BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014991
         (1137 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519191.1| pentatricopeptide repeat-containing protein,...   503   e-140
ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat...   472   e-131
ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   453   e-125
ref|NP_188314.1| pentatricopeptide repeat-containing protein [Ar...   436   e-120
ref|XP_002885175.1| pentatricopeptide repeat-containing protein ...   434   e-119

>ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223541506|gb|EEF43055.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 719

 Score =  503 bits (1294), Expect = e-140
 Identities = 241/378 (63%), Positives = 301/378 (79%)
 Frame = +3

Query: 3    DLFYLLNHEFEAKRTSLNQQYVVRVLQNEENALSCVRFYVWVSNVQDRLAKDQLVHRILG 182
            D F LLNHEF+AKR +LN   V  VLQN+EN L  ++FY+WVSN+    AKDQ V  +L 
Sbjct: 95   DWFLLLNHEFKAKRITLNSHSVASVLQNQENPLYPLKFYIWVSNMDPLFAKDQSVKGVLA 154

Query: 183  NRLYRNGPVVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGLAKYCTEVFGQISYLGLS 362
            N LYR GPVVLS +L+K++     RI EE++C++IGSWGRLGLAKYC E+FGQIS+LG+S
Sbjct: 155  NCLYRKGPVVLSVELLKDIKASGYRINEELLCILIGSWGRLGLAKYCDEIFGQISFLGIS 214

Query: 363  PTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEALRL 542
            P+TRLYNAVIDALVKSNSLDLAY KFQQM ADNC PDRFTYNILIHGVC+ G+VDEALRL
Sbjct: 215  PSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRL 274

Query: 543  LKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHGVFR 722
            +KQMEG GYSPNVFTYTILIDGF NAK+VDEAF++LETM+ + V+PSEAT RS +HGVFR
Sbjct: 275  VKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVFR 334

Query: 723  CLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVGKKGYIPDSAT 902
            C+   +A++L + F+ REP++ + ACDT+L CL+  +++REA  +L+  GK G+ PDSAT
Sbjct: 335  CVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIGHKPDSAT 394

Query: 903  FSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKAGMVEEGNQYLDEMV 1082
            F+I M C  K  +L+E CNI++ F EQG   GF+TY+ALIKAL+ AG V EGN Y ++MV
Sbjct: 395  FNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMV 454

Query: 1083 HDGLVSSVVSYNMLIDMF 1136
             DGL+ +V SYNM+ID F
Sbjct: 455  KDGLLCNVCSYNMVIDCF 472



 Score = 94.7 bits (234), Expect = 4e-17
 Identities = 54/185 (29%), Positives = 91/185 (49%)
 Frame = +3

Query: 354  GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 533
            G  P    ++++ID L ++  ++ A   F +M      P+  TYNILIH +C IG V  +
Sbjct: 527  GFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRS 586

Query: 534  LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 713
            ++LL++M+  G +P+VF++  LI  FC   +V++A +L  +M    + P   TY + +  
Sbjct: 587  MKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKV 646

Query: 714  VFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVGKKGYIPD 893
              +     EA +LFLS      +     C+ IL  L K      A  I +   + G + +
Sbjct: 647  FCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGILVN 706

Query: 894  SATFS 908
             A  S
Sbjct: 707  FAAIS 711



 Score = 92.8 bits (229), Expect = 1e-16
 Identities = 66/266 (24%), Positives = 114/266 (42%)
 Frame = +3

Query: 333  FGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCK 512
            F Q+   GL      YN VID   K++ +D A   F++M      P+  T+N LI G CK
Sbjct: 450  FNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCK 509

Query: 513  IGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEAT 692
             G + ++  LL  +   G+ P++FT++ +IDG C AK++++A      M    ++P+  T
Sbjct: 510  GGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVT 569

Query: 693  YRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVG 872
            Y  L+H               L  +G  P   K                     +LR + 
Sbjct: 570  YNILIHS--------------LCIIGDVPRSMK---------------------LLRKMQ 594

Query: 873  KKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKAGMVE 1052
              G  PD  +F+ L+  F +   + +   + +     G +    TY+A IK   ++G   
Sbjct: 595  TDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFN 654

