BLASTX nr result
ID: Coptis24_contig00014875
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00014875 (1362 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 142 2e-31 gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 139 1e-30 gb|AAP54617.2| retrotransposon protein, putative, unclassified [... 139 1e-30 gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Ze... 139 2e-30 emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga... 139 2e-30 >gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1374 Score = 142 bits (358), Expect = 2e-31 Identities = 119/466 (25%), Positives = 184/466 (39%), Gaps = 35/466 (7%) Frame = +3 Query: 6 LLSFGVAWRIGDGLSVRAWLDAWVTGTPLELPLIQKPYNCI-------LDRVADFIDPVN 164 L+ G+ IG+G ++ W D W+ P + K + + + V D + P Sbjct: 917 LIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDG 976 Query: 165 RRWNTQLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHKGCYTVKSAY---------- 314 R WN LV +P + IL + T+D W G Y+VKS Y Sbjct: 977 RDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQR 1036 Query: 315 ----RMLQGWIDPSKYHNKKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVD 482 +LQ +DP IF IWK V KI + +W+ + + L H + Sbjct: 1037 NNPQEVLQPSLDP-------IFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLARE 1089 Query: 483 QECFLCQHEEESLHHLFIGCPFARALWFGSDLHSIIYGTNFITFKQWIEEVIYKCKEYQV 662 + C C E+++HL CPFAR W S L + G + + + V+ K Sbjct: 1090 KSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPE 1149 Query: 663 DQDLVKKFAIVFWCIWLARNSARFQSKDANIMHFLYKVKSMLKFAEDEDSTTAVRAEIAK 842 + D + W +W RN F+ ++ + LK ED D+ + + Sbjct: 1150 ESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVI------LKATEDMDAWNNRKEPQPQ 1203 Query: 843 VAIS-----ITWQFPPSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIY-GFATPFKRA 1004 V S + WQ P GW+K NTD VLRN G ++ G + Sbjct: 1204 VTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQ 1263 Query: 1005 NAILMECYALRMGLLVAKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQLL 1184 + + E ALR +L + +I E DS +L I + E S+ I+DI+ LL Sbjct: 1264 SVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLVSLI--QNEMDIPSLAPRIQDIRNLL 1321 Query: 1185 KGFRHTRMVWNYREANCVADTFARHA--------STQAASADWMTN 1298 + F + + RE N VAD AR + + + DW+ N Sbjct: 1322 RHFEEVKFQFTRREGNNVADRTARESLSLMNYDPKMYSITPDWIKN 1367 >gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa Japonica Group] Length = 1382 Score = 139 bits (351), Expect = 1e-30 Identities = 116/469 (24%), Positives = 203/469 (43%), Gaps = 22/469 (4%) Frame = +3 Query: 6 LLSFGVAWRIGDGLSVRAWLDAWVTGTPLELPLIQKPY------NCILDRVADFIDPVNR 167 LL+ GV W +GDG +++ + D W+ G +L P+ +C+++ A R Sbjct: 932 LLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFPTDATVSCLMNEDA-------R 984 Query: 168 RWNTQLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHK-GCYTVKSAYRMLQG---WI 335 W+ L+R +P++ A IL IP+ H D W PH K G Y+V+SAY + + + Sbjct: 985 CWDGDLIRSLFPVDIAKEILQIPISRHGDADFASW-PHDKLGLYSVRSAYNLARSEAFFA 1043 Query: 336 DPSK---------YHNKKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVDQE 488 D S ++K + +WK K++ +W+ A E + T L R H Sbjct: 1044 DQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDG 1103 Query: 489 