BLASTX nr result

ID: Coptis24_contig00014875 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014875
         (1362 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...   142   2e-31
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...   139   1e-30
gb|AAP54617.2| retrotransposon protein, putative, unclassified [...   139   1e-30
gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Ze...   139   2e-30
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   139   2e-30

>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score =  142 bits (358), Expect = 2e-31
 Identities = 119/466 (25%), Positives = 184/466 (39%), Gaps = 35/466 (7%)
 Frame = +3

Query: 6    LLSFGVAWRIGDGLSVRAWLDAWVTGTPLELPLIQKPYNCI-------LDRVADFIDPVN 164
            L+  G+   IG+G ++  W D W+   P +     K  + +       +  V D + P  
Sbjct: 917  LIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDG 976

Query: 165  RRWNTQLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHKGCYTVKSAY---------- 314
            R WN  LV   +P    + IL +      T+D   W     G Y+VKS Y          
Sbjct: 977  RDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQR 1036

Query: 315  ----RMLQGWIDPSKYHNKKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVD 482
                 +LQ  +DP       IF  IWK  V  KI + +W+     +  +  L   H   +
Sbjct: 1037 NNPQEVLQPSLDP-------IFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLARE 1089

Query: 483  QECFLCQHEEESLHHLFIGCPFARALWFGSDLHSIIYGTNFITFKQWIEEVIYKCKEYQV 662
            + C  C    E+++HL   CPFAR  W  S L +   G    +  + +  V+   K    
Sbjct: 1090 KSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPE 1149

Query: 663  DQDLVKKFAIVFWCIWLARNSARFQSKDANIMHFLYKVKSMLKFAEDEDSTTAVRAEIAK 842
            + D       + W +W  RN   F+ ++      +      LK  ED D+    +    +
Sbjct: 1150 ESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVI------LKATEDMDAWNNRKEPQPQ 1203

Query: 843  VAIS-----ITWQFPPSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIY-GFATPFKRA 1004
            V  S     + WQ P  GW+K NTD              VLRN  G  ++ G      + 
Sbjct: 1204 VTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQ 1263

Query: 1005 NAILMECYALRMGLLVAKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQLL 1184
            + +  E  ALR  +L   +     +I E DS +L   I  + E    S+   I+DI+ LL
Sbjct: 1264 SVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLVSLI--QNEMDIPSLAPRIQDIRNLL 1321

Query: 1185 KGFRHTRMVWNYREANCVADTFARHA--------STQAASADWMTN 1298
            + F   +  +  RE N VAD  AR +           + + DW+ N
Sbjct: 1322 RHFEEVKFQFTRREGNNVADRTARESLSLMNYDPKMYSITPDWIKN 1367


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
            Japonica Group]
          Length = 1382

 Score =  139 bits (351), Expect = 1e-30
 Identities = 116/469 (24%), Positives = 203/469 (43%), Gaps = 22/469 (4%)
 Frame = +3

Query: 6    LLSFGVAWRIGDGLSVRAWLDAWVTGTPLELPLIQKPY------NCILDRVADFIDPVNR 167
            LL+ GV W +GDG +++ + D W+ G   +L     P+      +C+++  A       R
Sbjct: 932  LLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFPTDATVSCLMNEDA-------R 984

Query: 168  RWNTQLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHK-GCYTVKSAYRMLQG---WI 335
             W+  L+R  +P++ A  IL IP+  H   D   W PH K G Y+V+SAY + +    + 
Sbjct: 985  CWDGDLIRSLFPVDIAKEILQIPISRHGDADFASW-PHDKLGLYSVRSAYNLARSEAFFA 1043

Query: 336  DPSK---------YHNKKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVDQE 488
            D S            ++K +  +WK     K++  +W+ A E + T   L R H      
Sbjct: 1044 DQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDG 1103

Query: 489  CFLCQHEEESLHHLFIGCPFARALWFG-SDLHSIIYGTN-FITFKQWIEEVIYKCKEYQV 662
            C  C + ++++ H+F+ CPFA  +W       ++  G N F T +QWI + + +   +  
Sbjct: 1104 CVFC-NRDDTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSH-- 1160

Query: 663  DQDLVKKFAIVFWCIWLARNSARFQSKDANIMHFLYKVKSMLKFAEDEDSTTAVRAEIAK 842
                    A+ FW IW ARN+ +  +   +    + K+ S +      ++ T        
Sbjct: 1161 ---ANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYVDMILKHNTKTVDGQRGGN 1217

Query: 843  VAISITWQFPPSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIYGFATPFKR-ANAILM 1019
                  WQ PP+    +N+D              ++R+  G  +   +          L 
Sbjct: 1218 TQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELA 1277

