BLASTX nr result
ID: Coptis24_contig00014562
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00014562
(1048 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002525113.1| splicing factor u2af large subunit, putative... 139 2e-30
gb|AEI98617.1| hypothetical protein 111O18.4 [Coffea canephora] 138 2e-30
gb|ABU45194.1| unknown [Petunia integrifolia subsp. inflata] 138 2e-30
sp|Q9ZR40.1|U2A2B_NICPL RecName: Full=Splicing factor U2af large... 138 2e-30
sp|Q9ZR39.1|U2A2A_NICPL RecName: Full=Splicing factor U2af large... 138 3e-30
>ref|XP_002525113.1| splicing factor u2af large subunit, putative [Ricinus communis]
gi|223535572|gb|EEF37240.1| splicing factor u2af large
subunit, putative [Ricinus communis]
Length = 549
Score = 139 bits (349), Expect = 2e-30
Identities = 72/120 (60%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Frame = -1
Query: 1048 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 872
Q TRHA RVYVGGLP A+EQ + +FF HV+ IG +T GP AVVN++IN EK FA +E
Sbjct: 250 QATRHARRVYVGGLPPTANEQSVATFFSHVMAAIGGNTAGPGDAVVNVYINHEKKFAFVE 309
Query: 871 MSSVALASNTMALNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSA 692
M SV ASN MAL+GIIFEG +++RR SDYNP LAA LGP+QP+ L L A+ P SA
Sbjct: 310 MRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLGAVGLTPGSA 369
>gb|AEI98617.1| hypothetical protein 111O18.4 [Coffea canephora]
Length = 570
Score = 138 bits (348), Expect = 2e-30
Identities = 72/120 (60%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Frame = -1
Query: 1048 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 872
Q TRHA RVYVGGLP A+EQ + +FF HV+ IG +T GP AVVN++IN EK FA +E
Sbjct: 231 QATRHARRVYVGGLPPTANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINHEKKFAFVE 290
Query: 871 MSSVALASNTMALNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSA 692
M SV ASN MAL+GIIFEG +++RR SDYNP LAA LGP+QP+ L L A+ P SA
Sbjct: 291 MRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSA 350
Score = 66.2 bits (160), Expect = 1e-08
Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 7/251 (2%)
Frame = -1
Query: 1027 RVYVGGLPAGADEQKIVSFFGHVLVDIGAHTGPALAVVNIHINREKNFAI-----LEMSS 863
R++VGGLP E +I +L G G L V + K +A L ++
Sbjct: 358 RIFVGGLPYYFTEGQI----RELLESFGPLRGFDL-VKDRETGNSKGYAFCVYQDLSVTD 412
Query: 862 VALASNTMALNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSATND 683
+A A ALNGI +L +RR AN G TQP +
Sbjct: 413 IACA----ALNGIKMGDKTLTVRR---------ANQGVTQPK----------------PE 443
Query: 682 QDSMFRRKMLALAWEASIPHSNGLDARRSHVVCLLEAVCASNPLCDDEYK-CLEGFFWKT 506
Q+S+ +A + + L + V+CL + V A D++Y LE +
Sbjct: 444 QESVLLHAQQQIALQKLMLQPGTLATK---VLCLTQVVSADELRDDEDYADILEDMRLEC 500
Query: 505 GEIYGKLKSVYVPRPDGKQKGLP-IGRVFLEYELMKSAVEAMEGINGKVLGRERVLAFYY 329
G+ L ++ +PRP P +G+VFLEY ++SA +A +G++G+ G +V+A +Y
Sbjct: 501 GKF--TLVNLVIPRPSPTGDPTPGVGKVFLEYADVESANKARQGLHGRRFGGNQVVAVFY 558
Query: 328 PEDKYASKEWD 296
PE++++ ++D
Sbjct: 559 PENRFSQGDYD 569
>gb|ABU45194.1| unknown [Petunia integrifolia subsp. inflata]
Length = 557
Score = 138 bits (348), Expect = 2e-30
Identities = 71/120 (59%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Frame = -1
Query: 1048 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 872
Q TRHA RVYVGGLP A+EQ + +FF HV+ IG +T GP AVVN++IN EK FA +E
Sbjct: 220 QATRHARRVYVGGLPPSANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVE 279
Query: 871 MSSVALASNTMALNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSA 692
M SV ASN MAL+G+IFEG +++RR SDYNP LAA LGP+QPS L L A+ P S+
Sbjct: 280 MRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSS 339
Score = 60.8 bits (146), Expect = 5e-07
Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 3/247 (1%)
Frame = -1
Query: 1027 RVYVGGLPAGADEQKIVSFFGHVLVDIGAHTGPALAVVNIHINREKNFAILEMSSVALAS 848
R++VGGLP E +I +L G G L V + K +A V++
Sbjct: 347 RIFVGGLPYYFTESQI----RELLESFGQLRGFDL-VKDRETGNSKGYAFCVYQDVSVTD 401
Query: 847 NTMA-LNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSATNDQDSM 671
A LNGI +L +RR AN G QP+ +Q+S+
Sbjct: 402 IACAALNGIKMGDKTLTVRR---------ANQGTPQPN----------------PEQESV 436
Query: 670 FRRKMLALAWEASIPHSNGLDARRSHVVCLLEAVCASNPLCDDEYK-CLEGFFWKTGEIY 494
