BLASTX nr result

ID: Coptis24_contig00015037 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00015037
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524384.1| conserved hypothetical protein [Ricinus comm...   101   5e-20
ref|XP_003631229.1| PREDICTED: uncharacterized protein LOC100262...    95   7e-18
emb|CAN74875.1| hypothetical protein VITISV_038922 [Vitis vinifera]    95   7e-18
ref|XP_002315967.1| predicted protein [Populus trichocarpa] gi|2...    94   1e-17
dbj|BAK00452.1| predicted protein [Hordeum vulgare subsp. vulgare]     92   3e-17

>ref|XP_002524384.1| conserved hypothetical protein [Ricinus communis]
           gi|223536345|gb|EEF37995.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 255

 Score =  101 bits (252), Expect = 5e-20
 Identities = 47/52 (90%), Positives = 51/52 (98%)
 Frame = +3

Query: 3   VLPGKGAGSEGELMYMRAKFERVVGSRDSEAFYMMNPDGSGGPELSIYLLRV 158
           VLPG GAGS+GELMYMRA+FERVVGS+DSEAFYMMNPDGSGGPELS+YLLRV
Sbjct: 204 VLPGNGAGSDGELMYMRARFERVVGSKDSEAFYMMNPDGSGGPELSVYLLRV 255


>ref|XP_003631229.1| PREDICTED: uncharacterized protein LOC100262757 [Vitis vinifera]
           gi|297737883|emb|CBI27084.3| unnamed protein product
           [Vitis vinifera]
          Length = 262

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 47/53 (88%), Positives = 49/53 (92%), Gaps = 1/53 (1%)
 Frame = +3

Query: 3   VLPGKG-AGSEGELMYMRAKFERVVGSRDSEAFYMMNPDGSGGPELSIYLLRV 158
           VLPG G  GSEGELMYMRAKFERVVGS+DSEAFYMMNPD +GGPELSIYLLRV
Sbjct: 210 VLPGNGETGSEGELMYMRAKFERVVGSKDSEAFYMMNPDSTGGPELSIYLLRV 262


>emb|CAN74875.1| hypothetical protein VITISV_038922 [Vitis vinifera]
          Length = 248

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 47/53 (88%), Positives = 49/53 (92%), Gaps = 1/53 (1%)
 Frame = +3

Query: 3   VLPGKG-AGSEGELMYMRAKFERVVGSRDSEAFYMMNPDGSGGPELSIYLLRV 158
           VLPG G  GSEGELMYMRAKFERVVGS+DSEAFYMMNPD +GGPELSIYLLRV
Sbjct: 196 VLPGNGETGSEGELMYMRAKFERVVGSKDSEAFYMMNPDSTGGPELSIYLLRV 248


>ref|XP_002315967.1| predicted protein [Populus trichocarpa] gi|222865007|gb|EEF02138.1|
           predicted protein [Populus trichocarpa]
          Length = 263

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 49/54 (90%), Positives = 51/54 (94%), Gaps = 2/54 (3%)
 Frame = +3

Query: 3   VLPGKGA-GSE-GELMYMRAKFERVVGSRDSEAFYMMNPDGSGGPELSIYLLRV 158
           VLPG GA GSE GELMYMRA+FERVVGS+DSEAFYMMNPDGSGGPELSIYLLRV
Sbjct: 210 VLPGNGAAGSEIGELMYMRARFERVVGSKDSEAFYMMNPDGSGGPELSIYLLRV 263


>dbj|BAK00452.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 258

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 47/54 (87%), Positives = 48/54 (88%), Gaps = 2/54 (3%)
 Frame = +3

Query: 3   VLPGKGAGS--EGELMYMRAKFERVVGSRDSEAFYMMNPDGSGGPELSIYLLRV 158
           VLP  GA    EG+LMYMRAKFERVVGSRDSEAFYMMNPDGSGGPELSIYLLRV
Sbjct: 205 VLPDDGAAGAGEGDLMYMRAKFERVVGSRDSEAFYMMNPDGSGGPELSIYLLRV 258


Top