BLASTX nr result

ID: Coptis24_contig00014864 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014864
         (674 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsu...   294   9e-78
ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containi...   281   6e-74
ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containi...   281   6e-74
ref|NP_180932.1| pentatricopeptide repeat-containing protein [Ar...   277   2e-72
ref|XP_002305798.1| predicted protein [Populus trichocarpa] gi|2...   275   5e-72

>gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
           gi|227463002|gb|ACP39953.1| pentatricopeptide repeat
           protein [Gossypium hirsutum]
          Length = 592

 Score =  294 bits (753), Expect = 9e-78
 Identities = 136/224 (60%), Positives = 175/224 (78%)
 Frame = -1

Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
           V+  G G D Y+QAAL++FYAKSG + +AR VFD+M E+++VAWN+M+SGYEQNGFG EA
Sbjct: 144 VYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEA 203

Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315
           VE+F+LM+ LGV+PDS+T V              G W H+Y+     D+NV+LGT+L+NM
Sbjct: 204 VELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNM 263

Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135
           Y+RCGNV KAREVF+ M  +N++ WT+MISGYGMHG+G +AIELF++M   GPRPN+VTF
Sbjct: 264 YSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTF 323

Query: 134 IAALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3
           +A LSACAH GLV++GR++ T MKQ YGLVP VEH VCMVDMLG
Sbjct: 324 VAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLG 367



 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 1/197 (0%)
 Frame = -1

Query: 674 VFSSGLGEDFYIQAALITF-YAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNE 498
           +  +GLG    +   L++F YA +  +   R +F  + +     ++++++   +  F  E
Sbjct: 42  IIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQE 101

Query: 497 AVEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVN 318
           ++  +  M    +   + T                G   H +V   G  ++  +  +LV+
Sbjct: 102 SLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVS 161

Query: 317 MYARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVT 138
            YA+ G+V  AR+VF+ MP + V+ W SMISGY  +G+GKEA+ELF  M+  G +P+  T
Sbjct: 162 FYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSST 221

Query: 137 FIAALSACAHVGLVEKG 87
           F++ LSACA VG +  G
Sbjct: 222 FVSLLSACAQVGAIGLG 238


>ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  281 bits (720), Expect = 6e-74
 Identities = 131/224 (58%), Positives = 165/224 (73%)
 Frame = -1

Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
           V   G G D Y+QAALI  YAK+ D+ VA+ VFD M +R+I+AWN+++SGY+QNG   E+
Sbjct: 215 VMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQES 274

Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315
           + +F+LM   G +PDSATIV              G W HDY    G D+NV+LGTSL+NM
Sbjct: 275 IGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINM 334

Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135
           Y RCGNV KAREVF+ M  RNV+TWT+MISGYGMHGYG++A+ELF +MR  GPRPN++TF
Sbjct: 335 YTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITF 394

Query: 134 IAALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3
           +A LSACAH GL++ GR V + MK+ YGLVP VEH+VCMVDM G
Sbjct: 395 VAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFG 438



 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 50/196 (25%), Positives = 95/196 (48%)
 Frame = -1

Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
           +  SGL     +   LI+    +G +  AR +F  +       ++++L    + GF  + 
Sbjct: 114 IIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDT 173

Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315
           V  +  M   G    + T                G+  H +V+  G   ++ +  +L+ +
Sbjct: 174 VLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIAL 233

Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135
           YA+  ++  A++VF+ MP R ++ W S+ISGY  +G  +E+I LFH M   G +P+  T 
Sbjct: 234 YAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATI 293

Query: 134 IAALSACAHVGLVEKG 87
           ++ LS+C+ +G ++ G
Sbjct: 294 VSLLSSCSQLGALDFG 309


>ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  281 bits (720), Expect = 6e-74
 Identities = 131/224 (58%), Positives = 165/224 (73%)
 Frame = -1

Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
           V   G G D Y+QAALI  YAK+ D+ VA+ VFD M +R+I+AWN+++SGY+QNG   E+
Sbjct: 151 VMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQES 210

Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315
           + +F+LM   G +PDSATIV              G W HDY    G D+NV+LGTSL+NM
Sbjct: 211 IGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINM 270

Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135
           Y RCGNV KAREVF+ M  RNV+TWT+MISGYGMHGYG++A+ELF +MR  GPRPN++TF
Sbjct: 271 YTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITF 330

Query: 134 IAALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3
           +A LSACAH GL++ GR V + MK+ YGLVP VEH+VCMVDM G
Sbjct: 331 VAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFG 374



 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 50/196 (25%), Positives = 95/196 (48%)
 Frame = -1

Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
           +  SGL     +   LI+    +G +  AR +F  +       ++++L    + GF  + 
Sbjct: 50  IIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDT 109

Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315
           V  +  M   G    + T                G+  H +V+  G   ++ +  +L+ +
Sbjct: 110 VLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIAL 169

Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135
           YA+  ++  A++VF+ MP R ++ W S+ISGY  +G  +E+I LFH M   G +P+  T 
Sbjct: 170 YAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATI 229

Query: 134 IAALSACAHVGLVEKG 87
           ++ LS+C+ +G ++ G
Sbjct: 230 VSLLSSCSQLGALDFG 245


>ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75101013|sp|P93011.1|PP182_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g33760 gi|1707020|gb|AAC69141.1| hypothetical protein
           [Arabidopsis thaliana] gi|330253787|gb|AEC08881.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 583

