BLASTX nr result
ID: Coptis24_contig00014982
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00014982 (542 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containi... 244 5e-63 ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containi... 240 9e-62 ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containi... 233 1e-59 ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containi... 233 1e-59 ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea ma... 231 4e-59 >ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial [Vitis vinifera] Length = 535 Score = 244 bits (624), Expect = 5e-63 Identities = 116/173 (67%), Positives = 142/173 (82%) Frame = +2 Query: 5 TLEEMERCGIHPCVISYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALG 184 ++ EM+ G P VISYTS++EAYCR+KDFRKV+++L+EM+ KGC PNVVTYTIVMHALG Sbjct: 279 SMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALG 338 Query: 185 KAKETYEALGIYERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVT 364 K KE +AL +YE+MK + CVPDTSFY+SLIYI SKAGRL++A +F++M+K G PDV Sbjct: 339 KGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVL 398 Query: 365 TYNTMISVACAHSQVEDALKLLQEMEERLCKPDLKTYAPLLKICCRRKWMKIL 523 TYNTMIS AC HSQ EDALKLL +MEE CKPDL TY+PLLK+CCR MK+L Sbjct: 399 TYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVL 451 Score = 68.6 bits (166), Expect = 6e-10 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 2/162 (1%) Frame = +2 Query: 11 EEMERCGIHPCVISYTSLIEAYCRDKDFRKVDA--LLDEMQFKGCSPNVVTYTIVMHALG 184 E+M+ P Y+SLI Y K R DA + ++M +G P+V+TY ++ A Sbjct: 351 EKMKGSSCVPDTSFYSSLI--YILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAAC 408 Query: 185 KAKETYEALGIYERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVT 364 + +AL + +M+++ C PD + Y+ L+ +C + R++ S + + M K+ + +V Sbjct: 409 MHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVG 468 Query: 365 TYNTMISVACAHSQVEDALKLLQEMEERLCKPDLKTYAPLLK 490 TY+ ++ C ++E A +EM + P T+ LLK Sbjct: 469 TYSLLVHGLCKSGKLEHACLFFEEMVSKGLVPKDCTHKLLLK 510 Score = 68.2 bits (165), Expect = 8e-10 Identities = 38/167 (22%), Positives = 80/167 (47%) Frame = +2 Query: 17 MERCGIHPCVISYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKE 196 MER G+ ++ +L++A ++ + + E + N T+ +++H KA++ Sbjct: 214 MERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEFK-DSILLNPHTFNVLIHGWCKARK 272 Query: 197 TYEALGIYERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTYNT 376 AL MK++ PD Y S++ + ++ + + +EM + GC P+V TY Sbjct: 273 MDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTI 332 Query: 377 MISVACAHSQVEDALKLLQEMEERLCKPDLKTYAPLLKICCRRKWMK 517 ++ ++ AL++ ++M+ C PD Y+ L+ I + +K Sbjct: 333 VMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLK 379 Score = 58.9 bits (141), Expect = 5e-07 Identities = 35/134 (26%), Positives = 61/134 (45%) Frame = +2 Query: 11 EEMERCGIHPCVISYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKA 190 E+M + G P V++Y ++I A C LL +M+ C P++ TY+ ++ + Sbjct: 386 EDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCCRN 445 Query: 191 KETYEALGIYERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTY 370 + M KND + Y+ L++ K+G+L+ A F+EM G P T+ Sbjct: 446 NRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHACLFFEEMVSKGLVPKDCTH 505 Query: 371 NTMISVACAHSQVE 412 ++ S VE Sbjct: 506 KLLLKELEKKSMVE 519 >ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like [Brachypodium distachyon] Length = 570 Score = 240 bits (613), Expect = 9e-62 Identities = 110/175 (62%), Positives = 142/175 (81%) Frame = +2 Query: 5 TLEEMERCGIHPCVISYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALG 184 T++EME G P VI+YTSLIEAYC +KDF+ V A+L+EM KGC PNV+TYTIVMHALG Sbjct: 286 TMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALG 345 Query: 185 KAKETYEALGIYERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVT 364 KA T EAL +++++K++ CVPD SFYNS+IYI +AGRL++A+ +FDEM ++G P V Sbjct: 346 KAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCRTGIPPTVA 405 Query: 365 TYNTMISVACAHSQVEDALKLLQEMEERLCKPDLKTYAPLLKICCRRKWMKILFF 529 +NTMIS AC HSQ E+ALK+L +MEE+ CKPD+KTY PLLK+CC+R+WMKIL F Sbjct: 406 IFNTMISAACDHSQAENALKILVKMEEQSCKPDIKTYTPLLKLCCKRQWMKILPF 460 Score = 66.2 bits (160), Expect = 3e-09 Identities = 40/152 (26%), Positives = 73/152 (48%) Frame = +2 Query: 53 YTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKETYEALGIYERMK 232 Y +++ + K F + L+ +M GC ++ T T VM L A +A+ + +M Sbjct: 163 YNLMVDILGKFKQFDLLWGLIRQMDEIGCLVSLATMTKVMRRLAGANRWTDAIDAFNKMD 222 Query: 233 KNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTYNTMISVACAHSQVE 412 + V DT N+L+ K ++ A +F E+ + PD +++NT++ C + Sbjct: 223 QFGVVRDTKAMNALLDTLCKEKSVKRARGVFQEL-RGVVPPDESSFNTLVHGWCQARMLN 281 Query: 413 DALKLLQEMEERLCKPDLKTYAPLLKICCRRK 508 +A ++EMEE P + TY L++ C K Sbjct: 282 EARDTMKEMEEHGFSPSVITYTSLIEAYCMEK 313 Score = 57.4 bits (137), Expect = 1e-06 Identities = 35/163 (21%), Positives = 74/163 (45%) Frame = +2 Query: 14 EMERCGIHPCVISYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAK 193 +M++ G+ + +L++ C++K ++ + E++ P+ ++ ++H +A+ Sbjct: 220 KMDQFGVVRDTKAMNALLDTLCKEKSVKRARGVFQELRGV-VPPDESSFNTLVHGWCQAR 278 Query: 194 ETYEALGIYERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTYN 373 EA + M+++ P Y SLI Q I +EM GC P+V TY Sbjct: 279 MLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYT 338 Query: 374 TMISVACAHSQVEDALKLLQEMEERLCKPDLKTYAPLLKICCR 502 ++ + ++AL + +++ C PD Y ++ I R Sbjct: 339 IVMHALGKAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGR 381 >ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like [Cucumis sativus] Length = 614 Score = 233 bits (594), Expect = 1e-59 Identities = 111/175 (63%), Positives = 139/175 (79%) Frame = +2 Query: 14 EMERCGIHPCVISYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAK 193 E+E+ G+ P VISYT+ IEA+CR+KDFR VD +L +M+ KGC PNV+T+TI+MHALGKAK Sbjct: 359 EVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAK 418 Query: 194 ETYEALGIYERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTYN 373 + EAL +YE+MKK CVPD+SFY+SLI+I KAGRL + +I ++M K G TPDV TYN Sbjct: 419 QINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYN 478 Query: 374 TMISVACAHSQVEDALKLLQEMEERLCKPDLKTYAPLLKICCRRKWMKILFFSLE 538 T+IS ACAHSQ E AL LL +MEE CKPDLKTY PLLK+ CR+K MK+L F L+ Sbjct: 479 TLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLD 533 Score = 68.2 bits (165), Expect = 8e-10 Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 34/180 (18%) Frame = +2 Query: 50 SYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKETYEALGIYERM 229 SY S+++ + K+FR + L+DEM S ++ T + V+ L +A EA+ + + Sbjct: 232 SYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNI 291 Query: 230 KKNDCVPDT----------------------------------SFYNSLIYICSKAGRLQ 307 +K DT + +N LI+ KA +L Sbjct: 292 EKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLD 351 Query: 308 EASKIFDEMSKSGCTPDVTTYNTMISVACAHSQVEDALKLLQEMEERLCKPDLKTYAPLL 487 EA KI E+ KSG PDV +Y I C + K+L +ME + CKP++ T+ ++ Sbjct: 352 EAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIM 411 Score = 57.0 bits (136), Expect = 2e-06 Identities = 40/168 (23%), Positives = 79/168 (47%) Frame = +2 Query: 11 EEMERCGIHPCVISYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKA 190 E+M++ G P Y+SLI + V ++++M+ +G +P+V+TY ++ Sbjct: 428 EKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAH 487 Query: 191 KETYEALGIYERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTY 370 + AL + +M++ C PD Y+ L+ + + R++ + D M K+ + + TY Sbjct: 488 SQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTY 547 Query: 371 NTMISVACAHSQVEDALKLLQEMEERLCKPDLKTYAPLLKICCRRKWM 514 ++ C + ++ A EM + P T+ +LK RK M Sbjct: 548 AILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTF-KMLKEELERKSM 594 >ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like [Cucumis sativus] Length = 591 Score = 233 bits (594), Expect = 1e-59 Identities = 111/175 (63%), Positives = 139/175 (79%) Frame = +2 Query: 14 EMERCGIHPCVISYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAK 193 E+E+ G+ P VISYT+ IEA+CR+KDFR VD +L +M+ KGC PNV+T+TI+MHALGKAK Sbjct: 336 EVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAK 395 Query: 194 ETYEALGIYERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTYN 373 + EAL +YE+MKK CVPD+SFY+SLI+I KAGRL + +I ++M K G TPDV TYN Sbjct: 396 QINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYN 455 Query: 374 TMISVACAHSQVEDALKLLQEMEERLCKPDLKTYAPLLKICCRRKWMKILFFSLE 538 T+IS ACAHSQ E AL LL +MEE CKPDLKTY PLLK+ CR+K MK+L F L+ Sbjct: 456 TLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLD 510 Score = 68.2 bits (165), Expect = 8e-10 Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 34/180 (18%) Frame = +2 Query: 50 SYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKETYEALGIYERM 229 SY S+++ + K+FR + L+DEM S ++ T + V+ L +A EA+ + + Sbjct: 209 SYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNI 268 Query: 230 KKNDCVPDT----------------------------------SFYNSLIYICSKAGRLQ 307 +K DT + +N LI+ KA +L Sbjct: 269 EKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLD 328 Query: 308 EASKIFDEMSKSGCTPDVTTYNTMISVACAHSQVEDALKLLQEMEERLCKPDLKTYAPLL 487 EA KI E+ KSG PDV +Y I C + K+L +ME + CKP++ T+ ++ Sbjct: 329 EAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIM 388 Score = 57.0 bits (136), Expect = 2e-06 Identities = 40/168 (23%), Positives = 79/168 (47%) Frame = +2 Query: 11 EEMERCGIHPCVISYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKA 190 E+M++ G P Y+SLI + V ++++M+ +G +P+V+TY ++ Sbjct: 405 EKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAH 464 Query: 191 KETYEALGIYERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTY 370 + AL + +M++ C PD Y+ L+ + + R++ + D M K+ + + TY Sbjct: 465 SQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTY 524 Query: 371 NTMISVACAHSQVEDALKLLQEMEERLCKPDLKTYAPLLKICCRRKWM 514 ++ C + ++ A EM + P T+ +LK RK M Sbjct: 525 AILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTF-KMLKEELERKSM 571 >ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays] gi|238014984|gb|ACR38527.1| unknown [Zea mays] gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays] Length = 623 Score = 