Query: 1020 ECYALRMGLLVAKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQLLKGFRH 1199
            E  A+R  L +AK+  L+HI++  D   + + I     +  S V  +IEDIK+L   F  
Sbjct: 1278 EALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRDR-SGVGCVIEDIKKLASTFVL 1336

Query: 1200 TRMVWNYREANCVADTFARHASTQAASADWMTNPIPHQYYIPEVIQPLL 1346
               +   R +N  A + AR+A     +         ++  IP+ I+ +L
Sbjct: 1337 CSFMHVNRLSNLAAHSLARNAELSTCTV--------YRSVIPDYIRDIL 1377


>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
            protein OsJ_32156 [Oryza sativa Japonica Group]
          Length = 1339

 Score =  139 bits (351), Expect = 1e-30
 Identities = 116/469 (24%), Positives = 203/469 (43%), Gaps = 22/469 (4%)
 Frame = +3

Query: 6    LLSFGVAWRIGDGLSVRAWLDAWVTGTPLELPLIQKPY------NCILDRVADFIDPVNR 167
            LL+ GV W +GDG +++ + D W+ G   +L     P+      +C+++  A       R
Sbjct: 889  LLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFPTDATVSCLMNEDA-------R 941

Query: 168  RWNTQLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHK-GCYTVKSAYRMLQG---WI 335
             W+  L+R  +P++ A  IL IP+  H   D   W PH K G Y+V+SAY + +    + 
Sbjct: 942  CWDGDLIRSLFPVDIAKEILQIPISRHGDADFASW-PHDKLGLYSVRSAYNLARSEAFFA 1000

Query: 336  DPSK---------YHNKKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVDQE 488
            D S            ++K +  +WK     K++  +W+ A E + T   L R H      
Sbjct: 1001 DQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDG 1060

Query: 489  CFLCQHEEESLHHLFIGCPFARALWFG-SDLHSIIYGTN-FITFKQWIEEVIYKCKEYQV 662
            C  C + ++++ H+F+ CPFA  +W       ++  G N F T +QWI + + +   +  
Sbjct: 1061 CVFC-NRDDTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSH-- 1117

Query: 663  DQDLVKKFAIVFWCIWLARNSARFQSKDANIMHFLYKVKSMLKFAEDEDSTTAVRAEIAK 842
                    A+ FW IW ARN+ +  +   +    + K+ S +      ++ T        
Sbjct: 1118 ---ANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYVDMILKHNTKTVDGQRGGN 1174

Query: 843  VAISITWQFPPSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIYGFATPFKR-ANAILM 1019
                  WQ PP+    +N+D              ++R+  G  +   +          L 
Sbjct: 1175 TQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELA 1234

Query: 1020 ECYALRMGLLVAKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQLLKGFRH 1199
            E  A+R  L +AK+  L+HI++  D   + + I     +  S V  +IEDIK+L   F  
Sbjct: 1235 EALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRDR-SGVGCVIEDIKKLASTFVL 1293

Query: 1200 TRMVWNYREANCVADTFARHASTQAASADWMTNPIPHQYYIPEVIQPLL 1346
               +   R +N  A + AR+A     +         ++  IP+ I+ +L
Sbjct: 1294 CSFMHVNRLSNLAAHSLARNAELSTCTV--------YRSVIPDYIRDIL 1334


>gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Zea mays]
          Length = 472

 Score =  139 bits (350), Expect = 2e-30
 Identities = 113/438 (25%), Positives = 192/438 (43%), Gaps = 17/438 (3%)
 Frame = +3

Query: 3    NLLSFGVAWRIGDGLSVRAWLDAWVTGTPLELPLIQKPYN-CILDRVADFIDPVNRRWNT 179
            +LL  G+ WRIGDG  V  W+D W+     E   +  P N  +L +VA+ IDP+   W+ 
Sbjct: 23   HLLKEGLIWRIGDGNQVNIWVDPWIPRG--ETRRVITPRNGSLLHKVAELIDPITGSWDC 80

Query: 180  QLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHKGCYTVKSAYRMLQGWIDPSKYHN- 356
            +LVR  +  E AD IL IP++    +D+  W    KG ++VKSAY +     D   +HN 
Sbjct: 81   RLVRDTFLQEDADCILAIPIQ-EGMEDTLAWHGDPKGNFSVKSAYALASRRRD---HHNN 136

Query: 357  -----------KKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVDQECFLCQ 503
                       + ++ SIW   V  KI+  +W+ A    P    + R    ++  C +C 
Sbjct: 137  ADASSSISGRGENVWKSIWNVNVTNKIKMFLWRLAHNSHPVRVNIARRGIKIETLCPMCF 196

Query: 504  HEEESLHHLFIGCPFARALW---FGSDLHSIIYGTNFITFKQWIEEVIYKCKEYQVDQDL 674
              +E   HLF+ C   + +W      D  +++   +  +  + IE ++   +E ++    
Sbjct: 197  RLDEDGGHLFLKCKKVKQVWRCLCLEDTRTLL--ASKASALEVIESILTLREETKI---- 250

