BLASTX nr result
ID: Coptis24_contig00015045
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00015045
(1245 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,... 433 e-119
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi... 410 e-112
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi... 410 e-112
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi... 405 e-111
ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containi... 375 e-101
>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 627
Score = 433 bits (1114), Expect = e-119
Identities = 228/411 (55%), Positives = 295/411 (71%), Gaps = 12/411 (2%)
Frame = +3
Query: 48 MKRAKGILASLRLAGSSFPLA-RASTVA---TQHTRILPCMLQNEGCNKYDFFNITHHHK 215
M RA+ IL SLRL S+F L+ R ST TQ T PC L E D+ NI H K
Sbjct: 1 MNRARTILVSLRL--SNFLLSTRISTTRPFLTQVTHFFPCFLSREHSYTSDYVNI--HKK 56
Query: 216 FYFSSKPNSIVE---TNEWSEELE-----HSTKLTHETVCYVLKKLDKYPLKALDFFNWA 371
Y SSKP+S+VE N+WS ELE S LTHETV YVLKKLDK P KA DFFNW
Sbjct: 57 LYSSSKPSSLVELLSVNDWSPELETQLENSSPLLTHETVIYVLKKLDKDPHKAWDFFNWV 116
Query: 372 SVQNGFKPSLTVYSLMLRILGRKETIKEFWRLLKRMKDEGCDIDEETYTTILIHFRCEKM 551
+NGFKPS +YSLMLRIL +K+++K FW L++MK++G DEETY TIL FR E+M
Sbjct: 117 CDRNGFKPSSPLYSLMLRILVKKDSMKNFWITLRKMKEQGFYTDEETYLTILGVFRKERM 176
Query: 552 TGDATGFSNYYKKMSEESATDATVKGVTDLVLESDWNDDVVRKLGELNLVLSEDFLLRVF 731
DA F +++ +M EE+A D+ VK V +V ++W+++V ++L + ++L+++F++RV
Sbjct: 177 DSDAVAFKHFFDRMVEENAMDSVVKNVVSVVSATEWSNEVEKELEGMGILLTDNFVIRVL 236
Query: 732 RALRQHPLKAFSIFRWAEKLVGYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKSAGHDM 911
+ LR +PLKA F WA K Y + +TYN I RVLG++DSI EFWSVV+E+K+AGH+M
Sbjct: 237 KELRNYPLKALQFFNWAGKCERYECNTITYNAIARVLGRDDSIGEFWSVVEEMKNAGHEM 296
Query: 912 DIDTYIKLSRHFQKGRLMNDAVELYELMMDGPFKPSAQNCNTLLKQLSLTDTPDLSLVFR 1091
DIDTYIK+SR FQK +LM DAV+LYE MMDGPFKPS Q+C+ LL+ +S ++ PDL+LVFR
Sbjct: 297 DIDTYIKISRQFQKNKLMGDAVKLYEFMMDGPFKPSVQDCSMLLRSISASNYPDLNLVFR 356
Query: 1092 VVKKYEASGHTPSKAVYDGIHRSLTSVGRFDEAENIVVTMRNAGYEPDNIT 1244
VV KYEA+G++ SKAVYDGIHRSLTS+G FDEA ++ M+ AGYEPDNIT
Sbjct: 357 VVNKYEATGNSLSKAVYDGIHRSLTSIGNFDEAAKMMKCMQTAGYEPDNIT 407
>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Glycine max]
Length = 635
Score = 410 bits (1054), Expect = e-112
Identities = 213/416 (51%), Positives = 280/416 (67%), Gaps = 17/416 (4%)