Query: 1053 EGNQYLDEMVHDGLVSSVVSYNMLID 1130
            E  +    M  +G +    + N+++D
Sbjct: 655  EAKELFLSMEANGCMPDSFTCNIILD 680



 Score = 87.4 bits (215), Expect = 6e-15
 Identities = 67/299 (22%), Positives = 121/299 (40%), Gaps = 7/299 (2%)
 Frame = +3

Query: 126  VSNVQDRLAKDQL-----VHRILGNRLYRNGPVVLSADLIKEVV--GFKCRITEEIVCVM 284
            V N+ DR  +  +      +  L   LY  G V        ++V  G  C +      ++
Sbjct: 411  VCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCS--YNMV 468

Query: 285  IGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNC 464
            I  + +  +    T  F ++ Y G+ P    +N +ID   K   +  +      +     
Sbjct: 469  IDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGF 528

Query: 465  VPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQ 644
             PD FT++ +I G+C+   +++AL    +M   G SPN  TY ILI   C    V  + +
Sbjct: 529  KPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMK 588

Query: 645  LLETMREKNVAPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLA 824
            LL  M+   + P   ++ +L+    R   + +A  LF S +    I   +     +    
Sbjct: 589  LLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFC 648

Query: 825  KNSLSREAADILRMVGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGF 1001
            ++    EA ++   +   G +PDS T +I++    K         I    +E G ++ F
Sbjct: 649  QSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGILVNF 707



 Score = 75.5 bits (184), Expect = 2e-11
 Identities = 67/318 (21%), Positives = 127/318 (39%), Gaps = 35/318 (11%)
 Frame = +3

Query: 279  VMIGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPAD 458
            ++I    R G+      +  Q+  LG SP    Y  +ID    +  +D A+   + M A 
Sbjct: 257  ILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKAR 316

Query: 459  NCVPDRFTYNILIHGVCKI-----------------------------------GIVDEA 533
               P   T    IHGV +                                     +  EA
Sbjct: 317  KVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREA 376

Query: 534  LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 713
              LLK+    G+ P+  T+ I ++       ++E   +L+   E+ +    +TY +L+  
Sbjct: 377  GALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKA 436

Query: 714  VFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVGKKGYIPD 893
            ++    + E    F   V    + +  + + ++ C  K S+  +A +  + +  KG  P+
Sbjct: 437  LYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPN 496

Query: 894  SATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKAGMVEEGNQYLD 1073
              TF+ L+  + K   + ++ +++    E G      T+ ++I  L +A  +E+      
Sbjct: 497  LVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFS 556

Query: 1074 EMVHDGLVSSVVSYNMLI 1127
            EMV  GL  + V+YN+LI
Sbjct: 557  EMVMWGLSPNAVTYNILI 574



 Score = 73.9 bits (180), Expect = 7e-11
 Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 2/255 (0%)
 Frame = +3

Query: 378  YNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEALRLLKQME 557
            Y A+I AL  +  +      F QM  D  + +  +YN++I   CK  ++D+A    K+M+
Sbjct: 430  YLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQ 489

Query: 558  GSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHGVFRCLPLR 737
              G  PN+ T+  LIDG+C    + ++  LL  + E    P   T+ S++ G+ R   + 
Sbjct: 490  YKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIE 549

Query: 738  EAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVGKKGYIPDSATFSILM 917
            +A   F   V                                     G  P++ T++IL+
Sbjct: 550  DALGCFSEMV-----------------------------------MWGLSPNAVTYNILI 574

Query: 918  --VCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKAGMVEEGNQYLDEMVHDG 1091
              +C   D+    +  ++      G      ++ ALI++  + G VE+  +    M+  G
Sbjct: 575  HSLCIIGDVP--RSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLG 632

Query: 1092 LVSSVVSYNMLIDMF 1136
            L+    +Y   I +F
Sbjct: 633  LIPDNYTYVAFIKVF 647


>ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score =  472 bits (1215), Expect = e-131
 Identities = 224/379 (59%), Positives = 294/379 (77%), Gaps = 3/379 (0%)
 Frame = +3

