BLASTX nr result
ID: Coptis24_contig00015170
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00015170 (250 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003543065.1| PREDICTED: splicing factor 3B subunit 2-like... 75 5e-12 ref|XP_003545890.1| PREDICTED: splicing factor 3B subunit 2-like... 75 7e-12 ref|XP_003593554.1| Splicing factor 3B subunit [Medicago truncat... 74 1e-11 ref|XP_003541544.1| PREDICTED: splicing factor 3B subunit 2-like... 70 2e-10 ref|XP_002316630.1| predicted protein [Populus trichocarpa] gi|2... 70 2e-10 >ref|XP_003543065.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max] Length = 575 Score = 75.1 bits (183), Expect = 5e-12 Identities = 44/83 (53%), Positives = 50/83 (60%) Frame = +1 Query: 1 RKQKKNKSKEENGNIIPKTESLXXXXXXAKENADPQQFVENVEIEYVAEKADLEGSSYEE 180 RKQKKN E ES AKEN D +Q VE +EIEYV EKA+L EE Sbjct: 36 RKQKKNNKASEAPVPNSSEES-----DDAKENNDSKQLVEQIEIEYVPEKAELVEGMDEE 90 Query: 181 FAKVFEKFTFTVTSALEDEEKKD 249 F K+FEKFTFT +ALED +KKD Sbjct: 91 FRKIFEKFTFTDATALEDTDKKD 113 >ref|XP_003545890.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max] Length = 575 Score = 74.7 bits (182), Expect = 7e-12 Identities = 39/83 (46%), Positives = 51/83 (61%) Frame = +1 Query: 1 RKQKKNKSKEENGNIIPKTESLXXXXXXAKENADPQQFVENVEIEYVAEKADLEGSSYEE 180 R++++ K K+ N + AKEN D +Q VE +EIEYV EKA+L EE Sbjct: 31 RRRRRRKQKKSNKASEAPVPNSAEESDDAKENDDSKQLVEQIEIEYVPEKAELVEGMDEE 90 Query: 181 FAKVFEKFTFTVTSALEDEEKKD 249 F K+FEKFTFT +ALED +KKD Sbjct: 91 FRKIFEKFTFTDATALEDTDKKD 113 >ref|XP_003593554.1| Splicing factor 3B subunit [Medicago truncatula] gi|355482602|gb|AES63805.1| Splicing factor 3B subunit [Medicago truncatula] Length = 578 Score = 73.9 bits (180), Expect = 1e-11 Identities = 37/83 (44%), Positives = 51/83 (61%) Frame = +1 Query: 1 RKQKKNKSKEENGNIIPKTESLXXXXXXAKENADPQQFVENVEIEYVAEKADLEGSSYEE 180 R++++ K+K+ N ++ AKEN DP+Q E VEIEYV EK DL EE Sbjct: 22 RRRRRGKAKKNNKASEQPASNIGEESDNAKENTDPKQVFEQVEIEYVPEKVDLYEGMDEE 81 Query: 181 FAKVFEKFTFTVTSALEDEEKKD 249 F K+FEKF+FT +A E+ +KKD Sbjct: 82 FRKIFEKFSFTEVAASEETDKKD 104 >ref|XP_003541544.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max] Length = 577 Score = 70.1 bits (170), Expect = 2e-10 Identities = 37/83 (44%), Positives = 49/83 (59%) Frame = +1 Query: 1 RKQKKNKSKEENGNIIPKTESLXXXXXXAKENADPQQFVENVEIEYVAEKADLEGSSYEE 180 R+++K K K + P + A EN DPQQ VE VEIEYV E+A+L+ EE Sbjct: 37 RRRRKQKKKNNKASKEPTEDG-----DDATENTDPQQVVEQVEIEYVPERAELDEGLDEE 91 Query: 181 FAKVFEKFTFTVTSALEDEEKKD 249 F K+FEKF+F + ED +KKD Sbjct: 92 FRKIFEKFSFGEVTGSEDNDKKD 114 >ref|XP_002316630.1| predicted protein [Populus trichocarpa] gi|222859695|gb|EEE97242.1| predicted protein [Populus trichocarpa] Length = 588 Score = 70.1 bits (170), Expect = 2e-10 Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 4/87 (4%) Frame = +1 Query: 1 RKQKKNKSKEENGNIIPK----TESLXXXXXXAKENADPQQFVENVEIEYVAEKADLEGS 168 RKQKKNKS+ + + +++ AKENADPQQ +E V IEYV EKA+LE Sbjct: 39 RKQKKNKSQAPDASAAAADGDDSDAANGDGGDAKENADPQQVMEQVVIEYVPEKAELE-D 97 Query: 169 SYEEFAKVFEKFTFTVTSALEDEEKKD 249 +EF VFEKF F ++ E+ +KKD Sbjct: 98 GMDEFRNVFEKFNFLQSAGSEENDKKD 124