BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014759
         (585 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...   299   3e-79
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun...   296   1e-78
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...   295   5e-78
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   295   5e-78
ref|XP_001785319.1| predicted protein [Physcomitrella patens sub...   291   6e-77

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score =  299 bits (765), Expect = 3e-79
 Identities = 156/198 (78%), Positives = 174/198 (87%), Gaps = 3/198 (1%)
 Frame = +1

Query: 1    QMTLNTFHYAGVSSKNVTLGVPRLREIINVAKKIKTPSLSVYLNPE--KTKEKAKNVQCA 174
            QMTLNTFHYAGVS+KNVTLGVPRLREIINVAKKIKTPSLSVYL P+  KTKE+AKNVQCA
Sbjct: 1097 QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPDVSKTKERAKNVQCA 1156

Query: 175  LEYTTLRTVTLATEMWYDPHIMTTIIEEDLDFVTSYYEMPAEEVDPEKISPWLLRIELNR 354
            LEYTTLR+VT ATE+WYDP  M+TIIEED+DFV SYYEMP EEV PEKISPWLLRIELNR
Sbjct: 1157 LEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEVAPEKISPWLLRIELNR 1216

Query: 355  EMMVKKNLSIADISEKINLEFADGLTCICSDDNAEKLILRIRIINDESPIGK-DDPADND 531
            EMMV K LS+ADI+EKINLEF D LTCI +DDNAEKLILRIRI+NDE+P G+  D +  D
Sbjct: 1217 EMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELQDESAED 1276

Query: 532  VVLLEKIESVLLADMALQ 585
             V L+KIES +L +MAL+
Sbjct: 1277 DVFLKKIESNMLTEMALR 1294


>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
            polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score =  296 bits (759), Expect = 1e-78
 Identities = 153/198 (77%), Positives = 175/198 (88%), Gaps = 3/198 (1%)
 Frame = +1

Query: 1    QMTLNTFHYAGVSSKNVTLGVPRLREIINVAKKIKTPSLSVYLNPE--KTKEKAKNVQCA 174
            QMTLNTFHYAGVS+KNVTLGVPRLREIINVAKKIKTPSLS++L PE  KTKE+AKNVQCA
Sbjct: 1097 QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLIPECNKTKERAKNVQCA 1156

Query: 175  LEYTTLRTVTLATEMWYDPHIMTTIIEEDLDFVTSYYEMPAEEVDPEKISPWLLRIELNR 354
            LEYTTLR+VT ATE+WYDP  M+TIIEED+DFV SYYEMP EE+ PEKISPWLLRIELNR
Sbjct: 1157 LEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEISPEKISPWLLRIELNR 1216

Query: 355  EMMVKKNLSIADISEKINLEFADGLTCICSDDNAEKLILRIRIINDESPIGK-DDPADND 531
            EMMV K L++ADI+EKINLEF D LTCI +DDNAEKLILRIRI+NDE+P G+ +D +  D
Sbjct: 1217 EMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAED 1276

Query: 532  VVLLEKIESVLLADMALQ 585
             V L+KIES +L +MAL+
Sbjct: 1277 DVFLKKIESNMLTEMALR 1294


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score =  295 bits (754), Expect = 5e-78
 Identities = 154/199 (77%), Positives = 176/199 (88%), Gaps = 4/199 (2%)
 Frame = +1

Query: 1    QMTLNTFHYAGVSSKNVTLGVPRLREIINVAKKIKTPSLSVYLNPE--KTKEKAKNVQCA 174
            QMTLNTFHYAGVS+KNVTLGVPRLREIINVAK+IKTPSLSVYL PE  KTKE+AK VQCA
Sbjct: 1097 QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCA 1156

Query: 175  LEYTTLRTVTLATEMWYDPHIMTTIIEEDLDFVTSYYEMPAEEVDPEKISPWLLRIELNR 354
            LEYTTLR+VT ATE+WYDP  M+TIIEED+DFV SYYEMP EE+ PEKISPWLLRIELNR
Sbjct: 1157 LEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNR 1216

Query: 355  EMMVKKNLSIADISEKINLEFADGLTCICSDDNAEKLILRIRIINDESPIGK--DDPADN 528
            EMMV K LS+A+I+EKINLEF D LTCI +DDNAEKLILRIRI+NDE+P G+  D+ A++
Sbjct: 1217 EMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAED 1276

Query: 529  DVVLLEKIESVLLADMALQ 585
            D V L+KIES +L +MAL+
Sbjct: 1277 D-VFLKKIESNMLTEMALR 1294


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score =  295 bits (754), Expect = 5e-78
 Identities = 154/199 (77%), Positives = 176/199 (88%), Gaps = 4/199 (2%)
 Frame = +1

Query: 1    QMTLNTFHYAGVSSKNVTLGVPRLREIINVAKKIKTPSLSVYLNPE--KTKEKAKNVQCA 174
            QMTLNTFHYAGVS+KNVTLGVPRLREIINVAK+IKTPSLSVYL PE  KTKE+AK VQCA
Sbjct: 1097 QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCA 1156

Query: 175  LEYTTLRTVTLATEMWYDPHIMTTIIEEDLDFVTSYYEMPAEEVDPEKISPWLLRIELNR 354
            LEYTTLR+VT ATE+WYDP  M+TIIEED+DFV SYYEMP EE+ PEKISPWLLRIELNR
Sbjct: 1157 LEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNR 1216

Query: 355  EMMVKKNLSIADISEKINLEFADGLTCICSDDNAEKLILRIRIINDESPIGK--DDPADN 528
            EMMV K LS+A+I+EKINLEF D LTCI +DDNAEKLILRIRI+NDE+P G+  D+ A++
Sbjct: 1217 EMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAED 1276

Query: 529  DVVLLEKIESVLLADMALQ 585
            D V L+KIES +L +MAL+
Sbjct: 1277 D-VFLKKIESNMLTEMALR 1294


>ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
            gi|162663074|gb|EDQ49860.1| predicted protein
            [Physcomitrella patens subsp. patens]
          Length = 1742

 Score =  291 bits (745), Expect = 6e-77
 Identities = 149/197 (75%), Positives = 170/197 (86%), Gaps = 2/197 (1%)
 Frame = +1

Query: 1    QMTLNTFHYAGVSSKNVTLGVPRLREIINVAKKIKTPSLSVYLNP--EKTKEKAKNVQCA 174
            QMTLNTFH+AGVS+KNVTLGVPRLREIINVAKKIKTPSL+VYL P   K KE+AKNVQCA
Sbjct: 1100 QMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLTVYLKPGVNKEKERAKNVQCA 1159

Query: 175  LEYTTLRTVTLATEMWYDPHIMTTIIEEDLDFVTSYYEMPAEEVDPEKISPWLLRIELNR 354
            LEYTTLR+VT ATE+WYDP  M+T+IEED++FV SYYEMP E+V PEKISPWLLRIELNR
Sbjct: 1160 LEYTTLRSVTQATEIWYDPEPMSTLIEEDMEFVKSYYEMPDEDVAPEKISPWLLRIELNR 1219

Query: 355  EMMVKKNLSIADISEKINLEFADGLTCICSDDNAEKLILRIRIINDESPIGKDDPADNDV 534
            EMMV K LS+ADI+EKINLEF D LTCI +DDNAEKLILRIRI+NDE+P G+      D 
Sbjct: 1220 EMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEMTEQSEDD 1279

Query: 535  VLLEKIESVLLADMALQ 585
            V L+KIES +L +MAL+
Sbjct: 1280 VFLKKIESNMLTEMALR 1296