Query: 3    DLFYLLNHEFEAKRTSLNQQYVVRVLQNEENALSCVRFYVWVSNVQDRLAKDQLVHRILG 182
            D F LLNHEF+AKR  L+ Q+VV +LQN++N LS +RFY+WVSNV   L K QL+  +L 
Sbjct: 104  DWFLLLNHEFKAKRVVLSPQFVVSILQNQDNPLSAIRFYIWVSNVDPLLVKKQLIQGVLV 163

Query: 183  NRLYRNGP---VVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGLAKYCTEVFGQISYL 353
              L+R GP   V+LS DL++++     ++TEE++C++ GSWGRLGLA YC EVFGQI  L
Sbjct: 164  RNLHREGPDRPVLLSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLL 223

Query: 354  GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 533
            GL+PTTRLYNAV+DAL+KSNSLDLAY KFQQM + NCVPDRFTYNILIHGVC++G+VDEA
Sbjct: 224  GLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEA 283

Query: 534  LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 713
            LRL+KQMEG GY PNVFTYTILIDGF NAKR  EAF++L+TM+E+NV P+EAT RSLVHG
Sbjct: 284  LRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRSLVHG 343

Query: 714  VFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVGKKGYIPD 893
            VFRC+   +A++L L FV R+  +++  CD IL CL+ NS++ EA   L   GK+GY+P 
Sbjct: 344  VFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFLIKTGKEGYVPS 403

Query: 894  SATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKAGMVEEGNQYLD 1073
            S+TF+I + C  K L+L  TC + +   + G   GF+TY+ LI+AL+KAG +E GN+Y+D
Sbjct: 404  SSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMD 463

Query: 1074 EMVHDGLVSSVVSYNMLID 1130
             +++DGL+S++ SYNM+ID
Sbjct: 464  RLINDGLISNIYSYNMVID 482



 Score =  100 bits (250), Expect = 5e-19
 Identities = 74/279 (26%), Positives = 128/279 (45%), Gaps = 2/279 (0%)
 Frame = +3

Query: 300  RLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRF 479
            +L L   CT VF      G+ P    Y  +I+AL K+  +++      ++  D  + + +
Sbjct: 417  KLDLKVTCT-VFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIY 475

Query: 480  TYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETM 659
            +YN++I  +CK   +D A  + + +   G SPN+ TY  LI GFC    +D+A +LLE +
Sbjct: 476  SYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEML 535

Query: 660  REKNVAPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILIC--LAKNS 833
             E    P   T+ SL+ G+ +      A+  F   V  + +        ILIC   A   
Sbjct: 536  LESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWD-VPPNVITYNILICSFCAIGD 594

Query: 834  LSREAADILRMVGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYI 1013
            +SR +  +LR +   G  PD+ +F+ L+  +T      +   + +     G      TY 
Sbjct: 595  VSR-STHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYG 653

Query: 1014 ALIKALFKAGMVEEGNQYLDEMVHDGLVSSVVSYNMLID 1130
            ALIK+L K+G  ++  +    M  +G      + ++  D
Sbjct: 654  ALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSD 692



 Score = 76.6 bits (187), Expect = 1e-11
 Identities = 46/160 (28%), Positives = 80/160 (50%)
 Frame = +3

Query: 282 MIGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADN 461
           +IG + R G      E+   +      P    +N++ID L +++  + A+  F +M   +
Sbjct: 515 LIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWD 574

Query: 462 CVPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAF 641
             P+  TYNILI   C IG V  +  LL+QM+  G  P+ F++  LI G+    R  +A 
Sbjct: 575 VPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAE 634

Query: 642 QLLETMREKNVAPSEATYRSLVHGVFRCLPLREAYDLFLS 761
           +L ++M    + P   TY +L+  + +     +A ++FLS
Sbjct: 635 KLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLS 674


>ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g16890, mitochondrial-like
            [Cucumis sativus]
          Length = 688

 Score =  453 bits (1165), Expect = e-125
 Identities = 218/379 (57%), Positives = 287/379 (75%), Gaps = 3/379 (0%)
 Frame = +3

Query: 3    DLFYLLNHEFEAKRTSLNQQYVVRVLQNEENALSCVRFYVWVSNVQDRLAKDQLVHRILG 182
            D F LLNHEF+AKR  L+ Q+VV +LQN++N LS +RFY+WVSNV   L K QL+  +L 
Sbjct: 104  DWFLLLNHEFKAKRVVLSPQFVVSILQNQDNPLSAIRFYIWVSNVDPLLVKKQLIQGVLV 163