Frame = +3
Query: 48 MKRAKGILASLRLAGSSFPLARASTVATQHTRILPCMLQNEGCNKYDFFNITHH------ 209
M R K I +SLR SS A+ V ++ L N F+ +HH
Sbjct: 1 MNRVKAIASSLRTLESSL----ATRVLVTRNQVTHFSLHNP----LPLFDRSHHLRFPIT 52
Query: 210 -HKFYFSSKP--NSIVE---TNEWSEELEHSTK-----LTHETVCYVLKKLDKYPLKALD 356
HK YFS+KP NSIVE TN+WS+ LE + + HETV YV+K+LDK P KA
Sbjct: 53 HHKLYFSTKPKPNSIVELLLTNDWSQALELKLENRFPSMPHETVLYVIKRLDKNPEKASC 112
Query: 357 FFNWASVQNGFKPSLTVYSLMLRILGRKETIKEFWRLLKRMKDEGCDIDEETYTTILIHF 536
FFNW + F+PS +VYSL++RIL K+T+K+FW L+ MK+ G +DEETY TI + F
Sbjct: 113 FFNWVCKKVWFRPSCSVYSLIVRILAAKDTMKQFWVTLRMMKENGFFLDEETYLTISVGF 172
Query: 537 RCEKMTGDATGFSNYYKKMSEESATDATVKGVTDLVLESDWNDDVVRKLGELNLVLSEDF 716
+ EKM D+ +++Y +M EE+A + V V ++ S+W D+VV +L +L + LS++F
Sbjct: 173 KREKMDSDSVALTHFYNRMLEENAMQSVVSNVVGIISRSEWGDEVVGELAKLEIQLSDNF 232
Query: 717 LLRVFRALRQHPLKAFSIFRWAEKLVGYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKS 896
++RV + LR+ PLKA+ F W K GY HD VTYN + RVL + +SI+EFWSV++E+K
Sbjct: 233 VIRVLKELRKTPLKAYKFFHWVGKQSGYEHDTVTYNAVARVLPRAESIEEFWSVIEEMKR 292
Query: 897 AGHDMDIDTYIKLSRHFQKGRLMNDAVELYELMMDGPFKPSAQNCNTLLKQLSLTDTPDL 1076
GH++DIDTYIK++R Q+ R+M DAV+LYELMMDG KP Q+CN LLK +S D P+L
Sbjct: 293 VGHELDIDTYIKITRQLQRNRMMEDAVKLYELMMDGSCKPLVQDCNMLLKSISANDKPNL 352
Query: 1077 SLVFRVVKKYEASGHTPSKAVYDGIHRSLTSVGRFDEAENIVVTMRNAGYEPDNIT 1244
LVFRV KKYE++GHT SKA+YDGIHRSLTS G FDEAENIV TMRNAGYEPDNIT
Sbjct: 353 DLVFRVAKKYESTGHTLSKAIYDGIHRSLTSAGNFDEAENIVRTMRNAGYEPDNIT 408
Score = 94.0 bits (232), Expect = 7e-17
Identities = 91/353 (25%), Positives = 159/353 (45%), Gaps = 23/353 (6%)
Frame = +3
Query: 243 IVETNEWSEEL-----EHSTKLTHETVCYVLKKLDKYPLKALDFFNWASVQNGFKPSLTV 407
I+ +EW +E+ + +L+ V VLK+L K PLKA FF+W Q+G++
Sbjct: 207 IISRSEWGDEVVGELAKLEIQLSDNFVIRVLKELRKTPLKAYKFFHWVGKQSGYEHDTVT 266
Query: 408 YSLMLRILGRKETIKEFWRLLKRMKDEGCDIDEETYTTILIHFRCEKMTGDATGFSNYYK 587
Y+ + R+L R E+I+EFW +++ MK G ++D +TY I + +M DA Y+
Sbjct: 267 YNAVARVLPRAESIEEFWSVIEEMKRVGHELDIDTYIKITRQLQRNRMMEDAV---KLYE 323
Query: 588 KMSEESATDATVKGVTDLVLESDWNDD--------VVRKLGELNLVLSEDFLLRVFRALR 743
M + S V+ L+ ND V +K LS+ + R+L
Sbjct: 324 LMMDGSCKPL-VQDCNMLLKSISANDKPNLDLVFRVAKKYESTGHTLSKAIYDGIHRSLT 382
Query: 744 QHPLKAFSIFRWAEKLV------GYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKSAGH 905
