BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015170
         (250 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003543065.1| PREDICTED: splicing factor 3B subunit 2-like...    75   5e-12
ref|XP_003545890.1| PREDICTED: splicing factor 3B subunit 2-like...    75   7e-12
ref|XP_003593554.1| Splicing factor 3B subunit [Medicago truncat...    74   1e-11
ref|XP_003541544.1| PREDICTED: splicing factor 3B subunit 2-like...    70   2e-10
ref|XP_002316630.1| predicted protein [Populus trichocarpa] gi|2...    70   2e-10

>ref|XP_003543065.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]
          Length = 575

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 44/83 (53%), Positives = 50/83 (60%)
 Frame = +1

Query: 1   RKQKKNKSKEENGNIIPKTESLXXXXXXAKENADPQQFVENVEIEYVAEKADLEGSSYEE 180
           RKQKKN    E        ES       AKEN D +Q VE +EIEYV EKA+L     EE
Sbjct: 36  RKQKKNNKASEAPVPNSSEES-----DDAKENNDSKQLVEQIEIEYVPEKAELVEGMDEE 90

Query: 181 FAKVFEKFTFTVTSALEDEEKKD 249
           F K+FEKFTFT  +ALED +KKD
Sbjct: 91  FRKIFEKFTFTDATALEDTDKKD 113


>ref|XP_003545890.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]
          Length = 575

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 39/83 (46%), Positives = 51/83 (61%)
 Frame = +1

Query: 1   RKQKKNKSKEENGNIIPKTESLXXXXXXAKENADPQQFVENVEIEYVAEKADLEGSSYEE 180
           R++++ K K+ N        +       AKEN D +Q VE +EIEYV EKA+L     EE
Sbjct: 31  RRRRRRKQKKSNKASEAPVPNSAEESDDAKENDDSKQLVEQIEIEYVPEKAELVEGMDEE 90

Query: 181 FAKVFEKFTFTVTSALEDEEKKD 249
           F K+FEKFTFT  +ALED +KKD
Sbjct: 91  FRKIFEKFTFTDATALEDTDKKD 113


>ref|XP_003593554.1| Splicing factor 3B subunit [Medicago truncatula]
           gi|355482602|gb|AES63805.1| Splicing factor 3B subunit
           [Medicago truncatula]
          Length = 578

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 37/83 (44%), Positives = 51/83 (61%)
 Frame = +1

Query: 1   RKQKKNKSKEENGNIIPKTESLXXXXXXAKENADPQQFVENVEIEYVAEKADLEGSSYEE 180
           R++++ K+K+ N        ++      AKEN DP+Q  E VEIEYV EK DL     EE
Sbjct: 22  RRRRRGKAKKNNKASEQPASNIGEESDNAKENTDPKQVFEQVEIEYVPEKVDLYEGMDEE 81

Query: 181 FAKVFEKFTFTVTSALEDEEKKD 249
           F K+FEKF+FT  +A E+ +KKD
Sbjct: 82  FRKIFEKFSFTEVAASEETDKKD 104


>ref|XP_003541544.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]
          Length = 577

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 37/83 (44%), Positives = 49/83 (59%)
 Frame = +1

Query: 1   RKQKKNKSKEENGNIIPKTESLXXXXXXAKENADPQQFVENVEIEYVAEKADLEGSSYEE 180
           R+++K K K    +  P  +        A EN DPQQ VE VEIEYV E+A+L+    EE
Sbjct: 37  RRRRKQKKKNNKASKEPTEDG-----DDATENTDPQQVVEQVEIEYVPERAELDEGLDEE 91

Query: 181 FAKVFEKFTFTVTSALEDEEKKD 249
           F K+FEKF+F   +  ED +KKD
Sbjct: 92  FRKIFEKFSFGEVTGSEDNDKKD 114


>ref|XP_002316630.1| predicted protein [Populus trichocarpa] gi|222859695|gb|EEE97242.1|
           predicted protein [Populus trichocarpa]
          Length = 588

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
 Frame = +1

Query: 1   RKQKKNKSKEENGNIIPK----TESLXXXXXXAKENADPQQFVENVEIEYVAEKADLEGS 168
           RKQKKNKS+  + +        +++       AKENADPQQ +E V IEYV EKA+LE  
Sbjct: 39  RKQKKNKSQAPDASAAAADGDDSDAANGDGGDAKENADPQQVMEQVVIEYVPEKAELE-D 97

Query: 169 SYEEFAKVFEKFTFTVTSALEDEEKKD 249
             +EF  VFEKF F  ++  E+ +KKD
Sbjct: 98  GMDEFRNVFEKFNFLQSAGSEENDKKD 124