BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014952
         (495 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi...   144   6e-33
ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   137   7e-31
ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi...   137   7e-31
ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi...   134   8e-30
ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t...   129   2e-28

>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score =  144 bits (364), Expect = 6e-33
 Identities = 68/113 (60%), Positives = 90/113 (79%)
 Frame = +2

Query: 56  ALV*RAILASCCDQRKTRLAGVAAERLFELERHSGAYVLLSNMYAADGRYDDAKRIRKVM 235
           A+  RA+L++CC   +T +A  AA+RLF LE HSGAYVLLSN+YAA G+ D  +RIRK+M
Sbjct: 410 AIAWRALLSACCSHGQTEVAEDAAQRLFHLEHHSGAYVLLSNLYAAAGKQDHVRRIRKMM 469

Query: 236 KDRGVEKTPGCSSIDLNGLVHEFIAGEETHPQMEDIYQVLEKMNTLLDS*GLN 394
           ++RGV+K PGCSS+ +NG+VHEFIAGEETH QME++++VLEKMN  +   G N
Sbjct: 470 ENRGVDKAPGCSSVKINGVVHEFIAGEETHLQMEEVHRVLEKMNKQMGYSGFN 522


>ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  137 bits (346), Expect = 7e-31
 Identities = 66/104 (63%), Positives = 88/104 (84%)
 Frame = +2

Query: 56  ALV*RAILASCCDQRKTRLAGVAAERLFELERHSGAYVLLSNMYAADGRYDDAKRIRKVM 235
           A+  RA L++CC   +T+ A VAAERLF+LERHSGAYVLLSNMYAA G+++DAKR+R +M
Sbjct: 410 AVAWRAFLSACCKHGQTQQAEVAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVRNMM 469

Query: 236 KDRGVEKTPGCSSIDLNGLVHEFIAGEETHPQMEDIYQVLEKMN 367
           K +GVEK PGCSSI +NG+V+EFIAGE+TH  +++I+ VLE++N
Sbjct: 470 KLKGVEKVPGCSSIKVNGVVNEFIAGEKTHRHIDNIHLVLEELN 513


>ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  137 bits (346), Expect = 7e-31
 Identities = 66/104 (63%), Positives = 88/104 (84%)
 Frame = +2

Query: 56  ALV*RAILASCCDQRKTRLAGVAAERLFELERHSGAYVLLSNMYAADGRYDDAKRIRKVM 235
           A+  RA L++CC   +T+ A VAAERLF+LERHSGAYVLLSNMYAA G+++DAKR+R +M
Sbjct: 410 AVAWRAFLSACCKHGQTQQAEVAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVRNMM 469

Query: 236 KDRGVEKTPGCSSIDLNGLVHEFIAGEETHPQMEDIYQVLEKMN 367
           K +GVEK PGCSSI +NG+V+EFIAGE+TH  +++I+ VLE++N
Sbjct: 470 KLKGVEKVPGCSSIKVNGVVNEFIAGEKTHRHIDNIHLVLEELN 513


>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score =  134 bits (337), Expect = 8e-30
 Identities = 60/104 (57%), Positives = 85/104 (81%)
 Frame = +2

Query: 68  RAILASCCDQRKTRLAGVAAERLFELERHSGAYVLLSNMYAADGRYDDAKRIRKVMKDRG 247
           RA L++CC+  + +LA  AA+RL  LE HSG YVLLSN+YAA G++ DA+R+R +M+++G
Sbjct: 415 RAFLSACCNHGQAQLAERAAKRLLRLENHSGVYVLLSNLYAASGKHSDARRVRNMMRNKG 474

Query: 248 VEKTPGCSSIDLNGLVHEFIAGEETHPQMEDIYQVLEKMNTLLD 379
           V+K PGCSS++++G+V EFIAGEETHPQME+I+ VLE ++  LD
Sbjct: 475 VDKAPGCSSVEIDGVVSEFIAGEETHPQMEEIHSVLEILHMQLD 518


>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 525

 Score =  129 bits (324), Expect = 2e-28
 Identities = 58/106 (54%), Positives = 86/106 (81%), Gaps = 2/106 (1%)
 Frame = +2

Query: 68  RAILASCCDQRKTRLAGVAAERLFELERH--SGAYVLLSNMYAADGRYDDAKRIRKVMKD 241
           RA L++CC+  +T+LA +AAE++ +L+ H  SG YVLLSN+YAA G++ DA+R+R +MK 
Sbjct: 417 RAFLSACCNHGETQLAELAAEKVLQLDNHIHSGVYVLLSNLYAASGKHSDARRVRDMMKI 476

Query: 242 RGVEKTPGCSSIDLNGLVHEFIAGEETHPQMEDIYQVLEKMNTLLD 379
           +G  K PGCSS++++G++ EFIAGE+THPQME+I+ VL+KM+  LD
Sbjct: 477 KGTNKAPGCSSVEIDGVISEFIAGEKTHPQMEEIHSVLKKMHMQLD 522