+ F AE +V GY D +TY+ ++ L + +E V+++++S+
Sbjct: 383 -----SAGNFDEAENIVRTMRNAGYEPDNITYSQMVFGLCKMRRFEEACKVLEDMESSRC 437
Query: 906 DMDIDTYIKLSRHFQKGRLMNDAVELYELMMDGPFKPSAQNCNTL----LKQLSLTDTPD 1073
DI T+ L + ++ A+ + M++ P A + L L Q + +
Sbjct: 438 IPDIKTWTILIQGHCSANEVDKALLCFAKMIEKGCDPDADLLDVLADGFLSQKRIEGAYE 497
Query: 1074 LSLVFRVVKKYEASGHTPSKAVYDGIHRSLTSVGRFDEAENIVVTMRNAGYEP 1232
L V + +K S P +A Y + L V +F+EA ++ M++ Y P
Sbjct: 498 L--VAEISRKCRIS---PWQATYKKLIEKLLGVMKFEEALELLRLMKSHNYPP 545
>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Vitis vinifera]
Length = 631
Score = 410 bits (1054), Expect = e-112
Identities = 215/412 (52%), Positives = 287/412 (69%), Gaps = 13/412 (3%)
Frame = +3
Query: 48 MKRAKGILASLRLAGS--SFPLARASTVA---TQHTRILPCMLQNEGCNKYDFFNITHHH 212
M RAK IL S+R S S RAS++ TQ +R P + + + +
Sbjct: 1 MNRAKAILFSIRFTNSFRSTQFRRASSLCYQVTQSSRFSPSFSNQSYTSAFPYIL---YG 57
Query: 213 KFYFSSKPNSIVET---NEWSEELEH-----STKLTHETVCYVLKKLDKYPLKALDFFNW 368
K +FSSKPNSIVE N+WS+ELE S+ LTHETV YVLKKLDK P + +FFNW
Sbjct: 58 KLFFSSKPNSIVELVLENDWSDELESELEKSSSVLTHETVIYVLKKLDKDPQRTWNFFNW 117
Query: 369 ASVQNGFKPSLTVYSLMLRILGRKETIKEFWRLLKRMKDEGCDIDEETYTTILIHFRCEK 548
+ +NGF+PS +YSL+LR L E++K+FW +++MK++G ID+ETY TIL F+ K
Sbjct: 118 VTEKNGFRPSSAMYSLILRSLVHGESMKQFWVTIRKMKEQGFCIDKETYLTILGVFKKGK 177
Query: 549 MTGDATGFSNYYKKMSEESATDATVKGVTDLVLESDWNDDVVRKLGELNLVLSEDFLLRV 728
M + +++Y +M +E+A D VK V +LV S W+ +V +KLGEL S++F+L V
Sbjct: 178 MASEEVALTHFYNRMVQENAMDEVVKKVVELVTMSVWSSEVEKKLGELKNSFSDNFVLHV 237
Query: 729 FRALRQHPLKAFSIFRWAEKLVGYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKSAGHD 908
R LR +PLKA F+W + GY H ++TYN I RVLG++DSI EFWS+V+E+KS GH+
Sbjct: 238 LRELRGYPLKALRFFQWVGECPGYEHSSITYNVIARVLGRDDSIGEFWSMVEEMKSKGHE 297
Query: 909 MDIDTYIKLSRHFQKGRLMNDAVELYELMMDGPFKPSAQNCNTLLKQLSLTDTPDLSLVF 1088
MDIDTYIK+SR FQK +++ DAV+LYE+MMDGP+KPS Q+C LL+ +SL+ PDL+LVF
Sbjct: 298 MDIDTYIKISRQFQKNKMLEDAVKLYEIMMDGPYKPSVQDCTMLLRSISLSSNPDLALVF 357
Query: 1089 RVVKKYEASGHTPSKAVYDGIHRSLTSVGRFDEAENIVVTMRNAGYEPDNIT 1244
RV +KYEA G++ KAVYDGIHRSLTSVGRFDEA I+ +MR+AG EPDNIT
Sbjct: 358 RVTEKYEAVGNSLCKAVYDGIHRSLTSVGRFDEAGKIMESMRSAGCEPDNIT 409
>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Cucumis sativus]
gi|449524136|ref|XP_004169079.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Cucumis sativus]