Query: 183  NRLYRNGP---VVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGLAKYCTEVFGQISYL 353
              L+R GP   V+LS DL++++     ++TEE++C++ GSWGRLGLA YC EVFGQI  L
Sbjct: 164  RNLHREGPDRPVLLSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLL 223

Query: 354  GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 533
            GL+PTTRLYNAV+DAL+KSNSLDLAY KFQQM + NCVPDRFTYNILIHGVC++G+VDEA
Sbjct: 224  GLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEA 283

Query: 534  LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 713
            LRL+KQMEG GY PNVFTYTILIDGF NAKR  E F++L+TM+E+NV P+EAT RSLVHG
Sbjct: 284  LRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLVHG 343

Query: 714  VFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVGKKGYIPD 893
            VFRC+   +A++L L FV R+  +++  CD IL CL+ NS++ EA           + P 
Sbjct: 344  VFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAV---------MFXPS 394

Query: 894  SATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKAGMVEEGNQYLD 1073
            S+TF+I + C  K L+L  TC + +   + G   GF+TY+ LI+AL+KAG +E GN+Y+D
Sbjct: 395  SSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMD 454

Query: 1074 EMVHDGLVSSVVSYNMLID 1130
             +++DGL+S++ SYNM+ID
Sbjct: 455  RLINDGLISNIYSYNMVID 473



 Score =  100 bits (250), Expect = 5e-19
 Identities = 74/279 (26%), Positives = 128/279 (45%), Gaps = 2/279 (0%)
 Frame = +3

Query: 300  RLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRF 479
            +L L   CT VF      G+ P    Y  +I+AL K+  +++      ++  D  + + +
Sbjct: 408  KLDLKVTCT-VFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIY 466

Query: 480  TYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETM 659
            +YN++I  +CK   +D A  + + +   G SPN+ TY  LI GFC    +D+A +LLE +
Sbjct: 467  SYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEML 526

Query: 660  REKNVAPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILIC--LAKNS 833
             E    P   T+ SL+ G+ +      A+  F   V  + +        ILIC   A   
Sbjct: 527  LESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWD-VPPNVITYNILICSFCAIGD 585

Query: 834  LSREAADILRMVGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYI 1013
            +SR +  +LR +   G  PD+ +F+ L+  +T      +   + +     G      TY 
Sbjct: 586  VSR-STHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYG 644

Query: 1014 ALIKALFKAGMVEEGNQYLDEMVHDGLVSSVVSYNMLID 1130
            ALIK+L K+G  ++  +    M  +G      + ++  D
Sbjct: 645  ALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSD 683



 Score = 76.6 bits (187), Expect = 1e-11
 Identities = 46/160 (28%), Positives = 80/160 (50%)
 Frame = +3

Query: 282 MIGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADN 461
           +IG + R G      E+   +      P    +N++ID L +++  + A+  F +M   +
Sbjct: 506 LIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWD 565

Query: 462 CVPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAF 641
             P+  TYNILI   C IG V  +  LL+QM+  G  P+ F++  LI G+    R  +A 
Sbjct: 566 VPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAE 625

Query: 642 QLLETMREKNVAPSEATYRSLVHGVFRCLPLREAYDLFLS 761
           +L ++M    + P   TY +L+  + +     +A ++FLS
Sbjct: 626 KLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLS 665



 Score = 69.3 bits (168), Expect = 2e-09
 Identities = 65/314 (20%), Positives = 124/314 (39%), Gaps = 28/314 (8%)
 Frame = +3

Query: 279  VMIGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPAD 458
            ++I    RLG+      +  Q+  LG  P    Y  +ID    +      +   Q M   
Sbjct: 269  ILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKER 328

Query: 459  NCVPDRFTYNILIHGVCKIGIVDEALRLLKQM--------------------------EG 560
            N VP+  T   L+HGV +    D+A  LL +                           E 
Sbjct: 329  NVVPNEATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEA 388

Query: 561  SGYSPNVFTYTILIDGFCNAKRVD--EAFQLLETMREKNVAPSEATYRSLVHGVFRCLPL 734
              + P+  T+ I +   C  K++D      + +   +  V P  +TY +L+  +++   +
Sbjct: 389  VMFXPSSSTFNITLA--CVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKM 446

