BLASTX nr result
ID: Coptis24_contig00014605
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00014605
(668 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264417.1| PREDICTED: KH domain-containing protein At4g... 201 8e-52
emb|CBI17917.3| unnamed protein product [Vitis vinifera] 201 8e-52
emb|CAN82085.1| hypothetical protein VITISV_031054 [Vitis vinifera] 179 3e-45
ref|XP_002332094.1| predicted protein [Populus trichocarpa] gi|2... 176 5e-43
ref|XP_002330818.1| predicted protein [Populus trichocarpa] gi|2... 175 8e-42
>ref|XP_002264417.1| PREDICTED: KH domain-containing protein At4g18375 isoform 1 [Vitis
vinifera]
Length = 466
Score = 201 bits (510), Expect(2) = 8e-52
Identities = 109/160 (68%), Positives = 130/160 (81%), Gaps = 4/160 (2%)
Frame = +2
Query: 83 TSQAGIISDYPLLIKRDSVFLGRDTQLESQMHHSSL---GHDPVLSVLRTSGLSRASSAI 253
TSQ G+ SDY L KR+S++L R+TQ+E HS L G + LS +R+SGL RA + I
Sbjct: 283 TSQTGMGSDYSLPAKRESLYLDRETQME----HSGLPMYGQEHGLSGIRSSGLGRAGAPI 338
Query: 254 ISQLTQTMQIPLAYAEDFIGIGVANIGYIRRTSGAILTVQESRGLPDEITVEIKGTTSQV 433
++Q+ QTMQIPL+YAED IGIG ANI YIRRTSGAILTVQESRGLPDEITVEIKGT+SQV
Sbjct: 339 VTQIAQTMQIPLSYAEDIIGIGGANIAYIRRTSGAILTVQESRGLPDEITVEIKGTSSQV 398
Query: 434 KTAQQLIQDFLAGHKDPVSSRYGKMDTGLR-SYSQLGGTS 550
+TAQQLIQ+F++ HK+PV S YGKMD+GLR SYSQLG TS
Sbjct: 399 QTAQQLIQEFISNHKEPVPSSYGKMDSGLRSSYSQLGNTS 438
Score = 29.3 bits (64), Expect(2) = 8e-52
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 4 NPTVSQERPAETWADKAV 57
N T+SQ+R ++TWADK++
Sbjct: 262 NATISQDRQSDTWADKSL 279
>emb|CBI17917.3| unnamed protein product [Vitis vinifera]
Length = 364
Score = 201 bits (510), Expect(2) = 8e-52
Identities = 109/160 (68%), Positives = 130/160 (81%), Gaps = 4/160 (2%)
Frame = +2
Query: 83 TSQAGIISDYPLLIKRDSVFLGRDTQLESQMHHSSL---GHDPVLSVLRTSGLSRASSAI 253
TSQ G+ SDY L KR+S++L R+TQ+E HS L G + LS +R+SGL RA + I
Sbjct: 181 TSQTGMGSDYSLPAKRESLYLDRETQME----HSGLPMYGQEHGLSGIRSSGLGRAGAPI 236
Query: 254 ISQLTQTMQIPLAYAEDFIGIGVANIGYIRRTSGAILTVQESRGLPDEITVEIKGTTSQV 433
++Q+ QTMQIPL+YAED IGIG ANI YIRRTSGAILTVQESRGLPDEITVEIKGT+SQV
Sbjct: 237 VTQIAQTMQIPLSYAEDIIGIGGANIAYIRRTSGAILTVQESRGLPDEITVEIKGTSSQV 296
Query: 434 KTAQQLIQDFLAGHKDPVSSRYGKMDTGLR-SYSQLGGTS 550
+TAQQLIQ+F++ HK+PV S YGKMD+GLR SYSQLG TS
Sbjct: 297 QTAQQLIQEFISNHKEPVPSSYGKMDSGLRSSYSQLGNTS 336
Score = 29.3 bits (64), Expect(2) = 8e-52
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 4 NPTVSQERPAETWADKAV 57
N T+SQ+R ++TWADK++
Sbjct: 160 NATISQDRQSDTWADKSL 177
>emb|CAN82085.1| hypothetical protein VITISV_031054 [Vitis vinifera]
Length = 473
Score = 179 bits (453), Expect(2) = 3e-45