+A + + L + V+CL +AV DD+Y+ LE + G+ +
Sbjct: 437 LLHAQQQIALQKFMFQPGALATK---VLCLTQAVSVDELNDDDDYQDILEDMRTECGK-F 492
Query: 493 GKLKSVYVPRPDGKQKGLP-IGRVFLEYELMKSAVEAMEGINGKVLGRERVLAFYYPEDK 317
G L +V +PRP+ + P IG+ Y + + +A +G+NG+ G +V+A +YPE+K
Sbjct: 493 GALLNVVIPRPNPNGEPTPGIGK----YADVDGSSKARQGLNGRKFGGNQVVAVFYPENK 548
Query: 316 YASKEWD 296
++ +++
Sbjct: 549 FSEGDYE 555
>sp|Q9ZR40.1|U2A2B_NICPL RecName: Full=Splicing factor U2af large subunit B; AltName:
Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa
subunit B; AltName: Full=U2 small nuclear
ribonucleoprotein auxiliary factor large subunit B;
Short=U2 snRNP auxiliary factor large subunit B
gi|3850821|emb|CAA77135.1| U2 snRNP auxiliary factor,
large subunit [Nicotiana plumbaginifolia]
Length = 573
Score = 138 bits (348), Expect = 2e-30
Identities = 73/120 (60%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Frame = -1
Query: 1048 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 872
Q TRHA RVYVGGLPA A+EQ + +FF HV+ IG +T GP AVVN++IN EK FA +E
Sbjct: 233 QATRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVE 292
Query: 871 MSSVALASNTMALNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSA 692
M SV ASN MAL+GIIFEG ++RR SDYNP LAA LGP+QP+ L L A+ P SA
Sbjct: 293 MRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSA 352
Score = 68.9 bits (167), Expect = 2e-09
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 3/247 (1%)
Frame = -1
Query: 1027 RVYVGGLPAGADEQKIVSFFGHVLVDIGAHTGPALAVVNIHINREKNFAILEMSSVALAS 848
R++VGGLP E +I +L G G L V + K +A V++
Sbjct: 360 RIFVGGLPYYFTEAQI----RELLESFGPLRGFDL-VKDRETGNSKGYAFCVYQDVSVTD 414
Query: 847 NTMA-LNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSATNDQDSM 671
A LNGI +L +RR AN G TQP +Q+S+
Sbjct: 415 IACAALNGIKMGDKTLTVRR---------ANQGTTQPK----------------PEQESV 449
Query: 670 FRRKMLALAWEASIPHSNGLDARRSHVVCLLEAVCASNPLCDDEYK-CLEGFFWKTGEIY 494
+A + + L + V+ L E + A D++Y+ LE + G+ +
Sbjct: 450 LLHAQQQIALQRLMLQPATLATK---VLSLTEVISADELNDDEDYQDILEDMRTECGK-F 505
Query: 493 GKLKSVYVPRPDGKQKGLP-IGRVFLEYELMKSAVEAMEGINGKVLGRERVLAFYYPEDK 317
G L +V +PRP + P +G+VFLEY + S+ +A + +NG+ G +V+A +YPE+K
Sbjct: 506 GSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENK 565
Query: 316 YASKEWD 296
+ ++D
Sbjct: 566 FYEGDYD 572
>sp|Q9ZR39.1|U2A2A_NICPL RecName: Full=Splicing factor U2af large subunit A; AltName:
Full=NpU2AF65a; AltName: Full=U2 auxiliary factor 65 kDa
subunit A; AltName: Full=U2 small nuclear
ribonucleoprotein auxiliary factor large subunit A;
Short=U2 snRNP auxiliary factor large subunit A
gi|3850823|emb|CAA77136.1| U2 snRNP auxiliary factor,
large subunit [Nicotiana plumbaginifolia]
Length = 555
Score = 138 bits (347), Expect = 3e-30
Identities = 71/120 (59%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Frame = -1
Query: 1048 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 872
Q TRHA RVYVGGLP A+EQ + +FF HV+ IG +T GP AVVN++IN EK FA +E
Sbjct: 215 QATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVE 274
Query: 871 MSSVALASNTMALNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSA 692
M SV ASN MAL+G+IFEG +++RR SDYNP LAA LGP+QPS L L A+ P S+
Sbjct: 275 MRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSS 334
Score = 74.3 bits (181), Expect = 5e-11
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 2/246 (0%)
Frame = -1
Query: 1027 RVYVGGLPAGADEQKIVSFFGHVLVDIGAHTGPALAVVNIHINREKNFAILEMSSVALAS 848
R++VGGLP E +I +L G G L V + K +A V++
Sbjct: 342 RIFVGGLPYYFTESQI----RELLESFGQLRGFDL-VKDRETGNSKGYAFCVYQDVSVTD 396
Query: 847 NTMA-LNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSATNDQDSM 671
A LNGI +L +RR AN G TQP+ +Q+S+
Sbjct: 397 IACAALNGIKMGDKTLTVRR---------ANQGTTQPN----------------PEQESV 431
Query: 670 FRRKMLALAWEASIPHSNGLDARRSHVVCLLEAVCASNPLCDDEYKCLEGFFWKTGEIYG 491
+A + + L + V+CL E V DD+Y+ + E +G
Sbjct: 432 LLHAQQQIALQRFMLQPGALATK---VLCLTEVVTVDELNDDDDYQDILEDMRTECEKFG 488
Query: 490 KLKSVYVPRPDGKQKGLP-IGRVFLEYELMKSAVEAMEGINGKVLGRERVLAFYYPEDKY 314
L +V +PRP+ P +G+VFLEY + + +A +G+NG+ G +V+A +YPE+K+
Sbjct: 489 ALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKF 548
Query: 313 ASKEWD 296
+ +++
Sbjct: 549 SEGDYE 554