Query: 735  REAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVGKKGYIPDSATFSIL 914
                      +    I + ++ + ++ CL K      A+++ R +  +G  P+  T++ L
Sbjct: 447  EIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTL 506

Query: 915  MVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKAGMVEEGNQYLDEMVHDGL 1094
            +  F ++ N+ +   ++    E        T+ +LI  L +A   E       EMV   +
Sbjct: 507  IGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDV 566

Query: 1095 VSSVVSYNMLIDMF 1136
              +V++YN+LI  F
Sbjct: 567  PPNVITYNILICSF 580


>ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName:
            Full=Putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial; AltName: Full=Protein
            PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
            gi|7670019|dbj|BAA94973.1| salt-inducible protein-like
            [Arabidopsis thaliana] gi|332642359|gb|AEE75880.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 659

 Score =  436 bits (1120), Expect = e-120
 Identities = 211/376 (56%), Positives = 277/376 (73%)
 Frame = +3

Query: 3    DLFYLLNHEFEAKRTSLNQQYVVRVLQNEENALSCVRFYVWVSNVQDRLAKDQLVHRILG 182
            D F +LN EF   R  LN ++V+ VLQN++N L  +RFY+WVSN     AKDQ +  +LG
Sbjct: 58   DWFLILNQEFTTHRIGLNTRFVISVLQNQDNPLHSLRFYLWVSNFDPVYAKDQSLKSVLG 117

Query: 183  NRLYRNGPVVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGLAKYCTEVFGQISYLGLS 362
            N L+R GP++LS +L+KE+     RI++E++CV+IGSWGRLGLAKYC +VF QIS+LG+ 
Sbjct: 118  NALFRKGPLLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMK 177

Query: 363  PTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEALRL 542
            P+TRLYNAVIDALVKSNSLDLAY KFQQM +D C PDRFTYNILIHGVCK G+VDEA+RL
Sbjct: 178  PSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRL 237

Query: 543  LKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHGVFR 722
            +KQME  G  PNVFTYTILIDGF  A RVDEA + LE MR + + P+EAT R+ VHG+FR
Sbjct: 238  VKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIRTFVHGIFR 297

Query: 723  CLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVGKKGYIPDSAT 902
            CLP  +A+++ + F+ ++  + +   D +L CL+ NS+++E    LR +G++GYIPDS+T
Sbjct: 298  CLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLRKIGERGYIPDSST 357

Query: 903  FSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKAGMVEEGNQYLDEMV 1082
            F+  M C  K  +L ETC I +GF  +G   GFN Y+ L++AL  A    EG++YL +M 
Sbjct: 358  FNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMG 417

Query: 1083 HDGLVSSVVSYNMLID 1130
             DGL+SSV SYN +ID
Sbjct: 418  VDGLLSSVYSYNAVID 433



 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 8/172 (4%)
 Frame = +3

Query: 354 GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 533
           G  P    ++ +I+ L ++  +  A+  F++M      P+  TYNILI   C  G  D +
Sbjct: 490 GFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRS 549

Query: 534 LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 713
           ++L  +M+ +G SP+++ Y   I  FC  ++V +A +LL+TM    + P   TY +L+  
Sbjct: 550 VKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKA 609

Query: 714 VFRCLPLREAYDLFLSFVGREPIMSKHAC--DTIL------ICLAKNSLSRE 845
           +       EA ++F S       + +H C  D+        + L K+ LSRE
Sbjct: 610 LSESGRESEAREMFSS-------IERHGCVPDSYTKRLVEELDLRKSGLSRE 654



 Score = 77.0 bits (188), Expect = 8e-12
 Identities = 49/193 (25%), Positives = 90/193 (46%)
 Frame = +3

Query: 339 QISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIG 518
           Q+   GL  +   YNAVID L K+  ++ A     +M      P+  T+N  + G    G
Sbjct: 415 QMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRG 474

Query: 519 IVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYR 698
            V +   +L+++   G+ P+V T++++I+  C AK + +AF   + M E  + P+E TY 
Sbjct: 475 DVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYN 534

