BLASTX nr result
ID: Coptis24_contig00014987
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00014987
(1108 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002458168.1| hypothetical protein SORBIDRAFT_03g028130 [S... 100 7e-31
tpg|DAA58542.1| TPA: hypothetical protein ZEAMMB73_802520 [Zea m... 100 3e-29
ref|XP_002528032.1| pentatricopeptide repeat-containing protein,... 45 2e-11
ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pen... 44 3e-10
emb|CAN82639.1| hypothetical protein VITISV_028820 [Vitis vinifera] 44 3e-10
>ref|XP_002458168.1| hypothetical protein SORBIDRAFT_03g028130 [Sorghum bicolor]
gi|241930143|gb|EES03288.1| hypothetical protein
SORBIDRAFT_03g028130 [Sorghum bicolor]
Length = 694
Score = 100 bits (248), Expect(3) = 7e-31
Identities = 55/139 (39%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
Frame = +2
Query: 407 LKEIHGFAIKQKGIIDVDSIDDDKLRASIVAGYAFHRCMSYACRLFEEISLKTSQLLISM 586
L+E+H F ++ ++ + +D D+L+ S+ AGY + YA R+F ++ + T L M
Sbjct: 208 LRELHAFVLRNAEVVGLGPVDLDRLQESLAAGYMCSSFVQYAGRVFRDVRITTCFLGNLM 267
Query: 587 ISGFIECKQTNDALCVFRDMIMQNGGEFKVVSKVPLTLLLPECSASSLTGLEIHGHAYRV 766
ISGF++ Q N AL VFR+M G E + + V LTL+LPE + ++ GLEIH +AYR
Sbjct: 268 ISGFLDTGQRNQALGVFREMAFGCGYEARHLPSVSLTLVLPEVNLATKRGLEIHAYAYRH 327
Query: 767 GFESATS--DAFIMHYSSR 817
GFE TS +A + Y+ R
Sbjct: 328 GFECDTSVCNALMAMYAKR 346
Score = 49.7 bits (117), Expect(3) = 7e-31
Identities = 27/57 (47%), Positives = 38/57 (66%)
Frame = +3
Query: 204 MGKSGIEGKVSSWNLIMSGCVRNGDGVLAFETLRRMLVSGSCLNPDSATFITLLSVI 374
M +SGI S+WN +++GCVR G+G LA E L +M+ G + P+ ATF T+L VI
Sbjct: 144 MEESGIPIGASTWNAVIAGCVRAGNGELAIELLGKMVSIGGVV-PNVATFNTVLHVI 199
Score = 32.0 bits (71), Expect(3) = 7e-31
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 67 VYVKCGCFGESIKLFERIPQRN-EVIWNSMVSGYAQNGYWIKALEAL 204
+Y G + LF+RIP+ V WN+M+ YAQ+G+ +A E +
Sbjct: 95 LYSTLGPLHRTRLLFDRIPKSTCPVPWNTMILRYAQDGFLDEAFELM 141
>tpg|DAA58542.1| TPA: hypothetical protein ZEAMMB73_802520 [Zea mays]
Length = 696
Score = 99.8 bits (247), Expect(3) = 3e-29
Identities = 51/127 (40%), Positives = 77/127 (60%)
Frame = +2
Query: 407 LKEIHGFAIKQKGIIDVDSIDDDKLRASIVAGYAFHRCMSYACRLFEEISLKTSQLLISM 586
L+E+H F ++ ++ + +D D+L+ S+ AGY C+ YA R+F ++ + T L M
Sbjct: 212 LRELHAFVLRNAEVVGLGPVDLDRLQESLAAGYMCSSCVQYAGRVFRDVRISTCFLGNLM 271
Query: 587 ISGFIECKQTNDALCVFRDMIMQNGGEFKVVSKVPLTLLLPECSASSLTGLEIHGHAYRV 766
ISGF++ Q N AL V R+M G E + + LTL+LPE + ++ GLEIH +AYR
Sbjct: 272 ISGFLDTGQRNQALGVLREMAFGCGHEAQHLPSASLTLVLPEVNLATKRGLEIHAYAYRH 331
Query: 767 GFESATS 787
GFE TS
Sbjct: 332 GFECDTS 338
Score = 46.2 bits (108), Expect(3) = 3e-29
Identities = 26/57 (45%), Positives = 36/57 (63%)
Frame = +3
Query: 204 MGKSGIEGKVSSWNLIMSGCVRNGDGVLAFETLRRMLVSGSCLNPDSATFITLLSVI 374
M +SGI S+WN +++GCVR +G LA E L +M+ G + P ATF T+L VI
Sbjct: 148 MEESGIPIGASTWNAVIAGCVRAENGELAIELLGKMVSVGGVV-PSVATFNTVLHVI 203
Score = 30.4 bits (67), Expect(3) = 3e-29
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 106 LFERIPQRN-EVIWNSMVSGYAQNGYWIKALEAL 204
LF+RIP+ V WN+M+ YAQ+G+ +A + +
Sbjct: 112 LFDRIPKSTYPVPWNTMILRYAQDGFLDEAFDLM 145
>ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223532562|gb|EEF34350.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 730
Score = 45.4 bits (106), Expect(3) = 2e-11
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = +1
Query: 67 VYVKCGCFGESIKLFERIPQRNEVIWNSMVSGYAQNGYWIKALEALWGSLELK 225
