BLASTX nr result
ID: Coptis24_contig00014952
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00014952 (495 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi... 144 6e-33 ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 137 7e-31 ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi... 137 7e-31 ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi... 134 8e-30 ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t... 129 2e-28 >ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Vitis vinifera] Length = 536 Score = 144 bits (364), Expect = 6e-33 Identities = 68/113 (60%), Positives = 90/113 (79%) Frame = +2 Query: 56 ALV*RAILASCCDQRKTRLAGVAAERLFELERHSGAYVLLSNMYAADGRYDDAKRIRKVM 235 A+ RA+L++CC +T +A AA+RLF LE HSGAYVLLSN+YAA G+ D +RIRK+M Sbjct: 410 AIAWRALLSACCSHGQTEVAEDAAQRLFHLEHHSGAYVLLSNLYAAAGKQDHVRRIRKMM 469 Query: 236 KDRGVEKTPGCSSIDLNGLVHEFIAGEETHPQMEDIYQVLEKMNTLLDS*GLN 394 ++RGV+K PGCSS+ +NG+VHEFIAGEETH QME++++VLEKMN + G N Sbjct: 470 ENRGVDKAPGCSSVKINGVVHEFIAGEETHLQMEEVHRVLEKMNKQMGYSGFN 522 >ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g20540-like [Cucumis sativus] Length = 532 Score = 137 bits (346), Expect = 7e-31 Identities = 66/104 (63%), Positives = 88/104 (84%) Frame = +2 Query: 56 ALV*RAILASCCDQRKTRLAGVAAERLFELERHSGAYVLLSNMYAADGRYDDAKRIRKVM 235 A+ RA L++CC +T+ A VAAERLF+LERHSGAYVLLSNMYAA G+++DAKR+R +M Sbjct: 410 AVAWRAFLSACCKHGQTQQAEVAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVRNMM 469 Query: 236 KDRGVEKTPGCSSIDLNGLVHEFIAGEETHPQMEDIYQVLEKMN 367 K +GVEK PGCSSI +NG+V+EFIAGE+TH +++I+ VLE++N Sbjct: 470 KLKGVEKVPGCSSIKVNGVVNEFIAGEKTHRHIDNIHLVLEELN 513 >ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Cucumis sativus] Length = 532 Score = 137 bits (346), Expect = 7e-31 Identities = 66/104 (63%), Positives = 88/104 (84%) Frame = +2 Query: 56 ALV*RAILASCCDQRKTRLAGVAAERLFELERHSGAYVLLSNMYAADGRYDDAKRIRKVM 235 A+ RA L++CC +T+ A VAAERLF+LERHSGAYVLLSNMYAA G+++DAKR+R +M Sbjct: 410 AVAWRAFLSACCKHGQTQQAEVAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVRNMM 469 Query: 236 KDRGVEKTPGCSSIDLNGLVHEFIAGEETHPQMEDIYQVLEKMN 367 K +GVEK PGCSSI +NG+V+EFIAGE+TH +++I+ VLE++N Sbjct: 470 KLKGVEKVPGCSSIKVNGVVNEFIAGEKTHRHIDNIHLVLEELN 513 >ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Glycine max] Length = 518 Score = 134 bits (337), Expect = 8e-30 Identities = 60/104 (57%), Positives = 85/104 (81%) Frame = +2 Query: 68 RAILASCCDQRKTRLAGVAAERLFELERHSGAYVLLSNMYAADGRYDDAKRIRKVMKDRG 247 RA L++CC+ + +LA AA+RL LE HSG YVLLSN+YAA G++ DA+R+R +M+++G Sbjct: 415 RAFLSACCNHGQAQLAERAAKRLLRLENHSGVYVLLSNLYAASGKHSDARRVRNMMRNKG 474 Query: 248 VEKTPGCSSIDLNGLVHEFIAGEETHPQMEDIYQVLEKMNTLLD 379 V+K PGCSS++++G+V EFIAGEETHPQME+I+ VLE ++ LD Sbjct: 475 VDKAPGCSSVEIDGVVSEFIAGEETHPQMEEIHSVLEILHMQLD 518 >ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula] Length = 525 Score = 129 bits (324), Expect = 2e-28 Identities = 58/106 (54%), Positives = 86/106 (81%), Gaps = 2/106 (1%) Frame = +2 Query: 68 RAILASCCDQRKTRLAGVAAERLFELERH--SGAYVLLSNMYAADGRYDDAKRIRKVMKD 241 RA L++CC+ +T+LA +AAE++ +L+ H SG YVLLSN+YAA G++ DA+R+R +MK Sbjct: 417 RAFLSACCNHGETQLAELAAEKVLQLDNHIHSGVYVLLSNLYAASGKHSDARRVRDMMKI 476 Query: 242 RGVEKTPGCSSIDLNGLVHEFIAGEETHPQMEDIYQVLEKMNTLLD 379 +G K PGCSS++++G++ EFIAGE+THPQME+I+ VL+KM+ LD Sbjct: 477 KGTNKAPGCSSVEIDGVISEFIAGEKTHPQMEEIHSVLKKMHMQLD 522