Query: 699 SLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVGKK 878
            L+           +  LF            +A +  +    K    ++A ++L+ + + 
Sbjct: 535 ILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRI 594

Query: 879 GYIPDSATFSILM 917
           G  PD+ T+S L+
Sbjct: 595 GLKPDNFTYSTLI 607



 Score = 69.7 bits (169), Expect = 1e-09
 Identities = 56/252 (22%), Positives = 104/252 (41%), Gaps = 4/252 (1%)
 Frame = +3

Query: 354  GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 533
            G+ P    Y  ++ AL+ +          +QM  D  +   ++YN +I  +CK   ++ A
Sbjct: 385  GVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENA 444

Query: 534  LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 713
               L +M+  G SPN+ T+   + G+     V +   +LE +      P   T+  +++ 
Sbjct: 445  AMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINC 504

Query: 714  VFRCLPLREAYDLFLSFV--GREPIMSKHACDTILI--CLAKNSLSREAADILRMVGKKG 881
            + R   +++A+D F   +  G EP         ILI  C +     R +  +   + + G
Sbjct: 505  LCRAKEIKDAFDCFKEMLEWGIEP---NEITYNILIRSCCSTGDTDR-SVKLFAKMKENG 560

Query: 882  YIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKAGMVEEGN 1061
              PD   ++  +  F K   + +   ++      G      TY  LIKAL ++G   E  
Sbjct: 561  LSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAR 620

Query: 1062 QYLDEMVHDGLV 1097
            +    +   G V
Sbjct: 621  EMFSSIERHGCV 632



 Score = 60.5 bits (145), Expect = 8e-07
 Identities = 42/152 (27%), Positives = 64/152 (42%)
 Frame = +3

Query: 327 EVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGV 506
           + F ++   G+ P    YN +I +   +   D +   F +M  +   PD + YN  I   
Sbjct: 516 DCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSF 575

Query: 507 CKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSE 686
           CK+  V +A  LLK M   G  P+ FTY+ LI     + R  EA ++  ++      P  
Sbjct: 576 CKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDS 635

Query: 687 ATYRSLVHGVFRCLPLREAYDLFLSFVGREPI 782
            T R           L E  DL  S + RE +
Sbjct: 636 YTKR-----------LVEELDLRKSGLSRETV 656


>ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297331015|gb|EFH61434.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 653

 Score =  434 bits (1115), Expect = e-119
 Identities = 212/376 (56%), Positives = 279/376 (74%)
 Frame = +3

Query: 3    DLFYLLNHEFEAKRTSLNQQYVVRVLQNEENALSCVRFYVWVSNVQDRLAKDQLVHRILG 182
            D F +LN EF   R  LN ++V+ VLQN++N L  +RFY+WVSN     AKDQ +  +LG
Sbjct: 52   DWFLILNQEFTTHRIGLNIRFVISVLQNQDNPLHSLRFYLWVSNTDPVYAKDQSLKSVLG 111

Query: 183  NRLYRNGPVVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGLAKYCTEVFGQISYLGLS 362
            N L+R GP++LS +L+KE+     RIT+E++CV+IGSWGRLGLAKYC +VF QIS+LG+ 
Sbjct: 112  NALFRKGPLLLSMELLKEIRESGYRITDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMK 171

Query: 363  PTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEALRL 542
            P+TRLYNAVIDALVKSNSL+LAY KFQQM +D+C PDRFTYNILIHGVCK G+VDEA+RL
Sbjct: 172  PSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRFTYNILIHGVCKKGVVDEAIRL 231

Query: 543  LKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHGVFR 722
            +KQME  G  PNVFTYTILIDGF  A R++EA + LE M+ + + P+EAT R+LVHG+FR
Sbjct: 232  VKQMEREGNRPNVFTYTILIDGFLIAGRIEEALKQLEMMQVRKLNPNEATIRTLVHGIFR 291

Query: 723  CLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVGKKGYIPDSAT 902
            CLP  EA+++ L F+ +  I+ + A DT+L CL+ NS+++E A  LR  G++GYIPDS+T
Sbjct: 292  CLPPCEAFEVLLGFMEKNSILQRVAYDTVLYCLSNNSMAKETALFLRKTGERGYIPDSST 351

