BLASTX nr result

ID: Coptis24_contig00014562 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014562
         (1048 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525113.1| splicing factor u2af large subunit, putative...   139   2e-30
gb|AEI98617.1| hypothetical protein 111O18.4 [Coffea canephora]       138   2e-30
gb|ABU45194.1| unknown [Petunia integrifolia subsp. inflata]          138   2e-30
sp|Q9ZR40.1|U2A2B_NICPL RecName: Full=Splicing factor U2af large...   138   2e-30
sp|Q9ZR39.1|U2A2A_NICPL RecName: Full=Splicing factor U2af large...   138   3e-30

>ref|XP_002525113.1| splicing factor u2af large subunit, putative [Ricinus communis]
            gi|223535572|gb|EEF37240.1| splicing factor u2af large
            subunit, putative [Ricinus communis]
          Length = 549

 Score =  139 bits (349), Expect = 2e-30
 Identities = 72/120 (60%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
 Frame = -1

Query: 1048 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 872
            Q TRHA RVYVGGLP  A+EQ + +FF HV+  IG +T GP  AVVN++IN EK FA +E
Sbjct: 250  QATRHARRVYVGGLPPTANEQSVATFFSHVMAAIGGNTAGPGDAVVNVYINHEKKFAFVE 309

Query: 871  MSSVALASNTMALNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSA 692
            M SV  ASN MAL+GIIFEG  +++RR SDYNP LAA LGP+QP+  L L A+   P SA
Sbjct: 310  MRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLGAVGLTPGSA 369


>gb|AEI98617.1| hypothetical protein 111O18.4 [Coffea canephora]
          Length = 570

 Score =  138 bits (348), Expect = 2e-30
 Identities = 72/120 (60%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
 Frame = -1

Query: 1048 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 872
            Q TRHA RVYVGGLP  A+EQ + +FF HV+  IG +T GP  AVVN++IN EK FA +E
Sbjct: 231  QATRHARRVYVGGLPPTANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINHEKKFAFVE 290

Query: 871  MSSVALASNTMALNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSA 692
            M SV  ASN MAL+GIIFEG  +++RR SDYNP LAA LGP+QP+  L L A+   P SA
Sbjct: 291  MRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSA 350



 Score = 66.2 bits (160), Expect = 1e-08
 Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 7/251 (2%)
 Frame = -1

Query: 1027 RVYVGGLPAGADEQKIVSFFGHVLVDIGAHTGPALAVVNIHINREKNFAI-----LEMSS 863
            R++VGGLP    E +I      +L   G   G  L V +      K +A      L ++ 
Sbjct: 358  RIFVGGLPYYFTEGQI----RELLESFGPLRGFDL-VKDRETGNSKGYAFCVYQDLSVTD 412

Query: 862  VALASNTMALNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSATND 683
            +A A    ALNGI     +L +RR         AN G TQP                  +
Sbjct: 413  IACA----ALNGIKMGDKTLTVRR---------ANQGVTQPK----------------PE 443

Query: 682  QDSMFRRKMLALAWEASIPHSNGLDARRSHVVCLLEAVCASNPLCDDEYK-CLEGFFWKT 506
            Q+S+       +A +  +     L  +   V+CL + V A     D++Y   LE    + 
Sbjct: 444  QESVLLHAQQQIALQKLMLQPGTLATK---VLCLTQVVSADELRDDEDYADILEDMRLEC 500

Query: 505  GEIYGKLKSVYVPRPDGKQKGLP-IGRVFLEYELMKSAVEAMEGINGKVLGRERVLAFYY 329
            G+    L ++ +PRP       P +G+VFLEY  ++SA +A +G++G+  G  +V+A +Y
Sbjct: 501  GKF--TLVNLVIPRPSPTGDPTPGVGKVFLEYADVESANKARQGLHGRRFGGNQVVAVFY 558

Query: 328  PEDKYASKEWD 296
            PE++++  ++D
Sbjct: 559  PENRFSQGDYD 569


>gb|ABU45194.1| unknown [Petunia integrifolia subsp. inflata]
          Length = 557

 Score =  138 bits (348), Expect = 2e-30
 Identities = 71/120 (59%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
 Frame = -1

Query: 1048 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 872
            Q TRHA RVYVGGLP  A+EQ + +FF HV+  IG +T GP  AVVN++IN EK FA +E
Sbjct: 220  QATRHARRVYVGGLPPSANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVE 279

Query: 871  MSSVALASNTMALNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSA 692
            M SV  ASN MAL+G+IFEG  +++RR SDYNP LAA LGP+QPS  L L A+   P S+
Sbjct: 280  MRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSS 339



 Score = 60.8 bits (146), Expect = 5e-07
 Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 3/247 (1%)
 Frame = -1

Query: 1027 RVYVGGLPAGADEQKIVSFFGHVLVDIGAHTGPALAVVNIHINREKNFAILEMSSVALAS 848
            R++VGGLP    E +I      +L   G   G  L V +      K +A      V++  
Sbjct: 347  RIFVGGLPYYFTESQI----RELLESFGQLRGFDL-VKDRETGNSKGYAFCVYQDVSVTD 401

Query: 847  NTMA-LNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSATNDQDSM 671
               A LNGI     +L +RR         AN G  QP+                 +Q+S+
Sbjct: 402  IACAALNGIKMGDKTLTVRR---------ANQGTPQPN----------------PEQESV 436

Query: 670  FRRKMLALAWEASIPHSNGLDARRSHVVCLLEAVCASNPLCDDEYK-CLEGFFWKTGEIY 494
                   +A +  +     L  +   V+CL +AV       DD+Y+  LE    + G+ +
Sbjct: 437  LLHAQQQIALQKFMFQPGALATK---VLCLTQAVSVDELNDDDDYQDILEDMRTECGK-F 492

