BLASTX nr result
ID: Coptis24_contig00014864
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00014864
(674 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsu... 294 9e-78
ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containi... 281 6e-74
ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containi... 281 6e-74
ref|NP_180932.1| pentatricopeptide repeat-containing protein [Ar... 277 2e-72
ref|XP_002305798.1| predicted protein [Populus trichocarpa] gi|2... 275 5e-72
>gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat
protein [Gossypium hirsutum]
Length = 592
Score = 294 bits (753), Expect = 9e-78
Identities = 136/224 (60%), Positives = 175/224 (78%)
Frame = -1
Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
V+ G G D Y+QAAL++FYAKSG + +AR VFD+M E+++VAWN+M+SGYEQNGFG EA
Sbjct: 144 VYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEA 203
Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315
VE+F+LM+ LGV+PDS+T V G W H+Y+ D+NV+LGT+L+NM
Sbjct: 204 VELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNM 263
Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135
Y+RCGNV KAREVF+ M +N++ WT+MISGYGMHG+G +AIELF++M GPRPN+VTF
Sbjct: 264 YSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTF 323
Query: 134 IAALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3
+A LSACAH GLV++GR++ T MKQ YGLVP VEH VCMVDMLG
Sbjct: 324 VAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLG 367
Score = 97.8 bits (242), Expect = 2e-18
Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 1/197 (0%)
Frame = -1
Query: 674 VFSSGLGEDFYIQAALITF-YAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNE 498
+ +GLG + L++F YA + + R +F + + ++++++ + F E
Sbjct: 42 IIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQE 101
Query: 497 AVEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVN 318
++ + M + + T G H +V G ++ + +LV+
Sbjct: 102 SLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVS 161
Query: 317 MYARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVT 138
YA+ G+V AR+VF+ MP + V+ W SMISGY +G+GKEA+ELF M+ G +P+ T
Sbjct: 162 FYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSST 221
Query: 137 FIAALSACAHVGLVEKG 87
F++ LSACA VG + G
Sbjct: 222 FVSLLSACAQVGAIGLG 238
>ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 281 bits (720), Expect = 6e-74
Identities = 131/224 (58%), Positives = 165/224 (73%)
Frame = -1
Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
V G G D Y+QAALI YAK+ D+ VA+ VFD M +R+I+AWN+++SGY+QNG E+
Sbjct: 215 VMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQES 274
Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315
+ +F+LM G +PDSATIV G W HDY G D+NV+LGTSL+NM
Sbjct: 275 IGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINM 334
Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135
Y RCGNV KAREVF+ M RNV+TWT+MISGYGMHGYG++A+ELF +MR GPRPN++TF
Sbjct: 335 YTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITF 394
Query: 134 IAALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3
+A LSACAH GL++ GR V + MK+ YGLVP VEH+VCMVDM G
Sbjct: 395 VAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFG 438
Score = 87.4 bits (215), Expect = 2e-15
Identities = 50/196 (25%), Positives = 95/196 (48%)
Frame = -1
Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
+ SGL + LI+ +G + AR +F + ++++L + GF +
Sbjct: 114 IIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDT 173
Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315
V + M G + T G+ H +V+ G ++ + +L+ +
Sbjct: 174 VLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIAL 233
Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135
YA+ ++ A++VF+ MP R ++ W S+ISGY +G +E+I LFH M G +P+ T
Sbjct: 234 YAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATI 293
Query: 134 IAALSACAHVGLVEKG 87
++ LS+C+ +G ++ G
Sbjct: 294 VSLLSSCSQLGALDFG 309
>ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 281 bits (720), Expect = 6e-74
Identities = 131/224 (58%), Positives = 165/224 (73%)
Frame = -1
Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
V G G D Y+QAALI YAK+ D+ VA+ VFD M +R+I+AWN+++SGY+QNG E+
Sbjct: 151 VMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQES 210
Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315
+ +F+LM G +PDSATIV G W HDY G D+NV+LGTSL+NM
Sbjct: 211 IGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINM 270
Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135
Y RCGNV KAREVF+ M RNV+TWT+MISGYGMHGYG++A+ELF +MR GPRPN++TF
Sbjct: 271 YTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITF 330
Query: 134 IAALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3
+A LSACAH GL++ GR V + MK+ YGLVP VEH+VCMVDM G
Sbjct: 331 VAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFG 374
Score = 87.4 bits (215), Expect = 2e-15
Identities = 50/196 (25%), Positives = 95/196 (48%)
Frame = -1
Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
+ SGL + LI+ +G + AR +F + ++++L + GF +
