BLASTX nr result
ID: Coptis24_contig00014875
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00014875
(1362 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 142 2e-31
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 139 1e-30
gb|AAP54617.2| retrotransposon protein, putative, unclassified [... 139 1e-30
gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Ze... 139 2e-30
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga... 139 2e-30
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 142 bits (358), Expect = 2e-31
Identities = 119/466 (25%), Positives = 184/466 (39%), Gaps = 35/466 (7%)
Frame = +3
Query: 6 LLSFGVAWRIGDGLSVRAWLDAWVTGTPLELPLIQKPYNCI-------LDRVADFIDPVN 164
L+ G+ IG+G ++ W D W+ P + K + + + V D + P
Sbjct: 917 LIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDG 976
Query: 165 RRWNTQLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHKGCYTVKSAY---------- 314
R WN LV +P + IL + T+D W G Y+VKS Y
Sbjct: 977 RDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQR 1036
Query: 315 ----RMLQGWIDPSKYHNKKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVD 482
+LQ +DP IF IWK V KI + +W+ + + L H +
Sbjct: 1037 NNPQEVLQPSLDP-------IFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLARE 1089
Query: 483 QECFLCQHEEESLHHLFIGCPFARALWFGSDLHSIIYGTNFITFKQWIEEVIYKCKEYQV 662
+ C C E+++HL CPFAR W S L + G + + + V+ K
Sbjct: 1090 KSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPE 1149
Query: 663 DQDLVKKFAIVFWCIWLARNSARFQSKDANIMHFLYKVKSMLKFAEDEDSTTAVRAEIAK 842
+ D + W +W RN F+ ++ + LK ED D+ + +
Sbjct: 1150 ESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVI------LKATEDMDAWNNRKEPQPQ 1203
Query: 843 VAIS-----ITWQFPPSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIY-GFATPFKRA 1004
V S + WQ P GW+K NTD VLRN G ++ G +
Sbjct: 1204 VTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQ 1263
Query: 1005 NAILMECYALRMGLLVAKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQLL 1184
+ + E ALR +L + +I E DS +L I + E S+ I+DI+ LL
Sbjct: 1264 SVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLVSLI--QNEMDIPSLAPRIQDIRNLL 1321
Query: 1185 KGFRHTRMVWNYREANCVADTFARHA--------STQAASADWMTN 1298
+ F + + RE N VAD AR + + + DW+ N
Sbjct: 1322 RHFEEVKFQFTRREGNNVADRTARESLSLMNYDPKMYSITPDWIKN 1367
>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
Japonica Group]
Length = 1382
Score = 139 bits (351), Expect = 1e-30
Identities = 116/469 (24%), Positives = 203/469 (43%), Gaps = 22/469 (4%)
Frame = +3
Query: 6 LLSFGVAWRIGDGLSVRAWLDAWVTGTPLELPLIQKPY------NCILDRVADFIDPVNR 167
LL+ GV W +GDG +++ + D W+ G +L P+ +C+++ A R
Sbjct: 932 LLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFPTDATVSCLMNEDA-------R 984
Query: 168 RWNTQLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHK-GCYTVKSAYRMLQG---WI 335
W+ L+R +P++ A IL IP+ H D W PH K G Y+V+SAY + + +
Sbjct: 985 CWDGDLIRSLFPVDIAKEILQIPISRHGDADFASW-PHDKLGLYSVRSAYNLARSEAFFA 1043
Query: 336 DPSK---------YHNKKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVDQE 488
D S ++K + +WK K++ +W+ A E + T L R H
Sbjct: 1044 DQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDG 1103
Query: 489 CFLCQHEEESLHHLFIGCPFARALWFG-SDLHSIIYGTN-FITFKQWIEEVIYKCKEYQV 662