CFLCQHEEESLHHLFIGCPFARALWFG-SDLHSIIYGTN-FITFKQWIEEVIYKCKEYQV 662 C C + ++++ H+F+ CPFA +W ++ G N F T +QWI + + + + Sbjct: 1104 CVFC-NRDDTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSH-- 1160 Query: 663 DQDLVKKFAIVFWCIWLARNSARFQSKDANIMHFLYKVKSMLKFAEDEDSTTAVRAEIAK 842 A+ FW IW ARN+ + + + + K+ S + ++ T Sbjct: 1161 ---ANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYVDMILKHNTKTVDGQRGGN 1217 Query: 843 VAISITWQFPPSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIYGFATPFKR-ANAILM 1019 WQ PP+ +N+D ++R+ G + + L Sbjct: 1218 TQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELA 1277 Query: 1020 ECYALRMGLLVAKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQLLKGFRH 1199 E A+R L +AK+ L+HI++ D + + I + S V +IEDIK+L F Sbjct: 1278 EALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRDR-SGVGCVIEDIKKLASTFVL 1336 Query: 1200 TRMVWNYREANCVADTFARHASTQAASADWMTNPIPHQYYIPEVIQPLL 1346 + R +N A + AR+A + ++ IP+ I+ +L Sbjct: 1337 CSFMHVNRLSNLAAHSLARNAELSTCTV--------YRSVIPDYIRDIL 1377 >gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical protein OsJ_32156 [Oryza sativa Japonica Group] Length = 1339 Score = 139 bits (351), Expect = 1e-30 Identities = 116/469 (24%), Positives = 203/469 (43%), Gaps = 22/469 (4%) Frame = +3 Query: 6 LLSFGVAWRIGDGLSVRAWLDAWVTGTPLELPLIQKPY------NCILDRVADFIDPVNR 167 LL+ GV W +GDG +++ + D W+ G +L P+ +C+++ A R Sbjct: 889 LLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFPTDATVSCLMNEDA-------R 941 Query: 168 RWNTQLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHK-GCYTVKSAYRMLQG---WI 335 W+ L+R +P++ A IL IP+ H D W PH K G Y+V+SAY + + + Sbjct: 942 CWDGDLIRSLFPVDIAKEILQIPISRHGDADFASW-PHDKLGLYSVRSAYNLARSEAFFA 1000 Query: 336 DPSK---------YHNKKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVDQE 488 D S ++K + +WK K++ +W+ A E + T L R H Sbjct: 1001 DQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDG 1060 Query: 489 CFLCQHEEESLHHLFIGCPFARALWFG-SDLHSIIYGTN-FITFKQWIEEVIYKCKEYQV 662 C C + ++++ H+F+ CPFA +W ++ G N F T +QWI + + + + Sbjct: 1061 CVFC-NRDDTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSH-- 1117 Query: 663 DQDLVKKFAIVFWCIWLARNSARFQSKDANIMHFLYKVKSMLKFAEDEDSTTAVRAEIAK 842 A+ FW IW ARN+ + + + + K+ S + ++ T Sbjct: 1118 ---ANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYVDMILKHNTKTVDGQRGGN 1174 Query: 843 VAISITWQFPPSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIYGFATPFKR-ANAILM 1019 WQ PP+ +N+D ++R+ G + + L Sbjct: 1175 TQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELA 1234 Query: 1020 ECYALRMGLLVAKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQLLKGFRH 1199 E A+R L +AK+ L+HI++ D + + I + S V +IEDIK+L F Sbjct: 1235 EALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRDR-SGVGCVIEDIKKLASTFVL 1293 Query: 1200 TRMVWNYREANCVADTFARHASTQAASADWMTNPIPHQYYIPEVIQPLL 1346 + R +N A + AR+A + ++ IP+ I+ +L Sbjct: 1294 CSFMHVNRLSNLAAHSLARNAELSTCTV--------YRSVIPDYIRDIL 1334 >gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Zea mays] Length = 472 Score = 139 bits (350), Expect = 2e-30 Identities = 113/438 (25%), Positives = 192/438 (43%), Gaps = 17/438 (3%) Frame = +3 Query: 3 NLLSFGVAWRIGDGLSVRAWLDAWVTGTPLELPLIQKPYN-CILDRVADFIDPVNRRWNT 