BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015288
         (373 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                123   1e-26
gb|AAG50898.1|AC068901_7 hypothetical protein [Arabidopsis thali...   122   4e-26
gb|AAK38382.1|AC079028_6 hypothetical protein [Arabidopsis thali...   122   4e-26
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   120   9e-26
gb|AAY99339.1| pol-polyprotein [Silene latifolia]                     120   1e-25

>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  123 bits (309), Expect = 1e-26
 Identities = 57/119 (47%), Positives = 84/119 (70%)
 Frame = -3

Query: 371  EGNGQAEASNKIIMDNLKRKLEDRKGAWADELNHVLWAYRTTPRTSTKESPFAMAYGVEA 192
            +GN QAEA+NK+I+  LK+ L+D KG W +EL HVLWAYRTTPR ST E+PF+M YG+EA
Sbjct: 919  QGNSQAEATNKVILAGLKKHLDDAKGRWVEELPHVLWAYRTTPRRSTGETPFSMTYGMEA 978

Query: 191  VIPVKMIEETTRTRAVERGLNENILATELDIMEEKRDTARIRLEEYHRRLQRQYDKRVK 15
            VIP+++   T +        N ++L   L+ +EE+R+ A +++  Y ++L++ YDK VK
Sbjct: 979  VIPLELGFPTLKFDQYNNVTNHDMLHDSLNTIEERREVASVKMGSYQQKLKQAYDKGVK 1037


>gb|AAG50898.1|AC068901_7 hypothetical protein [Arabidopsis thaliana]
          Length = 243

 Score =  122 bits (305), Expect = 4e-26
 Identities = 57/125 (45%), Positives = 86/125 (68%), Gaps = 2/125 (1%)
 Frame = -3

Query: 371 EGNGQAEASNKIIMDNLKRKLEDRKGAWADELNHVLWAYRTTPRTSTKESPFAMAYGVEA 192
           +GNGQAEA+NK I+ N+K+ L+ +K  W+D L+ VLWAYRTTPR ST+E+PF++AYG+EA
Sbjct: 94  QGNGQAEAANKAILSNIKKILDSKKSMWSDVLHGVLWAYRTTPRKSTQETPFSLAYGLEA 153

Query: 191 VIPVKMIEETTRTRA--VERGLNENILATELDIMEEKRDTARIRLEEYHRRLQRQYDKRV 18
           VIP+  I  + R  A      +N  +L   +D ++E+RD A IR++ Y + + R Y+  +
Sbjct: 154 VIPIVTIIPSVRRTASHANSDMNTQMLRDNMDFIDERRDQAMIRVQNYQQAVTRYYNSNI 213

Query: 17  KPQEF 3
           K + F
Sbjct: 214 KIRRF 218


>gb|AAK38382.1|AC079028_6 hypothetical protein [Arabidopsis thaliana]
          Length = 257

 Score =  122 bits (305), Expect = 4e-26
 Identities = 57/125 (45%), Positives = 86/125 (68%), Gaps = 2/125 (1%)
 Frame = -3

Query: 371 EGNGQAEASNKIIMDNLKRKLEDRKGAWADELNHVLWAYRTTPRTSTKESPFAMAYGVEA 192
           +GNGQAEA+NK I+ N+K+ L+ +K  W+D L+ VLWAYRTTPR ST+E+PF++AYG+EA
Sbjct: 108 QGNGQAEAANKAILSNIKKILDSKKSMWSDVLHGVLWAYRTTPRKSTQETPFSLAYGLEA 167

Query: 191 VIPVKMIEETTRTRA--VERGLNENILATELDIMEEKRDTARIRLEEYHRRLQRQYDKRV 18
           VIP+  I  + R  A      +N  +L   +D ++E+RD A IR++ Y + + R Y+  +
Sbjct: 168 VIPIVTIIPSVRRTASHANSDMNTQMLRDNMDFIDERRDQAMIRVQNYQQAVTRYYNSNI 227

Query: 17  KPQEF 3
           K + F
Sbjct: 228 KIRRF 232


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  120 bits (302), Expect = 9e-26
 Identities = 58/123 (47%), Positives = 87/123 (70%), Gaps = 2/123 (1%)
 Frame = -3

Query: 365  NGQAEASNKIIMDNLKRKLEDRKGAWADELNHVLWAYRTTPRTSTKESPFAMAYGVEAVI 186
            NGQAEA+NK I+D LK++L+++KGAWADEL+ VLW+YRTTPR ST  +PF++ YG+EA+ 
Sbjct: 1600 NGQAEATNKTILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALA 1659

Query: 185  PVKMIEETTRTRAV--ERGLNENILATELDIMEEKRDTARIRLEEYHRRLQRQYDKRVKP 12
            P +    T R   +  +  LN+ +L   LD +EE+RD A +R++ Y +   + Y+K+VK 
Sbjct: 1660 PCEAGLPTVRRSMLINDPTLNDQMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVKN 1719

Query: 11   QEF 3
            + F
Sbjct: 1720 RLF 1722


>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
          Length = 1307

 Score =  120 bits (301), Expect = 1e-25
 Identities = 59/122 (48%), Positives = 81/122 (66%)
 Frame = -3

Query: 371  EGNGQAEASNKIIMDNLKRKLEDRKGAWADELNHVLWAYRTTPRTSTKESPFAMAYGVEA 192
            + NGQAEA+NK I++ LK+K+ED KG WADEL  VLW+ RTT + +T  SPF + YG EA
Sbjct: 1120 QSNGQAEAANKTILNGLKKKVEDLKGRWADELPGVLWSLRTTEKEATGYSPFHLVYGSEA 1179

Query: 191  VIPVKMIEETTRTRAVERGLNENILATELDIMEEKRDTARIRLEEYHRRLQRQYDKRVKP 12
            V+P++ +  T RT       NE  L   LD++EE RDTAR+ L  Y  R++R Y+ RV  
Sbjct: 1180 VLPIEAVVPTFRTATFNPVENEEGLKASLDLVEESRDTARLNLAVYQNRMRRAYNHRVHK 1239

Query: 11   QE 6
            ++
Sbjct: 1240 RD 1241