C C + ++++ H+F+ CPFA +W ++ G N F T +QWI + + + +
Sbjct: 1104 CVFC-NRDDTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSH-- 1160
Query: 663 DQDLVKKFAIVFWCIWLARNSARFQSKDANIMHFLYKVKSMLKFAEDEDSTTAVRAEIAK 842
A+ FW IW ARN+ + + + + K+ S + ++ T
Sbjct: 1161 ---ANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYVDMILKHNTKTVDGQRGGN 1217
Query: 843 VAISITWQFPPSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIYGFATPFKR-ANAILM 1019
WQ PP+ +N+D ++R+ G + + L
Sbjct: 1218 TQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELA 1277
Query: 1020 ECYALRMGLLVAKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQLLKGFRH 1199
E A+R L +AK+ L+HI++ D + + I + S V +IEDIK+L F
Sbjct: 1278 EALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRDR-SGVGCVIEDIKKLASTFVL 1336
Query: 1200 TRMVWNYREANCVADTFARHASTQAASADWMTNPIPHQYYIPEVIQPLL 1346
+ R +N A + AR+A + ++ IP+ I+ +L
Sbjct: 1337 CSFMHVNRLSNLAAHSLARNAELSTCTV--------YRSVIPDYIRDIL 1377
>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
protein OsJ_32156 [Oryza sativa Japonica Group]
Length = 1339
Score = 139 bits (351), Expect = 1e-30
Identities = 116/469 (24%), Positives = 203/469 (43%), Gaps = 22/469 (4%)
Frame = +3
Query: 6 LLSFGVAWRIGDGLSVRAWLDAWVTGTPLELPLIQKPY------NCILDRVADFIDPVNR 167
LL+ GV W +GDG +++ + D W+ G +L P+ +C+++ A R
Sbjct: 889 LLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFPTDATVSCLMNEDA-------R 941
Query: 168 RWNTQLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHK-GCYTVKSAYRMLQG---WI 335
W+ L+R +P++ A IL IP+ H D W PH K G Y+V+SAY + + +
Sbjct: 942 CWDGDLIRSLFPVDIAKEILQIPISRHGDADFASW-PHDKLGLYSVRSAYNLARSEAFFA 1000
Query: 336 DPSK---------YHNKKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVDQE 488
D S ++K + +WK K++ +W+ A E + T L R H
Sbjct: 1001 DQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDG 1060
Query: 489 CFLCQHEEESLHHLFIGCPFARALWFG-SDLHSIIYGTN-FITFKQWIEEVIYKCKEYQV 662
C C + ++++ H+F+ CPFA +W ++ G N F T +QWI + + + +
Sbjct: 1061 CVFC-NRDDTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSH-- 1117
Query: 663 DQDLVKKFAIVFWCIWLARNSARFQSKDANIMHFLYKVKSMLKFAEDEDSTTAVRAEIAK 842
A+ FW IW ARN+ + + + + K+ S + ++ T
Sbjct: 1118 ---ANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYVDMILKHNTKTVDGQRGGN 1174
Query: 843 VAISITWQFPPSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIYGFATPFKR-ANAILM 1019
WQ PP+ +N+D ++R+ G + + L
Sbjct: 1175 TQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELA 1234
Query: 1020 ECYALRMGLLVAKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQLLKGFRH 1199
E A+R L +AK+ L+HI++ D + + I + S V +IEDIK+L F
Sbjct: 1235 EALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRDR-SGVGCVIEDIKKLASTFVL 1293
Query: 1200 TRMVWNYREANCVADTFARHASTQAASADWMTNPIPHQYYIPEVIQPLL 1346
+ R +N A + AR+A + ++ IP+ I+ +L
Sbjct: 1294 CSFMHVNRLSNLAAHSLARNAELSTCTV--------YRSVIPDYIRDIL 1334
>gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Zea mays]
Length = 472
Score = 139 bits (350), Expect = 2e-30
Identities = 113/438 (25%), Positives = 192/438 (43%), Gaps = 17/438 (3%)
Frame = +3
Query: 3 NLLSFGVAWRIGDGLSVRAWLDAWVTGTPLELPLIQKPYN-CILDRVADFIDPVNRRWNT 179