179 +LL G+ WRIGDG V W+D W+ E + P N +L +VA+ IDP+ W+ Sbjct: 23 HLLKEGLIWRIGDGNQVNIWVDPWIPRG--ETRRVITPRNGSLLHKVAELIDPITGSWDC 80 Query: 180 QLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHKGCYTVKSAYRMLQGWIDPSKYHN- 356 +LVR + E AD IL IP++ +D+ W KG ++VKSAY + D +HN Sbjct: 81 RLVRDTFLQEDADCILAIPIQ-EGMEDTLAWHGDPKGNFSVKSAYALASRRRD---HHNN 136 Query: 357 -----------KKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVDQECFLCQ 503 + ++ SIW V KI+ +W+ A P + R ++ C +C Sbjct: 137 ADASSSISGRGENVWKSIWNVNVTNKIKMFLWRLAHNSHPVRVNIARRGIKIETLCPMCF 196 Query: 504 HEEESLHHLFIGCPFARALW---FGSDLHSIIYGTNFITFKQWIEEVIYKCKEYQVDQDL 674 +E HLF+ C + +W D +++ + + + IE ++ +E ++ Sbjct: 197 RLDEDGGHLFLKCKKVKQVWRCLCLEDTRTLL--ASKASALEVIESILTLREETKI---- 250 Query: 675 VKKFAIVFWCIWLARNSARFQSKDANIMHFLYKVKSMLKFAEDEDSTTAVRAEIAKVAIS 854 K ++ WC W ARN + + V L E + RA ++ Sbjct: 251 --KVVLLLWCWWSARNKTIQGERCGSTEEVCNTVAYHLMNMEKLQIGKSARAP----PMN 304 Query: 855 ITWQFPPSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIYGFATPFKR-ANAILMECYA 1031 + WQ PP+G+ K+N D ++R GGF+ A ++A+ E A Sbjct: 305 LKWQPPPAGFYKINCDGSYRAKSGLGSWGCIIRGHDGGFLAAGAGALTGISSALHAESVA 364 Query: 1032 LRMGLLVAKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQLLKGFRHTRMV 1211 GL +A L + +++IE D++ L A+ ++ + + + E ++ F + Sbjct: 365 CMKGLELAVFLGMQNVMIETDAAILKTALTSQEYDLSALGVVFKEIRSRMFSEFACCIVS 424 Query: 1212 WNYREANCVADTFARHAS 1265 R N VAD A H + Sbjct: 425 KCQRTCNLVADCLAAHGA 442 >emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1362 Score = 139 bits (349), Expect = 2e-30 Identities = 109/445 (24%), Positives = 181/445 (40%), Gaps = 15/445 (3%) Frame = +3 Query: 3 NLLSFGVAWRIGDGLSVRAWLDAWVTGTPLEL-PLIQKPYNCILDRVADFIDPVNRRWNT 179 +LL G+ W +G G +R W DAW+ G + P Q N L +V D ID WN Sbjct: 919 SLLLEGLKWCVGSGERIRVWEDAWILGEGAHMVPTPQADSNLDL-KVCDLIDVARGAWNI 977 Query: 180 QLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHKGCYTVKSAYRM-----LQGWIDPS 344 + V+Q + E + +L+IPL D RYW P G ++V+S Y + ++ W Sbjct: 978 ESVQQTFVEEEWELVLSIPLSRFLPDDHRYWWPSRNGIFSVRSCYWLGRLGPVRTWQLQH 1037 Query: 345 KYHNKKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVDQECFLCQHEEESLH 524 +++ +W+ + K+ + +W+ + + L H VD C +C +ES++ Sbjct: 1038 GERETELWRRVWQLQGPPKLSHFLWRACKGSLAVKGRLFSRHISVDATCSVCGDPDESIN 1097 Query: 525 HLFIGCPFARALWFGSDLHSIIYGTNFITFKQWIEEVIYKCKEYQVDQDLVKKFAIVFWC 704 H C FARA+W S S++ +F + +E + ++ + W Sbjct: 1098 HALFDCTFARAIWQVSGFASLMMNAPLSSFSERLEWL-----AKHATKEEFRTMCSFMWA 1152 Query: 705 IWLARNSARFQSK--DANIMHFLYKVKSMLKFAED--EDSTTAVRAEIAKVAISITWQFP 872 W RN F+++ DA ++ K K D E + + R S W P Sbjct: 1153 GWFCRNKLIFENELSDAPLV-----AKRFSKLVADYCEYAGSVFRGSGGGCGSSALWSPP 1207 Query: 873 PSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIYGFATPFKRANAILMECYALRMGLLV 1052 P+G K+N D + N+ G + G R A++ E A + V Sbjct: 1208 PTGMFKVNFDAHLSPNGEVGLGVVIRANDGGIKMLGVKRVAARWTAVMAEAMAALFAVEV 1267 Query: 1053 AKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQL-----LKGFRHTRMVWN 1217 A +L I++E D+ + A + K E + + + DI L + H R Sbjct: 1268 AHRLGFGRIVLEGDAMMVINA-VKHKCEGVAPMFRIFNDISSLGACLDVFSVSHVR---- 1322 Query: 1218 YREANCVADTFARHASTQAASADWM 1292 R N VA AR + W+ Sbjct: 1323 -RAGNTVAHLLARWCCDCNSEIVWL 1346