BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014712
         (266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...    98   6e-19
ref|XP_004163180.1| PREDICTED: probable RNA polymerase II transc...    85   5e-15
ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transc...    85   5e-15
ref|NP_175971.3| transcription initiation factor TFIIH subunit H...    77   1e-12
ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arab...    77   1e-12

>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1 [Vitis vinifera]
           gi|296090002|emb|CBI39821.3| unnamed protein product
           [Vitis vinifera]
          Length = 602

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 47/56 (83%), Positives = 51/56 (91%)
 Frame = -2

Query: 265 EIYPKLQRIKESVQSDFRHQISLLVQPMLQALDAAFAHYDANTQKRSVKGGERLNG 98
           +IYPKLQ IKESVQSDFRHQ+SLLVQPMLQALDAAFAHYDA+ QKRS + GER NG
Sbjct: 545 QIYPKLQEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYDADQQKRSARSGERPNG 600


>ref|XP_004163180.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Cucumis sativus]
          Length = 60

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 41/58 (70%), Positives = 50/58 (86%)
 Frame = -2

Query: 265 EIYPKLQRIKESVQSDFRHQISLLVQPMLQALDAAFAHYDANTQKRSVKGGERLNGCT 92
           +IY +L+ IKE+V +DFRHQ+SLLV+PM QALDAAF H+DA+ QKRSVK GERLNG T
Sbjct: 3   KIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT 60


>ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Cucumis sativus]
          Length = 729

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 41/58 (70%), Positives = 50/58 (86%)
 Frame = -2

Query: 265 EIYPKLQRIKESVQSDFRHQISLLVQPMLQALDAAFAHYDANTQKRSVKGGERLNGCT 92
           +IY +L+ IKE+V +DFRHQ+SLLV+PM QALDAAF H+DA+ QKRSVK GERLNG T
Sbjct: 672 KIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT 729


>ref|NP_175971.3| transcription initiation factor TFIIH subunit H1 [Arabidopsis
           thaliana] gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
           Full=Probable RNA polymerase II transcription factor B
           subunit 1-1; AltName: Full=General transcription and DNA
           repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
           Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332195172|gb|AEE33293.1| transcription initiation
           factor TFIIH subunit H1 [Arabidopsis thaliana]
          Length = 591

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 36/54 (66%), Positives = 44/54 (81%)
 Frame = -2

Query: 259 YPKLQRIKESVQSDFRHQISLLVQPMLQALDAAFAHYDANTQKRSVKGGERLNG 98
           Y KL+ +KESVQSD RHQ+SLLV+PM QALDAAF HY+ + Q+R+ K GER NG
Sbjct: 536 YSKLEAMKESVQSDLRHQVSLLVRPMQQALDAAFHHYEVDLQRRTAKSGERPNG 589


>ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arabidopsis lyrata subsp.
           lyrata] gi|297340367|gb|EFH70784.1| hypothetical protein
           ARALYDRAFT_892577 [Arabidopsis lyrata subsp. lyrata]
          Length = 592

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 38/55 (69%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
 Frame = -2

Query: 259 YPKLQRIKESVQSDFRHQISLLVQPMLQALDAAFAHYDANTQKRSVK-GGERLNG 98
           Y KL+ +KESVQSD RHQ+SLLV+PM QALDAAF HY+A+ Q+R+ K GGER NG
Sbjct: 536 YSKLEAMKESVQSDLRHQVSLLVRPMQQALDAAFQHYEADLQRRTAKSGGERPNG 590