 Score =  277 bits (708), Expect = 2e-72
 Identities = 131/222 (59%), Positives = 165/222 (74%), Gaps = 1/222 (0%)
 Frame = -1

Query: 665 SGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEI 486
           SG G D Y+QAAL+TFY+K GD+  AR VFD+M E+SIVAWN+++SG+EQNG  +EA+++
Sbjct: 136 SGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQV 195

Query: 485 FYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNMYAR 306
           FY MR  G EPDSAT V              G W H Y++  GLD+NV LGT+L+N+Y+R
Sbjct: 196 FYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSR 255

Query: 305 CGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMR-TCGPRPNDVTFIA 129
           CG+VGKAREVF+ M   NV  WT+MIS YG HGYG++A+ELF++M   CGP PN+VTF+A
Sbjct: 256 CGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVA 315

Query: 128 ALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3
            LSACAH GLVE+GR V   M + Y L+P VEHHVCMVDMLG
Sbjct: 316 VLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLG 357



 Score = 92.4 bits (228), Expect = 7e-17
 Identities = 51/193 (26%), Positives = 91/193 (47%)
 Frame = -1

Query: 665 SGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEAVEI 486
           +G G    +   LIT    +  +    ++F  +       +N+++    +       V  
Sbjct: 35  TGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAY 94

Query: 485 FYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNMYAR 306
           +  M    V P + T                G+  H + V  G  ++  +  +LV  Y++
Sbjct: 95  YRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSK 154

Query: 305 CGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTFIAA 126
           CG++  AR+VF+ MP ++++ W S++SG+  +G   EAI++F+QMR  G  P+  TF++ 
Sbjct: 155 CGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSL 214

Query: 125 LSACAHVGLVEKG 87
           LSACA  G V  G
Sbjct: 215 LSACAQTGAVSLG 227



 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 7/226 (3%)
 Frame = -1

Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
           + S GL  +  +  ALI  Y++ GD+G AR VFD+M E ++ AW AM+S Y  +G+G +A
Sbjct: 234 IISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQA 293

Query: 494 VEIFYLMR-RLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVN 318
           VE+F  M    G  P++ T V                                   ++++
Sbjct: 294 VELFNKMEDDCGPIPNNVTFV-----------------------------------AVLS 318

Query: 317 MYARCGNVGKAREVFNGMP-----VRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPR 153
             A  G V + R V+  M      +  V     M+   G  G+  EA +  HQ+   G  
Sbjct: 319 ACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKA 378

Query: 152 PNDVTFIAALSACAHVGLVEKGREVLTCMKQMYGLVP-RVEHHVCM 18
                + A L AC      + G E+    K++  L P    HHV +
Sbjct: 379 TAPALWTAMLGACKMHRNYDLGVEI---AKRLIALEPDNPGHHVML 421


>ref|XP_002305798.1| predicted protein [Populus trichocarpa] gi|222848762|gb|EEE86309.1|
           predicted protein [Populus trichocarpa]
          Length = 584

 Score =  275 bits (704), Expect = 5e-72
 Identities = 130/224 (58%), Positives = 161/224 (71%)
 Frame = -1

Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
           V  +G G D Y+Q AL++FY K G L  AR VFD+M +RS+V WN+M+SGYEQNGF  EA
Sbjct: 137 VLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEA 196

Query: 494 VEIFYLMRRLGVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSLVNM 315
           + +F  M+ +GVEP+SAT V              G W H+Y V  GLD+NV+LGTSL+NM
Sbjct: 197 IRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINM 256

Query: 314 YARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPNDVTF 135
           Y RCGNV KAREVF+ M  RNV+ WT+MISGYG +GYG +A+ELFH+MR  G  PN +TF
Sbjct: 257 YTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITF 316

Query: 134 IAALSACAHVGLVEKGREVLTCMKQMYGLVPRVEHHVCMVDMLG 3
           +A LSACAH GLV +GR V   M++ Y LVP VEHHVC+VDMLG
Sbjct: 317 VAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLG 360



 Score =  104 bits (259), Expect = 2e-20
 Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 3/194 (1%)
 Frame = -1

Query: 674 VFSSGLGEDFYIQAALITFYAKSGDLGVARMVFDQMSERSIVAWNAMLSGYEQNGFGNEA 495
           V  SG G   ++   L+     +G +   R +F  +       + +++    +  F N +
Sbjct: 35  VIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSK--FHNFS 92

Query: 494 VEIFYLMRRL---GVEPDSATIVXXXXXXXXXXXXXXGRWAHDYVVERGLDVNVILGTSL 324
           V   Y   R+    V P + T                GR  H +V+  G   +V + T+L
Sbjct: 93  VYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTAL 152

Query: 323 VNMYARCGNVGKAREVFNGMPVRNVMTWTSMISGYGMHGYGKEAIELFHQMRTCGPRPND 144
           ++ Y +CG +  AR+VF+ M  R+V+TW SMISGY  +G+ KEAI LF +M+  G  PN 
Sbjct: 153 MSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNS 212

Query: 143 VTFIAALSACAHVG 102
            TF++ LSACAH+G
Sbjct: 213 ATFVSVLSACAHLG 226


Top