BLASTX nr result
ID: Coptis24_contig00014864
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00014864 (674 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsu... 294 9e-78 ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containi... 281 6e-74 ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containi... 281 6e-74 ref|NP_180932.1| pentatricopeptide repeat-containing protein [Ar... 277 2e-72 ref|XP_002305798.1| predicted protein [Populus trichocarpa] gi|2... 275 5e-72 >gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum] gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum] Length = 592 Score = 294 bits (753), Expect = 9e-78 Identities = 136/224 (60%), Positives = 175/224 (78%) Frame = -1 Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495 V+ G G D Y+QAAL++FYAKSG + +AR VFD+M E+++VAWN+M+SGYEQNGFG EA Sbjct: 144 VYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEA 203 Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315 VE+F+LM+ LGV+PDS+T V G W H+Y+ D+NV+LGT+L+NM Sbjct: 204 VELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNM 263 Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135 Y+RCGNV KAREVF+ M +N++ WT+MISGYGMHG+G +AIELF++M GPRPN+VTF Sbjct: 264 YSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTF 323 Query: 134 IAALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3 +A LSACAH GLV++GR++ T MKQ YGLVP VEH VCMVDMLG Sbjct: 324 VAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLG 367 Score = 97.8 bits (242), Expect = 2e-18 Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 1/197 (0%) Frame = -1 Query: 674 VFSSGLGEDFYIQAALITF-YAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNE 498 + +GLG + L++F YA + + R +F + + ++++++ + F E Sbjct: 42 IIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQE 101 Query: 497 AVEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVN 318 ++ + M + + T G H +V G ++ + +LV+ Sbjct: 102 SLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVS 161 Query: 317 MYARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVT 138 YA+ G+V AR+VF+ MP + V+ W SMISGY +G+GKEA+ELF M+ G +P+ T Sbjct: 162 FYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSST 221 Query: 137 FIAALSACAHVGLVEKG 87 F++ LSACA VG + G Sbjct: 222 FVSLLSACAQVGAIGLG 238 >ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Cucumis sativus] Length = 663 Score = 281 bits (720), Expect = 6e-74 Identities = 131/224 (58%), Positives = 165/224 (73%) Frame = -1 Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495 V G G D Y+QAALI YAK+ D+ VA+ VFD M +R+I+AWN+++SGY+QNG E+ Sbjct: 215 VMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQES 274 Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315 + +F+LM G +PDSATIV G W HDY G D+NV+LGTSL+NM Sbjct: 275 IGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINM 334 Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135 Y RCGNV KAREVF+ M RNV+TWT+MISGYGMHGYG++A+ELF +MR GPRPN++TF Sbjct: 335 YTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITF 394 Query: 134 IAALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3 +A LSACAH GL++ GR V + MK+ YGLVP VEH+VCMVDM G Sbjct: 395 VAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFG 438 Score = 87.4 bits (215), Expect = 2e-15 Identities = 50/196 (25%), Positives = 95/196 (48%) Frame = -1 Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495 + SGL + LI+ +G + AR +F + ++++L + GF + Sbjct: 114 IIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDT 173 Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315 V + M G + T G+ H +V+ G ++ + +L+ + Sbjct: 174 VLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIAL 233 Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135 YA+ ++ A++VF+ MP R ++ W S+ISGY +G +E+I LFH M G +P+ T Sbjct: 234 YAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATI 293 Query: 134 IAALSACAHVGLVEKG 87 ++ LS+C+ +G ++ G Sbjct: 294 VSLLSSCSQLGALDFG 309 >ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Cucumis sativus] Length = 599 Score = 281 bits (720), Expect = 6e-74 Identities = 131/224 (58%), Positives = 165/224 (73%) Frame = -1 Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495 V G G D Y+QAALI YAK+ D+ VA+ VFD M +R+I+AWN+++SGY+QNG E+ Sbjct: 151 VMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQES 210 Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315 + +F+LM G +PDSATIV G W HDY G D+NV+LGTSL+NM Sbjct: 211 IGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINM 270 Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135 Y RCGNV KAREVF+ M RNV+TWT+MISGYGMHGYG++A+ELF +MR GPRPN++TF Sbjct: 271 YTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITF 330 Query: 134 IAALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3 +A LSACAH GL++ GR V + MK+ YGLVP VEH+VCMVDM G Sbjct: 331 VAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFG 374 Score = 87.4 bits (215), Expect = 2e-15 Identities = 50/196 (25%), Positives = 95/196 (48%) Frame = -1 Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495 + SGL + LI+ +G + AR +F + ++++L + GF + Sbjct: 50 IIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDT 109 Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315 V + M G + T G+ H +V+ G ++ + +L+ + Sbjct: 110 VLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIAL 169 Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135 YA+ ++ A++VF+ MP R ++ W S+ISGY +G +E+I LFH M G +P+ T Sbjct: 170 YAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATI 229 Query: 134 IAALSACAHVGLVEKG 87 ++ LS+C+ +G ++ G Sbjct: 230 VSLLSSCSQLGALDFG 245 >ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana] gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 583 Score = 277 bits (708), Expect = 2e-72 Identities = 131/222 (59%), Positives = 165/222 (74%), Gaps = 1/222 (0%) Frame = -1 Query: 665 SGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEI 486 SG G D Y+QAAL+TFY+K GD+ AR VFD+M E+SIVAWN+++SG+EQNG +EA+++ Sbjct: 136 SGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQV 195 Query: 485 FYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNMYAR 306 FY MR G EPDSAT V G W H Y++ GLD+NV LGT+L+N+Y+R Sbjct: 196 FYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSR 255 Query: 305 CGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMR-TCGPRPNDVTFIA 129 CG+VGKAREVF+ M NV WT+MIS YG HGYG++A+ELF++M CGP PN+VTF+A Sbjct: 256 CGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVA 315 Query: 128 ALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3 LSACAH GLVE+GR V M + Y L+P VEHHVCMVDMLG Sbjct: 316 VLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLG 357 Score = 92.4 bits (228), Expect = 7e-17 Identities = 51/193 (26%), Positives = 91/193 (47%) Frame = -1 Query: 665 SGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEI 486 +G G + LIT + + ++F + +N+++ + V Sbjct: 35 TGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAY 94 Query: 485 FYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNMYAR 306 + M V P + T G+ H + V G ++ + +LV Y++ Sbjct: 95 YRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSK 154 Query: 305 CGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTFIAA 126 CG++ AR+VF+ MP ++++ W S++SG+ +G EAI++F+QMR G P+ TF++ Sbjct: 155 CGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSL 214 Query: 125 LSACAHVGLVEKG 87 LSACA G V G Sbjct: 215 LSACAQTGAVSLG 227 Score = 74.3 bits (181), Expect = 2e-11 Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 7/226 (3%) Frame = -1 Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495 + S GL + + ALI Y++ GD+G AR VFD+M E ++ AW AM+S Y +G+G +A Sbjct: 234 IISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQA 293 Query: 494 VEIFYLMR-RLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVN 318 VE+F M G P++ T V ++++ Sbjct: 294 VELFNKMEDDCGPIPNNVTFV-----------------------------------AVLS 318 Query: 317 MYARCGNVGKAREVFNGMP-----VRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPR 153 A G V + R V+ M + V M+ G G+ EA + HQ+ G Sbjct: 319 ACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKA 378 Query: 152 PNDVTFIAALSACAHVGLVEKGREVLTCMKQMYGLVP-RVEHHVCM 18 + A L AC + G E+ K++ L P HHV + Sbjct: 379 TAPALWTAMLGACKMHRNYDLGVEI---AKRLIALEPDNPGHHVML 421 >ref|XP_002305798.1| predicted protein [Populus trichocarpa] gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa] Length = 584 Score = 275 bits (704), Expect = 5e-72 Identities = 130/224 (58%), Positives = 161/224 (71%) Frame = -1 Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495 V +G G D Y+Q AL++FY K G L AR VFD+M +RS+V WN+M+SGYEQNGF EA Sbjct: 137 VLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEA 196 Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315 + +F M+ +GVEP+SAT V G W H+Y V GLD+NV+LGTSL+NM Sbjct: 197 IRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINM 256 Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135 Y RCGNV KAREVF+ M RNV+ WT+MISGYG +GYG +A+ELFH+MR G PN +TF Sbjct: 257 YTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITF 316 Query: 134 IAALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3 +A LSACAH GLV +GR V M++ Y LVP VEHHVC+VDMLG Sbjct: 317 VAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLG 360 Score = 104 bits (259), Expect = 2e-20 Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 3/194 (1%) Frame = -1 Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495 V SG G ++ L+ +G + R +F + + +++ + F N + Sbjct: 35 VIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSK--FHNFS 92 Query: 494 VEIFYLMRRL---GVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSL 324 V Y R+ V P + T GR H +V+ G +V + T+L Sbjct: 93 VYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTAL 152 Query: 323 VNMYARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPND 144 ++ Y +CG + AR+VF+ M R+V+TW SMISGY +G+ KEAI LF +M+ G PN Sbjct: 153 MSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNS 212 Query: 143 VTFIAALSACAHVG 102 TF++ LSACAH+G Sbjct: 213 ATFVSVLSACAHLG 226