+Y K G + LFE + +R++V WN+M+SGYA G W +A E L+G + ++
Sbjct: 238 MYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFE-LFGKMRVE 289
Score = 38.1 bits (87), Expect(3) = 2e-11
Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Frame = +2
Query: 410 KEIHGFAIKQKGIIDVDSIDDDKLRASIVAGYAFHRCMSYACRLFEEISLKTSQLLISMI 589
+EIHG AI+ D +D+ ++ +++ Y+ + + +A LF+ K SM+
Sbjct: 350 REIHGSAIRSF----YDGVDN--VKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSML 403
Query: 590 SGFIECKQTNDALCVFRDMIMQNGGEFKVVSKVPLTLLLPECS--ASSLTGLEIHGHAY- 760
SG+ ++ +A +FR+M++ +G E + V + +LP C+ A+ G E H +
Sbjct: 404 SGYTHMDRSEEASFLFREMLL-SGIE---PNYVTIASILPLCARVANLQHGKEFHCYILR 459
Query: 761 RVGFE 775
R GF+
Sbjct: 460 RAGFK 464
Score = 31.6 bits (70), Expect(3) = 2e-11
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 204 MGKSGIEGKVSSWNLIMSGCVRNGDGVLAFETLRRMLVSGSCLNPDS-ATFITL 362
M GIE + +WN I GCV++G+ A E L M G ++ DS AT I L
Sbjct: 286 MRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYG--IDMDSVATIIGL 337
>ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330 [Vitis vinifera]
Length = 1008
Score = 44.3 bits (103), Expect(3) = 3e-10
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +1
Query: 64 DVYVKCGCFGESIKLFERIPQRNEVIWNSMVSGYAQNGYWIKALE 198
D YVKC CFG + KLF + +++ V WN M+S Y Q G K+++
Sbjct: 431 DYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVD 475
Score = 35.8 bits (81), Expect(3) = 3e-10
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 18/150 (12%)
Frame = +2
Query: 374 ILIPTDASLIWL-KEIHGFAIKQKGIIDVDSIDDDKLRASIVAGYAFHRCMSYACRLFEE 550
+++ + S++ L K+IH +K V +DD +R S++ Y M A +F+
Sbjct: 527 LVLASSLSVLGLGKQIHTQVLK------VGVLDDGFVRNSLIDMYCKCGEMEKASVIFKH 580
Query: 551 ISLKTSQL---------------LISMISGFIECKQTNDALCVFRDMIMQNGGEFKVVSK 685
+ ++S + SM+SG+++ + DAL F MI V K
Sbjct: 581 LPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQ----VEVDK 636
Query: 686 VPLTLLLPECSASSL--TGLEIHGHAYRVG 769
LT ++ C+++ + G ++HG+ ++G
Sbjct: 637 FTLTSVVSACASAGVLELGRQVHGYIQKIG 666
Score = 31.2 bits (69), Expect(3) = 3e-10
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 234 SSWNLIMSGCVRNGDGVLAFETLRRMLVSGSCLN 335
+SWN ++ G +RNG +A E L +M+ +G N
Sbjct: 486 ASWNTMIDGLMRNGCERVALELLYKMVAAGPAFN 519
>emb|CAN82639.1| hypothetical protein VITISV_028820 [Vitis vinifera]
Length = 871
Score = 44.3 bits (103), Expect(3) = 3e-10
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +1
Query: 64 DVYVKCGCFGESIKLFERIPQRNEVIWNSMVSGYAQNGYWIKALE 198
D YVKC CFG + KLF + +++ V WN M+S Y Q G K+++
Sbjct: 141 DYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVD 185
Score = 35.8 bits (81), Expect(3) = 3e-10
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Frame = +2
Query: 374 ILIPTDASLIWL-KEIHGFAIKQKGIIDVDSIDDDKLRASIVAGYAFHRCMSYACRLFEE 550
+++ + S++ L K+IH +K V +DD +R S++ Y M A +F+
Sbjct: 237 LVLASSLSVLGLGKQIHTQVLK------VGVLDDGFVRNSLIDMYCKCGEMEKASVIFKH 290
Query: 551 ISLKTSQL---------------LISMISGFIECKQTNDALCVFRDMIMQNGGEFKVVSK 685
+ ++S + SM+SG+++ DAL F MI V K
Sbjct: 291 LPRESSMMNSEESCDDAVVESVSWSSMVSGYVQNGGFEDALKTFSSMICSQ----VEVDK 346
Query: 686 VPLTLLLPECSASSL--TGLEIHGHAYRVG 769
LT ++ C+++ + G ++HG+ ++G
Sbjct: 347 FTLTSVVSACASAGVLELGRQVHGYIQKIG 376
Score = 31.2 bits (69), Expect(3) = 3e-10
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 234 SSWNLIMSGCVRNGDGVLAFETLRRMLVSGSCLN 335
+SWN ++ G +RNG +A E L +M+ +G N
Sbjct: 196 ASWNTMIDGLMRNGCERVALELLYKMVAAGPAFN 229