Length = 632
Score = 405 bits (1042), Expect = e-111
Identities = 211/407 (51%), Positives = 283/407 (69%), Gaps = 8/407 (1%)
Frame = +3
Query: 48 MKRAKGILASLRLAGSSFPLARASTVATQHTRILPCMLQNEGCNKYDFFNITHHHKFYFS 227
M R I SLRLA S F + Q TR P + + F I +H +FS
Sbjct: 1 MTRRNAIFTSLRLANSFFS---TRSRYPQVTRFSPSSYVSHQ-SLVSHFTI-NHPVLFFS 55
Query: 228 SKPNSI---VETNEWSEELEHSTK-----LTHETVCYVLKKLDKYPLKALDFFNWASVQN 383
S P S+ V TN+WSE LE + LTHETV YVLK+LDK P KA +FFNWAS +N
Sbjct: 56 SNPQSLLQLVSTNDWSEMLETELETLNPTLTHETVVYVLKRLDKQPQKASEFFNWASGKN 115
Query: 384 GFKPSLTVYSLMLRILGRKETIKEFWRLLKRMKDEGCDIDEETYTTILIHFRCEKMTGDA 563
G S ++YS++LRI + E++K FW L+ MK+ G +DEETY TIL R K DA
Sbjct: 116 GSTQSSSIYSMLLRIFVQNESMKLFWITLRLMKERGFYLDEETYKTILGVLRKSKKAADA 175
Query: 564 TGFSNYYKKMSEESATDATVKGVTDLVLESDWNDDVVRKLGELNLVLSEDFLLRVFRALR 743
TG +++Y +M +++A D+ V+ V D+VL SDW++DV KL EL + LS++F++RV + LR
Sbjct: 176 TGLTHFYNRMLQQNAMDSVVQKVVDIVLGSDWSNDVPGKLEELGIALSDNFVIRVLKELR 235
Query: 744 QHPLKAFSIFRWAEKLVGYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKSAGHDMDIDT 923
PLKA S F W Y+H+ V+YN I RVLG++DSI+ FW V++E+K A H++DIDT
Sbjct: 236 NSPLKALSFFHWVGCRPDYDHNTVSYNAIARVLGRDDSIEAFWGVIEEMKHANHEIDIDT 295
Query: 924 YIKLSRHFQKGRLMNDAVELYELMMDGPFKPSAQNCNTLLKQLSLTDTPDLSLVFRVVKK 1103
YIK+SR FQK ++M +AV+LYELMMDGP+KPS Q+C+ LL+ ++ +D PDLSLV+RV KK
Sbjct: 296 YIKISRQFQKSKMMGEAVKLYELMMDGPYKPSLQDCSVLLRTIAASDNPDLSLVYRVAKK 355
Query: 1104 YEASGHTPSKAVYDGIHRSLTSVGRFDEAENIVVTMRNAGYEPDNIT 1244
+EA+G++ SKA+YDGIHRSLTS G+FD+AENIV +MRNAGYEPDN+T
Sbjct: 356 FEATGYSLSKAMYDGIHRSLTSTGKFDDAENIVKSMRNAGYEPDNVT 402
Score = 91.3 bits (225), Expect = 5e-16
Identities = 89/351 (25%), Positives = 159/351 (45%), Gaps = 21/351 (5%)
Frame = +3
Query: 243 IVETNEWSEEL-----EHSTKLTHETVCYVLKKLDKYPLKALDFFNWASVQNGFKPSLTV 407
IV ++WS ++ E L+ V VLK+L PLKAL FF+W + + +
Sbjct: 201 IVLGSDWSNDVPGKLEELGIALSDNFVIRVLKELRNSPLKALSFFHWVGCRPDYDHNTVS 260
Query: 408 YSLMLRILGRKETIKEFWRLLKRMKDEGCDIDEETYTTILIHFRCEKMTGDATGFSNYYK 587
Y+ + R+LGR ++I+ FW +++ MK +ID +TY I F+ KM G+A Y+
Sbjct: 261 YNAIARVLGRDDSIEAFWGVIEEMKHANHEIDIDTYIKISRQFQKSKMMGEAV---KLYE 317
Query: 588 KMSE----ESATDATVKGVTDLVLESDWND-----DVVRKLGELNLVLSEDFLLRVFRAL 740
M + S D +V + + SD D V +K LS+ + R+L