+LL G+ WRIGDG V W+D W+ E + P N +L +VA+ IDP+ W+
Sbjct: 23 HLLKEGLIWRIGDGNQVNIWVDPWIPRG--ETRRVITPRNGSLLHKVAELIDPITGSWDC 80
Query: 180 QLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHKGCYTVKSAYRMLQGWIDPSKYHN- 356
+LVR + E AD IL IP++ +D+ W KG ++VKSAY + D +HN
Sbjct: 81 RLVRDTFLQEDADCILAIPIQ-EGMEDTLAWHGDPKGNFSVKSAYALASRRRD---HHNN 136
Query: 357 -----------KKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVDQECFLCQ 503
+ ++ SIW V KI+ +W+ A P + R ++ C +C
Sbjct: 137 ADASSSISGRGENVWKSIWNVNVTNKIKMFLWRLAHNSHPVRVNIARRGIKIETLCPMCF 196
Query: 504 HEEESLHHLFIGCPFARALW---FGSDLHSIIYGTNFITFKQWIEEVIYKCKEYQVDQDL 674
+E HLF+ C + +W D +++ + + + IE ++ +E ++
Sbjct: 197 RLDEDGGHLFLKCKKVKQVWRCLCLEDTRTLL--ASKASALEVIESILTLREETKI---- 250
Query: 675 VKKFAIVFWCIWLARNSARFQSKDANIMHFLYKVKSMLKFAEDEDSTTAVRAEIAKVAIS 854
K ++ WC W ARN + + V L E + RA ++
Sbjct: 251 --KVVLLLWCWWSARNKTIQGERCGSTEEVCNTVAYHLMNMEKLQIGKSARAP----PMN 304
Query: 855 ITWQFPPSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIYGFATPFKR-ANAILMECYA 1031
+ WQ PP+G+ K+N D ++R GGF+ A ++A+ E A
Sbjct: 305 LKWQPPPAGFYKINCDGSYRAKSGLGSWGCIIRGHDGGFLAAGAGALTGISSALHAESVA 364
Query: 1032 LRMGLLVAKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQLLKGFRHTRMV 1211
GL +A L + +++IE D++ L A+ ++ + + + E ++ F +
Sbjct: 365 CMKGLELAVFLGMQNVMIETDAAILKTALTSQEYDLSALGVVFKEIRSRMFSEFACCIVS 424
Query: 1212 WNYREANCVADTFARHAS 1265
R N VAD A H +
Sbjct: 425 KCQRTCNLVADCLAAHGA 442
>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1362
Score = 139 bits (349), Expect = 2e-30
Identities = 109/445 (24%), Positives = 181/445 (40%), Gaps = 15/445 (3%)
Frame = +3
Query: 3 NLLSFGVAWRIGDGLSVRAWLDAWVTGTPLEL-PLIQKPYNCILDRVADFIDPVNRRWNT 179
+LL G+ W +G G +R W DAW+ G + P Q N L +V D ID WN
Sbjct: 919 SLLLEGLKWCVGSGERIRVWEDAWILGEGAHMVPTPQADSNLDL-KVCDLIDVARGAWNI 977
Query: 180 QLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHKGCYTVKSAYRM-----LQGWIDPS 344
+ V+Q + E + +L+IPL D RYW P G ++V+S Y + ++ W
Sbjct: 978 ESVQQTFVEEEWELVLSIPLSRFLPDDHRYWWPSRNGIFSVRSCYWLGRLGPVRTWQLQH 1037
Query: 345 KYHNKKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVDQECFLCQHEEESLH 524
+++ +W+ + K+ + +W+ + + L H VD C +C +ES++
Sbjct: 1038 GERETELWRRVWQLQGPPKLSHFLWRACKGSLAVKGRLFSRHISVDATCSVCGDPDESIN 1097
Query: 525 HLFIGCPFARALWFGSDLHSIIYGTNFITFKQWIEEVIYKCKEYQVDQDLVKKFAIVFWC 704
H C FARA+W S S++ +F + +E + ++ + W
Sbjct: 1098 HALFDCTFARAIWQVSGFASLMMNAPLSSFSERLEWL-----AKHATKEEFRTMCSFMWA 1152
Query: 705 IWLARNSARFQSK--DANIMHFLYKVKSMLKFAED--EDSTTAVRAEIAKVAISITWQFP 872
W RN F+++ DA ++ K K D E + + R S W P
Sbjct: 1153 GWFCRNKLIFENELSDAPLV-----AKRFSKLVADYCEYAGSVFRGSGGGCGSSALWSPP 1207
Query: 873 PSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIYGFATPFKRANAILMECYALRMGLLV 1052
P+G K+N D + N+ G + G R A++ E A + V
Sbjct: 1208 PTGMFKVNFDAHLSPNGEVGLGVVIRANDGGIKMLGVKRVAARWTAVMAEAMAALFAVEV 1267
Query: 1053 AKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQL-----LKGFRHTRMVWN 1217
A +L I++E D+ + A + K E + + + DI L + H R
Sbjct: 1268 AHRLGFGRIVLEGDAMMVINA-VKHKCEGVAPMFRIFNDISSLGACLDVFSVSHVR---- 1322
Query: 1218 YREANCVADTFARHASTQAASADWM 1292
R N VA AR + W+
Sbjct: 1323 -RAGNTVAHLLARWCCDCNSEIVWL 1346