Sbjct: 50 IIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDT 109
Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315
V + M G + T G+ H +V+ G ++ + +L+ +
Sbjct: 110 VLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIAL 169
Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135
YA+ ++ A++VF+ MP R ++ W S+ISGY +G +E+I LFH M G +P+ T
Sbjct: 170 YAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATI 229
Query: 134 IAALSACAHVGLVEKG 87
++ LS+C+ +G ++ G
Sbjct: 230 VSLLSSCSQLGALDFG 245
>ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g33760 gi|1707020|gb|AAC69141.1| hypothetical protein
[Arabidopsis thaliana] gi|330253787|gb|AEC08881.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 583
Score = 277 bits (708), Expect = 2e-72
Identities = 131/222 (59%), Positives = 165/222 (74%), Gaps = 1/222 (0%)
Frame = -1
Query: 665 SGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEI 486
SG G D Y+QAAL+TFY+K GD+ AR VFD+M E+SIVAWN+++SG+EQNG +EA+++
Sbjct: 136 SGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQV 195
Query: 485 FYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNMYAR 306
FY MR G EPDSAT V G W H Y++ GLD+NV LGT+L+N+Y+R
Sbjct: 196 FYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSR 255
Query: 305 CGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMR-TCGPRPNDVTFIA 129
CG+VGKAREVF+ M NV WT+MIS YG HGYG++A+ELF++M CGP PN+VTF+A
Sbjct: 256 CGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVA 315
Query: 128 ALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3
LSACAH GLVE+GR V M + Y L+P VEHHVCMVDMLG
Sbjct: 316 VLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLG 357
Score = 92.4 bits (228), Expect = 7e-17
Identities = 51/193 (26%), Positives = 91/193 (47%)
Frame = -1
Query: 665 SGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEI 486
+G G + LIT + + ++F + +N+++ + V
Sbjct: 35 TGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAY 94
Query: 485 FYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNMYAR 306
+ M V P + T G+ H + V G ++ + +LV Y++
Sbjct: 95 YRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSK 154
Query: 305 CGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTFIAA 126
CG++ AR+VF+ MP ++++ W S++SG+ +G EAI++F+QMR G P+ TF++
Sbjct: 155 CGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSL 214
Query: 125 LSACAHVGLVEKG 87
LSACA G V G
Sbjct: 215 LSACAQTGAVSLG 227
Score = 74.3 bits (181), Expect = 2e-11
Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 7/226 (3%)
Frame = -1
Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
+ S GL + + ALI Y++ GD+G AR VFD+M E ++ AW AM+S Y +G+G +A
Sbjct: 234 IISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQA 293
Query: 494 VEIFYLMR-RLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVN 318
VE+F M G P++ T V ++++
Sbjct: 294 VELFNKMEDDCGPIPNNVTFV-----------------------------------AVLS 318
Query: 317 MYARCGNVGKAREVFNGMP-----VRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPR 153
A G V + R V+ M + V M+ G G+ EA + HQ+ G
Sbjct: 319 ACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKA 378
Query: 152 PNDVTFIAALSACAHVGLVEKGREVLTCMKQMYGLVP-RVEHHVCM 18
+ A L AC + G E+ K++ L P HHV +
Sbjct: 379 TAPALWTAMLGACKMHRNYDLGVEI---AKRLIALEPDNPGHHVML 421
>ref|XP_002305798.1| predicted protein [Populus trichocarpa] gi|222848762|gb|EEE86309.1|
predicted protein [Populus trichocarpa]
Length = 584
Score = 275 bits (704), Expect = 5e-72
Identities = 130/224 (58%), Positives = 161/224 (71%)
Frame = -1
Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
V +G G D Y+Q AL++FY K G L AR VFD+M +RS+V WN+M+SGYEQNGF EA
Sbjct: 137 VLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEA 196
Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315
+ +F M+ +GVEP+SAT V G W H+Y V GLD+NV+LGTSL+NM
Sbjct: 197 IRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINM 256
Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135
Y RCGNV KAREVF+ M RNV+ WT+MISGYG +GYG +A+ELFH+MR G PN +TF
Sbjct: 257 YTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITF 316
Query: 134 IAALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3
+A LSACAH GLV +GR V M++ Y LVP VEHHVC+VDMLG
Sbjct: 317 VAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLG 360
Score = 104 bits (259), Expect = 2e-20
Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 3/194 (1%)
Frame = -1
Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
V SG G ++ L+ +G + R +F + + +++ + F N +
Sbjct: 35 VIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSK--FHNFS 92
Query: 494 VEIFYLMRRL---GVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSL 324
V Y R+ V P + T GR H +V+ G +V + T+L
Sbjct: 93 VYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTAL 152
Query: 323 VNMYARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPND 144
++ Y +CG + AR+VF+ M R+V+TW SMISGY +G+ KEAI LF +M+ G PN
Sbjct: 153 MSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNS 212
Query: 143 VTFIAALSACAHVG 102
TF++ LSACAH+G
Sbjct: 213 ATFVSVLSACAHLG 226