Sbjct: 318 LMMDGPYKPSLQDCSV--LLRTIAASDNPDLSLVYRVAKKFEATGYSLSKAMYDGIHRSL 375
Query: 741 RQHPLKAFSIFRWAEKLV------GYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKSAG 902
+ F AE +V GY D VTY+ ++ L + ++E V+ E+++ G
Sbjct: 376 T-----STGKFDDAENIVKSMRNAGYEPDNVTYSQLVFGLCKARRLEEARKVLDEMEAQG 430
Query: 903 HDMDIDTYIKLSRHFQKGRLMNDAVELYELMMDGPFKPSAQNCNTLLKQLSLTDTPDLSL 1082
DI T+ L + ++ A+ + M++ P A + L+ + L+
Sbjct: 431 CIPDIKTWTILIQGHCNANELDIALVCFAKMIEKNCDPDADLLDVLIS--GFLNQKKLNG 488
Query: 1083 VFRVVKKYEASGHT-PSKAVYDGIHRSLTSVGRFDEAENIVVTMRNAGYEP 1232
++++ + H P +A Y + ++L V + +EA ++ M+ Y P
Sbjct: 489 AYQLLIELTNKAHVRPWQATYKQLIKNLLEVRKLEEAIALLRLMKKQNYPP 539
>ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Glycine max]
Length = 635
Score = 375 bits (964), Expect = e-101
Identities = 197/414 (47%), Positives = 264/414 (63%), Gaps = 15/414 (3%)
Frame = +3
Query: 48 MKRAKGILASLRLAGSSFPLARASTVA-------TQHTRILPCMLQNEGCNKYDFFNITH 206
M R + I+ +LR S PLA T Q T C N + F
Sbjct: 1 MNRLRAIVVNLRFLES--PLASRVTATRSLLLTRNQVTHFSLCTPSPLLDNSHHFLLPNI 58
Query: 207 HHKFYFSSKPNSIVE---TNEWSEELEHSTK-----LTHETVCYVLKKLDKYPLKALDFF 362
H YFSSKPNSIVE T++WS+ LE + +THETV YVLK+++ P KA FF
Sbjct: 59 HQNLYFSSKPNSIVELVLTSDWSKGLEQELEKCYPSMTHETVVYVLKRMEANPEKAWCFF 118
Query: 363 NWASVQNGFKPSLTVYSLMLRILGRKETIKEFWRLLKRMKDEGCDIDEETYTTILIHFRC 542
NW S + ++PS ++Y L+LR+L +ETIK FW L+ MK +G DEE Y IL F+
Sbjct: 119 NWVSAKEWYRPSSSLYGLILRVLATEETIKLFWITLRTMKTKGFYFDEEMYFPILAGFKR 178
Query: 543 EKMTGDATGFSNYYKKMSEESATDATVKGVTDLVLESDWNDDVVRKLGELNLVLSEDFLL 722
+ M D + +Y + +E+A V V D++ S+W D+V+ L +L + +S++F+
Sbjct: 179 KNMNKDRVSLTRFYSQGIQENAMQIVVTKVVDIISGSEWGDEVMSNLAKLEIRMSDNFVT 238
Query: 723 RVFRALRQHPLKAFSIFRWAEKLVGYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKSAG 902
RV + LR PLKA+ F W K GY HD VTYN I RVL DSI++FWSV++E+KS G
Sbjct: 239 RVLKELRNCPLKAYEFFNWVGKQSGYEHDTVTYNAIARVLASTDSIEKFWSVIEEMKSVG 298
Query: 903 HDMDIDTYIKLSRHFQKGRLMNDAVELYELMMDGPFKPSAQNCNTLLKQLSLTDTPDLSL 1082
H++DIDTYIK+S+ QK ++M DAV+LYEL MDG +KPS ++C+ LLK +S +D P+L L
Sbjct: 299 HELDIDTYIKISKKLQKNKMMEDAVKLYELTMDGSYKPSVKDCSLLLKSISASDDPNLDL 358
Query: 1083 VFRVVKKYEASGHTPSKAVYDGIHRSLTSVGRFDEAENIVVTMRNAGYEPDNIT 1244
VFRV KKYE++ HT SKA+YDGIHRSL+ G+ DEAE+IV MRNAGYEPDNIT
Sbjct: 359 VFRVSKKYESTWHTLSKAIYDGIHRSLSGAGKLDEAESIVNHMRNAGYEPDNIT 412