231 bits (590), Expect = 4e-59 Identities = 105/175 (60%), Positives = 138/175 (78%) Frame = +2 Query: 5 TLEEMERCGIHPCVISYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALG 184 T++EMER G P V +YT LIEAYC +KDF+ VD +LDEM KGC+PN++TYTIVMHALG Sbjct: 323 TMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTIVMHALG 382 Query: 185 KAKETYEALGIYERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVT 364 KA T EAL ++++K++ C D SFYN LIYI +AGRLQ+A+ + +EM ++G +P++T Sbjct: 383 KAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGISPNLT 442 Query: 365 TYNTMISVACAHSQVEDALKLLQEMEERLCKPDLKTYAPLLKICCRRKWMKILFF 529 T+NT+IS AC HS E+ALKLL +MEE+ C PD+KTY PLLK+CCRRKW+K L F Sbjct: 443 TFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKWVKTLLF 497 Score = 65.1 bits (157), Expect = 7e-09 Identities = 37/127 (29%), Positives = 63/127 (49%) Frame = +2 Query: 2 WTLEEMERCGIHPCVISYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHAL 181 + +EEM R GI P + ++ +LI A C LL +M+ + C+P++ TYT ++ Sbjct: 427 FVVEEMHRTGISPNLTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLC 486 Query: 182 GKAKETYEALGIYERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDV 361 + K L + M + D PD S Y L+ + GRL ++ +EM G TP Sbjct: 487 CRRKWVKTLLFLICHMFRKDITPDFSTYTLLVCWLCRNGRLTQSCLFLEEMVLKGFTPQQ 546 Query: 362 TTYNTMI 382 T++ ++ Sbjct: 547 ATFDLVL 553 Score = 62.4 bits (150), Expect = 4e-08 Identities = 38/154 (24%), Positives = 68/154 (44%) Frame = +2 Query: 14 EMERCGIHPCVISYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAK 193 +M G + + T ++ C + +M G + + +++ L K + Sbjct: 222 QMHEIGGLVSLATMTKVMRRLCGANRWSDAIDAFHKMDRFGVAKDTKAMNVLLDTLCKER 281 Query: 194 ETYEALGIYERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTYN 373 A G ++ +K PD S +N+L++ KA L+EA + EM + G +P VTTY Sbjct: 282 SVKRARGAFQALK-GTIPPDESSFNTLVHGWCKARMLKEARETMKEMERHGFSPSVTTYT 340 Query: 374 TMISVACAHSQVEDALKLLQEMEERLCKPDLKTY 475 +I C + +L EM + C P++ TY Sbjct: 341 CLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITY 374 Score = 62.0 bits (149), Expect = 6e-08 Identities = 37/162 (22%), Positives = 74/162 (45%) Frame = +2 Query: 5 TLEEMERCGIHPCVISYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALG 184 T +++++ G Y LI CR + + +++EM G SPN+ T+ ++ A Sbjct: 393 TFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGISPNLTTFNTLISAAC 452 Query: 185 KAKETYEALGIYERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVT 364 AL + +M++ C PD Y L+ +C + ++ + M + TPD + Sbjct: 453 DHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKWVKTLLFLICHMFRKDITPDFS 512 Query: 365 TYNTMISVACAHSQVEDALKLLQEMEERLCKPDLKTYAPLLK 490 TY ++ C + ++ + L+EM + P T+ +L+ Sbjct: 513 TYTLLVCWLCRNGRLTQSCLFLEEMVLKGFTPQQATFDLVLE 554 Score = 60.1 bits (144), Expect = 2e-07 Identities = 39/156 (25%), Positives = 71/156 (45%) Frame = +2 Query: 41 CVISYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKETYEALGIY 220 C SY +++ + K F + L+ +M G ++ T T VM L A +A+ + Sbjct: 196 CADSYDMMVDILGKFKQFDLMCGLIGQMHEIGGLVSLATMTKVMRRLCGANRWSDAIDAF 255 Query: 221 ERMKKNDCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTYNTMISVACAH 400 +M + DT N L+ K ++ A F + K PD +++NT++ C Sbjct: 256 HKMDRFGVAKDTKAMNVLLDTLCKERSVKRARGAFQAL-KGTIPPDESSFNTLVHGWCKA 314 Query: 401 SQVEDALKLLQEMEERLCKPDLKTYAPLLKICCRRK 508 +++A + ++EME P + TY L++ C K Sbjct: 315 RMLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEK 350