BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014974
         (437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containi...   113   2e-23
emb|CBI16904.3| unnamed protein product [Vitis vinifera]              113   2e-23
ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containi...   108   3e-22
gb|ABD96900.1| hypothetical protein [Cleome spinosa]                  106   2e-21
ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containi...   105   3e-21

>ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  113 bits (282), Expect = 2e-23
 Identities = 64/116 (55%), Positives = 75/116 (64%)
 Frame = +1

Query: 88  ITLFSNYSFIHTFSTKIQFSQIYXXXXXXXXXXXXGKQAHAHMITSGFVPTVYVTNCLIQ 267
           I+ FS+Y    T   K  FS I+            GKQAHA MI + F PTV+VTNCLIQ
Sbjct: 29  ISPFSSYQATPT--KKKTFSHIFQECSDRKALCP-GKQAHARMILTEFKPTVFVTNCLIQ 85

Query: 268 MYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYSSFGSDGLTLARSFFDIMPERDV 435
           MYIKCS L +A K+FD MP RDTVSWNAM+FGY+  G  G  +A+  FD MPERDV
Sbjct: 86  MYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIG--VAQKLFDAMPERDV 139



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = +1

Query: 193 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYSS 372
           GKQ HA +I        Y+++ L+ MY KC  +     +F++ PNRD V+WNAM+ GY+ 
Sbjct: 597 GKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQ 656

Query: 373 FG 378
            G
Sbjct: 657 HG 658


>emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  113 bits (282), Expect = 2e-23
 Identities = 64/116 (55%), Positives = 75/116 (64%)
 Frame = +1

Query: 88  ITLFSNYSFIHTFSTKIQFSQIYXXXXXXXXXXXXGKQAHAHMITSGFVPTVYVTNCLIQ 267
           I+ FS+Y    T   K  FS I+            GKQAHA MI + F PTV+VTNCLIQ
Sbjct: 29  ISPFSSYQATPT--KKKTFSHIFQECSDRKALCP-GKQAHARMILTEFKPTVFVTNCLIQ 85

Query: 268 MYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYSSFGSDGLTLARSFFDIMPERDV 435
           MYIKCS L +A K+FD MP RDTVSWNAM+FGY+  G  G  +A+  FD MPERDV
Sbjct: 86  MYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIG--VAQKLFDAMPERDV 139



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = +1

Query: 193 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYSS 372
           GKQ HA +I        Y+++ L+ MY KC  +     +F++ PNRD V+WNAM+ GY+ 
Sbjct: 550 GKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQ 609

Query: 373 FG 378
            G
Sbjct: 610 HG 611


>ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  108 bits (271), Expect = 3e-22
 Identities = 50/81 (61%), Positives = 61/81 (75%)
 Frame = +1

Query: 193 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYSS 372
           GKQAHA MI + FVPT+YV NCL+Q Y K S + YA K+FD+MP+RD +SWN MIFGY+ 
Sbjct: 25  GKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHRDVISWNTMIFGYAE 84

Query: 373 FGSDGLTLARSFFDIMPERDV 435
            G+ G   A+S FD MPERDV
Sbjct: 85  IGNMG--FAQSLFDTMPERDV 103


>gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  106 bits (264), Expect = 2e-21
 Identities = 52/81 (64%), Positives = 62/81 (76%)
 Frame = +1

Query: 193 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYSS 372
           GKQAHAHMI SGF PTV+V+NCL+Q+YI C  L YA KLFD MP RD VSWNAMIFGY++
Sbjct: 68  GKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMPLRDVVSWNAMIFGYAA 127

Query: 373 FGSDGLTLARSFFDIMPERDV 435
             S+ +  A   F++MP RDV
Sbjct: 128 --SNDMVRASLCFEMMPTRDV 146



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
 Frame = +1

Query: 193 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYS- 369
           GKQ HAH+I       VY+ + L+ MY KC  L  +  +F++ P RD V+WNAMI GY+ 
Sbjct: 630 GKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYAH 689

Query: 370 -SFGSDGLTLARS--FFDIMP 423
              G + + L  S    +IMP
Sbjct: 690 HGMGEEAIKLFESMVLMNIMP 710


>ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  105 bits (263), Expect = 3e-21
 Identities = 48/81 (59%), Positives = 59/81 (72%)
 Frame = +1

Query: 193 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSFLPYAHKLFDQMPNRDTVSWNAMIFGYSS 372
           GKQ H  MI +GFVPT+YV NCL+Q Y K S + YA K+FD+MP RD +SWN +IFGY+ 
Sbjct: 25  GKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRDVISWNTLIFGYAG 84

Query: 373 FGSDGLTLARSFFDIMPERDV 435
            G+ G   A+S FD MPERDV
Sbjct: 85  IGNMG--FAQSLFDSMPERDV 103