BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014914
         (382 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    63   2e-08
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    62   5e-08
ref|XP_003603678.1| hypothetical protein MTR_3g111040 [Medicago ...    57   2e-06
ref|XP_002516681.1| conserved hypothetical protein [Ricinus comm...    55   8e-06

>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
 Frame = +2

Query: 5   PGLAGWGVIFRDNNGVVHGTLIGGLGVCTCYVAECKAIVECITKAIKLGWTRLWIQTDSS 184
           P     G +FR+      G     +G  TC+ AE  A +  I K+I+     +W++TDS 
Sbjct: 23  PSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSIEYNLRDIWLETDSK 82

Query: 185 SAAAAFNTNK-VHWQCKAAWEQARHKMEWL--LISSTWRETNFSADSCARKGASLPKGVK 355
               AF++++ V WQ +  W       + +  + +   RE N  ADS A+ G SL     
Sbjct: 83  LVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGNAGADSLAKNGKSLALLTS 142

Query: 356 QWWNS 370
           QWW+S
Sbjct: 143 QWWSS 147


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
 Frame = +2

Query: 8    GLAGWGVIFRDNNGVVHGTLIGGLGVCTCYVAECKAIVECITKAIKLGWTRLWIQTDSSS 187
            GLA  G +FRD++G   G     +G+ + + AE  A +  +  A   GW  LW+++DS+S
Sbjct: 1034 GLAACGGLFRDSSGSFLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTS 1093

Query: 188  AAAAF-NTNKVHWQCKAAWEQARHKMEWLLISSTWRETNFSADSCARKG 331
            A   F N++ V W  +  W  A+     ++ S    E N  AD+ A  G
Sbjct: 1094 ALMIFSNSSLVQWLLRNRWHNAQRLGIQVISSHILHEGNRCADNLANMG 1142


>ref|XP_003603678.1| hypothetical protein MTR_3g111040 [Medicago truncatula]
           gi|355492726|gb|AES73929.1| hypothetical protein
           MTR_3g111040 [Medicago truncatula]
          Length = 132

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
 Frame = +2

Query: 11  LAGWGVIFRDNNGVVHGTLIGGLGVCTCYVAECKAIVECITKAIKLGWTRLWIQTDSSSA 190
           ++  G IFRD  G   G     +G  + +  E   ++  +  A    W+RLW+++DSSSA
Sbjct: 1   MSACGGIFRDYCGTFLGGFATNVGRVSVFEVEVLGLILAMEYAASNNWSRLWLESDSSSA 60

Query: 191 AAAFN-TNKVHWQCKAAWEQARHKMEWLLISSTWRETNFSADSCARKGASL 340
           A AF+  + +H   +  W    H   +++ S  +RE N   D     G  L
Sbjct: 61  AQAFHKPSLIHVGLRNRWHNCTHNGMFIICSHIFREGNVCVDGLTAMGHDL 111


>ref|XP_002516681.1| conserved hypothetical protein [Ricinus communis]
           gi|223544176|gb|EEF45700.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 180

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
 Frame = +2

Query: 8   GLAGWGVIFRDNNGVVHGTLIGGLGVCTCYVAECKAIVECITKAIKLGWTRLWIQTDSSS 187
           G AG G +FR+ +G V G     LG    +  E  +    + KA ++GW  LW+++DS  
Sbjct: 61  GPAGAGGLFRNPSGYVMGAFAFSLGTNCAFFVELNSASFAVCKAWEVGWLHLWLESDSIY 120

Query: 188 AAAAFNT--NKVHWQCKAAWEQARHKMEWL--LISSTWRETNFSAD 313
               F T    V W+ + AW +  H ++ +   +S  +RE N   D
Sbjct: 121 VVHLFRTKGTSVLWELRLAWSRYLHFVQQMDFRVSYVFREGNKPTD 166