Query: 675  VKKFAIVFWCIWLARNSARFQSKDANIMHFLYKVKSMLKFAEDEDSTTAVRAEIAKVAIS 854
              K  ++ WC W ARN      +  +       V   L   E      + RA      ++
Sbjct: 251  --KVVLLLWCWWSARNKTIQGERCGSTEEVCNTVAYHLMNMEKLQIGKSARAP----PMN 304

Query: 855  ITWQFPPSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIYGFATPFKR-ANAILMECYA 1031
            + WQ PP+G+ K+N D              ++R   GGF+   A      ++A+  E  A
Sbjct: 305  LKWQPPPAGFYKINCDGSYRAKSGLGSWGCIIRGHDGGFLAAGAGALTGISSALHAESVA 364

Query: 1032 LRMGLLVAKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQLLKGFRHTRMV 1211
               GL +A  L + +++IE D++ L  A+  ++ +  +  +   E   ++   F    + 
Sbjct: 365  CMKGLELAVFLGMQNVMIETDAAILKTALTSQEYDLSALGVVFKEIRSRMFSEFACCIVS 424

Query: 1212 WNYREANCVADTFARHAS 1265
               R  N VAD  A H +
Sbjct: 425  KCQRTCNLVADCLAAHGA 442


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  139 bits (349), Expect = 2e-30
 Identities = 109/445 (24%), Positives = 181/445 (40%), Gaps = 15/445 (3%)
 Frame = +3

Query: 3    NLLSFGVAWRIGDGLSVRAWLDAWVTGTPLEL-PLIQKPYNCILDRVADFIDPVNRRWNT 179
            +LL  G+ W +G G  +R W DAW+ G    + P  Q   N  L +V D ID     WN 
Sbjct: 919  SLLLEGLKWCVGSGERIRVWEDAWILGEGAHMVPTPQADSNLDL-KVCDLIDVARGAWNI 977

Query: 180  QLVRQYWPMEYADRILTIPLKIHATQDSRYWAPHHKGCYTVKSAYRM-----LQGWIDPS 344
            + V+Q +  E  + +L+IPL      D RYW P   G ++V+S Y +     ++ W    
Sbjct: 978  ESVQQTFVEEEWELVLSIPLSRFLPDDHRYWWPSRNGIFSVRSCYWLGRLGPVRTWQLQH 1037

Query: 345  KYHNKKIFASIWKCKVAYKIRYCMWQGAQEVIPTSDFLLRHHFHVDQECFLCQHEEESLH 524
                 +++  +W+ +   K+ + +W+  +  +     L   H  VD  C +C   +ES++
Sbjct: 1038 GERETELWRRVWQLQGPPKLSHFLWRACKGSLAVKGRLFSRHISVDATCSVCGDPDESIN 1097

Query: 525  HLFIGCPFARALWFGSDLHSIIYGTNFITFKQWIEEVIYKCKEYQVDQDLVKKFAIVFWC 704
            H    C FARA+W  S   S++      +F + +E +          ++  +      W 
Sbjct: 1098 HALFDCTFARAIWQVSGFASLMMNAPLSSFSERLEWL-----AKHATKEEFRTMCSFMWA 1152

Query: 705  IWLARNSARFQSK--DANIMHFLYKVKSMLKFAED--EDSTTAVRAEIAKVAISITWQFP 872
             W  RN   F+++  DA ++      K   K   D  E + +  R        S  W  P
Sbjct: 1153 GWFCRNKLIFENELSDAPLV-----AKRFSKLVADYCEYAGSVFRGSGGGCGSSALWSPP 1207

Query: 873  PSGWLKLNTDXXXXXXXXXXXXXXVLRNEYGGFIYGFATPFKRANAILMECYALRMGLLV 1052
            P+G  K+N D              +  N+ G  + G      R  A++ E  A    + V
Sbjct: 1208 PTGMFKVNFDAHLSPNGEVGLGVVIRANDGGIKMLGVKRVAARWTAVMAEAMAALFAVEV 1267

Query: 1053 AKKLELDHIIIEVDSSFLHKAIIGEKEESPSSVIALIEDIKQL-----LKGFRHTRMVWN 1217
            A +L    I++E D+  +  A +  K E  + +  +  DI  L     +    H R    
Sbjct: 1268 AHRLGFGRIVLEGDAMMVINA-VKHKCEGVAPMFRIFNDISSLGACLDVFSVSHVR---- 1322

Query: 1218 YREANCVADTFARHASTQAASADWM 1292
             R  N VA   AR      +   W+
Sbjct: 1323 -RAGNTVAHLLARWCCDCNSEIVWL 1346


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