = +3

Query: 165 MDEDSGMFRVPQTIGSVLCCKCGISIAPNAANMCVRCLRSKVDITKGLQKSLIIMFCP 338
           M E++GMF V QTIGSVLCCKCGI + PNAANMCV+CLRS+VDIT+GL+K++I++ CP
Sbjct: 1   MAEEAGMFMVHQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLKKNVILLHCP 58