Query: 903  FSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKAGMVEEGNQYLDEMV 1082
            F+  M C  K  +L ETC I + F  +G   GFN Y+ L++AL  A     G++YL +M 
Sbjct: 352  FNAAMNCLLKGHHLVETCGIFDCFVSRGAKPGFNGYLVLVQALLNAQRFSAGDRYLKQMG 411

Query: 1083 HDGLVSSVVSYNMLID 1130
             DGL+SSV +YN +ID
Sbjct: 412  GDGLLSSVYTYNAVID 427



 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 45/149 (30%), Positives = 75/149 (50%)
 Frame = +3

Query: 354 GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 533
           G +P    ++ +I+ L ++  +  A+  F++M      P+  TYNILI   C  G    +
Sbjct: 484 GCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRSSCSTGDTGRS 543

Query: 534 LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 713
           ++L   M+ SG SPN++ Y  +I  FC  K+V +A +LL+TM    + P   TY +L+  
Sbjct: 544 VKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLKPDNFTYSTLIKA 603

Query: 714 VFRCLPLREAYDLFLSFVGREPIMSKHAC 800
           +       EA ++F S       M +H C
Sbjct: 604 LSESGRESEAREMFSS-------MERHGC 625



 Score = 76.3 bits (186), Expect = 1e-11
 Identities = 48/188 (25%), Positives = 90/188 (47%)
 Frame = +3

Query: 354 GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 533
           GL  +   YNAVID L K+   + A     +M      P+  T+N  + G    G V + 
Sbjct: 414 GLLSSVYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSGYSAGGDVKKV 473

Query: 534 LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 713
             +++++   G +P+V T++++I+  C AK + +AF   + M E  + P+E TY  L+  
Sbjct: 474 HGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRS 533

Query: 714 VFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVGKKGYIPD 893
                    +  LF +        + +A + I+    K    ++A ++L+ + + G  PD
Sbjct: 534 SCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLKPD 593

Query: 894 SATFSILM 917
           + T+S L+
Sbjct: 594 NFTYSTLI 601



 Score = 70.9 bits (172), Expect = 6e-10
 Identities = 54/256 (21%), Positives = 105/256 (41%), Gaps = 8/256 (3%)
 Frame = +3

Query: 354  GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 533
            G  P    Y  ++ AL+ +          +QM  D  +   +TYN +I  +CK    + A
Sbjct: 379  GAKPGFNGYLVLVQALLNAQRFSAGDRYLKQMGGDGLLSSVYTYNAVIDCLCKARRTEHA 438

Query: 534  LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 713
               L +M+  G SPN+ T+   + G+     V +   ++E + E    P   T+  +++ 
Sbjct: 439  AMFLTEMQDRGISPNLITFNTFLSGYSAGGDVKKVHGVVEKLLEHGCNPDVITFSLIINC 498

Query: 714  VFRCLPLREAYDLFLSFV--GREP------IMSKHACDTILICLAKNSLSREAADILRMV 869
            + R   +++A+D F   +  G +P      I+ + +C T          +  +  +   +
Sbjct: 499  LCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRSSCST--------GDTGRSVKLFANM 550

Query: 870  GKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKAGMV 1049
             + G  P+   ++ ++  F K   + +   ++      G      TY  LIKAL ++G  
Sbjct: 551  KESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRE 610

Query: 1050 EEGNQYLDEMVHDGLV 1097
             E  +    M   G V
Sbjct: 611  SEAREMFSSMERHGCV 626



 Score = 57.4 bits (137), Expect = 7e-06
 Identities = 41/152 (26%), Positives = 62/152 (40%)
 Frame = +3

Query: 327 EVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGV 506
           + F ++   G+ P    YN +I +   +     +   F  M      P+ + YN +I   
Sbjct: 510 DCFKEMLEWGIKPNEITYNILIRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSF 569

Query: 507 CKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSE 686
           CK+  V +A  LLK M   G  P+ FTY+ LI     + R  EA ++  +M      P  
Sbjct: 570 CKMKKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSMERHGCVPDS 629

Query: 687 ATYRSLVHGVFRCLPLREAYDLFLSFVGREPI 782
            T R           L E  DL  S + RE +
Sbjct: 630 YTKR-----------LVEELDLRQSGLSRETV 650