Identities = 101/160 (63%), Positives = 121/160 (75%), Gaps = 4/160 (2%)
Frame = +2
Query: 83 TSQAGIISDYPLLIKRDSVFLGRDTQLESQMHHSSL---GHDPVLSVLRTSGLSRASSAI 253
TSQ G+ SDY L KR+S++L R+TQ+E HS L G + LS +R+SGL RA + I
Sbjct: 299 TSQTGMGSDYSLPAKRESLYLDRETQME----HSGLPMYGQEHGLSGIRSSGLGRAGAPI 354
Query: 254 ISQLTQTMQIPLAYAEDFIGIGVANIGYIRRTSGAILTVQESRGLPDEITVEIKGTTSQV 433
++Q+ QTMQIPL+YAED IGIG ANI YIRRTSGAILTVQESRGLPDEITVEIKGT+S
Sbjct: 355 VTQIAQTMQIPLSYAEDIIGIGGANIAYIRRTSGAILTVQESRGLPDEITVEIKGTSS-- 412
Query: 434 KTAQQLIQDFLAGHKDPVSSRYGKMDTGLR-SYSQLGGTS 550
Q+F++ HK+PV S YGKMD+GLR SYSQLG TS
Sbjct: 413 -------QEFISNHKEPVPSSYGKMDSGLRSSYSQLGNTS 445
Score = 29.3 bits (64), Expect(2) = 3e-45
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 4 NPTVSQERPAETWADKAV 57
N T+SQ+R ++TWADK++
Sbjct: 278 NATISQDRQSDTWADKSL 295
>ref|XP_002332094.1| predicted protein [Populus trichocarpa] gi|222874914|gb|EEF12045.1|
predicted protein [Populus trichocarpa]
Length = 460
Score = 176 bits (447), Expect(2) = 5e-43
Identities = 89/151 (58%), Positives = 117/151 (77%), Gaps = 2/151 (1%)
Frame = +2
Query: 92 AGIISDYPLLIKRDSVFLGRDTQLESQMHHS--SLGHDPVLSVLRTSGLSRASSAIISQL 265
+GIISDY L +KRD +T E ++ SL DP L LR++GL RA++ I++Q+
Sbjct: 269 SGIISDYSLSLKRDPSIYEHETHFEHKISQPGFSLYGDPGLVGLRSTGLGRATAPIVTQV 328
Query: 266 TQTMQIPLAYAEDFIGIGVANIGYIRRTSGAILTVQESRGLPDEITVEIKGTTSQVKTAQ 445
TQTMQ+PL+YAED IG+ +NI YIRRTSGAIL++QESRGLPDEITVEIKGT+SQV+ AQ
Sbjct: 329 TQTMQVPLSYAEDIIGVAGSNIAYIRRTSGAILSIQESRGLPDEITVEIKGTSSQVQMAQ 388
Query: 446 QLIQDFLAGHKDPVSSRYGKMDTGLRSYSQL 538
QLIQ+F++ HK+P + YGK+D GL +YSQ+
Sbjct: 389 QLIQEFISNHKEPTPNMYGKIDVGLNAYSQI 419
Score = 23.9 bits (50), Expect(2) = 5e-43
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 4 NPTVSQERPAETWADKA 54
N T+S ERPA+ AD A
Sbjct: 241 NATISLERPADACADNA 257
>ref|XP_002330818.1| predicted protein [Populus trichocarpa] gi|222872620|gb|EEF09751.1|
predicted protein [Populus trichocarpa]
Length = 405
Score = 175 bits (443), Expect = 8e-42
Identities = 91/170 (53%), Positives = 119/170 (70%), Gaps = 3/170 (1%)
Frame = +2
Query: 47 IKQSLVQTASQATSQAGIISDYPLLIKRDSVFLGRDTQLESQMHHSSL---GHDPVLSVL 217
I Q + +A T +GI SDY L KRD +TQ E ++ L G DP +
Sbjct: 212 IAQPSLHSAYVPTIPSGIASDYSLSFKRDPSIYEHETQFEHKISQPGLSIYGQDPGIVGF 271
Query: 218 RTSGLSRASSAIISQLTQTMQIPLAYAEDFIGIGVANIGYIRRTSGAILTVQESRGLPDE 397
R++GL RA++ I++Q+TQTMQ+PL+YAED IG+ +NI YIRRTS AIL++QESRGLPDE
Sbjct: 272 RSTGLGRAAAPIVTQVTQTMQVPLSYAEDIIGVAGSNIAYIRRTSRAILSIQESRGLPDE 331
Query: 398 ITVEIKGTTSQVKTAQQLIQDFLAGHKDPVSSRYGKMDTGLRSYSQLGGT 547
ITVEIKGT +QV+ AQQLIQ+F+ HK+P SS YGK+D GL +YS + T
Sbjct: 332 ITVEIKGTGAQVQMAQQLIQEFITNHKEPASSMYGKIDAGLSAYSHMAET 381