Query: 493  GKLKSVYVPRPDGKQKGLP-IGRVFLEYELMKSAVEAMEGINGKVLGRERVLAFYYPEDK 317
            G L +V +PRP+   +  P IG+    Y  +  + +A +G+NG+  G  +V+A +YPE+K
Sbjct: 493  GALLNVVIPRPNPNGEPTPGIGK----YADVDGSSKARQGLNGRKFGGNQVVAVFYPENK 548

Query: 316  YASKEWD 296
            ++  +++
Sbjct: 549  FSEGDYE 555


>sp|Q9ZR40.1|U2A2B_NICPL RecName: Full=Splicing factor U2af large subunit B; AltName:
            Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa
            subunit B; AltName: Full=U2 small nuclear
            ribonucleoprotein auxiliary factor large subunit B;
            Short=U2 snRNP auxiliary factor large subunit B
            gi|3850821|emb|CAA77135.1| U2 snRNP auxiliary factor,
            large subunit [Nicotiana plumbaginifolia]
          Length = 573

 Score =  138 bits (348), Expect = 2e-30
 Identities = 73/120 (60%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
 Frame = -1

Query: 1048 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 872
            Q TRHA RVYVGGLPA A+EQ + +FF HV+  IG +T GP  AVVN++IN EK FA +E
Sbjct: 233  QATRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVE 292

Query: 871  MSSVALASNTMALNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSA 692
            M SV  ASN MAL+GIIFEG   ++RR SDYNP LAA LGP+QP+  L L A+   P SA
Sbjct: 293  MRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSA 352



 Score = 68.9 bits (167), Expect = 2e-09
 Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 3/247 (1%)
 Frame = -1

Query: 1027 RVYVGGLPAGADEQKIVSFFGHVLVDIGAHTGPALAVVNIHINREKNFAILEMSSVALAS 848
            R++VGGLP    E +I      +L   G   G  L V +      K +A      V++  
Sbjct: 360  RIFVGGLPYYFTEAQI----RELLESFGPLRGFDL-VKDRETGNSKGYAFCVYQDVSVTD 414

Query: 847  NTMA-LNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSATNDQDSM 671
               A LNGI     +L +RR         AN G TQP                  +Q+S+
Sbjct: 415  IACAALNGIKMGDKTLTVRR---------ANQGTTQPK----------------PEQESV 449

Query: 670  FRRKMLALAWEASIPHSNGLDARRSHVVCLLEAVCASNPLCDDEYK-CLEGFFWKTGEIY 494
                   +A +  +     L  +   V+ L E + A     D++Y+  LE    + G+ +
Sbjct: 450  LLHAQQQIALQRLMLQPATLATK---VLSLTEVISADELNDDEDYQDILEDMRTECGK-F 505

Query: 493  GKLKSVYVPRPDGKQKGLP-IGRVFLEYELMKSAVEAMEGINGKVLGRERVLAFYYPEDK 317
            G L +V +PRP    +  P +G+VFLEY  + S+ +A + +NG+  G  +V+A +YPE+K
Sbjct: 506  GSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENK 565

Query: 316  YASKEWD 296
            +   ++D
Sbjct: 566  FYEGDYD 572


>sp|Q9ZR39.1|U2A2A_NICPL RecName: Full=Splicing factor U2af large subunit A; AltName:
            Full=NpU2AF65a; AltName: Full=U2 auxiliary factor 65 kDa
            subunit A; AltName: Full=U2 small nuclear
            ribonucleoprotein auxiliary factor large subunit A;
            Short=U2 snRNP auxiliary factor large subunit A
            gi|3850823|emb|CAA77136.1| U2 snRNP auxiliary factor,
            large subunit [Nicotiana plumbaginifolia]
          Length = 555

 Score =  138 bits (347), Expect = 3e-30
 Identities = 71/120 (59%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
 Frame = -1

Query: 1048 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 872
            Q TRHA RVYVGGLP  A+EQ + +FF HV+  IG +T GP  AVVN++IN EK FA +E
Sbjct: 215  QATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVE 274

Query: 871  MSSVALASNTMALNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSA 692
            M SV  ASN MAL+G+IFEG  +++RR SDYNP LAA LGP+QPS  L L A+   P S+
Sbjct: 275  MRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSS 334



 Score = 74.3 bits (181), Expect = 5e-11
 Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 2/246 (0%)
 Frame = -1

Query: 1027 RVYVGGLPAGADEQKIVSFFGHVLVDIGAHTGPALAVVNIHINREKNFAILEMSSVALAS 848
            R++VGGLP    E +I      +L   G   G  L V +      K +A      V++  
Sbjct: 342  RIFVGGLPYYFTESQI----RELLESFGQLRGFDL-VKDRETGNSKGYAFCVYQDVSVTD 396

Query: 847  NTMA-LNGIIFEGTSLRIRRLSDYNPGLAANLGPTQPSCYLKLEAIDRLPLSATNDQDSM 671
               A LNGI     +L +RR         AN G TQP+                 +Q+S+
Sbjct: 397  IACAALNGIKMGDKTLTVRR---------ANQGTTQPN----------------PEQESV 431

Query: 670  FRRKMLALAWEASIPHSNGLDARRSHVVCLLEAVCASNPLCDDEYKCLEGFFWKTGEIYG 491
                   +A +  +     L  +   V+CL E V       DD+Y+ +        E +G
Sbjct: 432  LLHAQQQIALQRFMLQPGALATK---VLCLTEVVTVDELNDDDDYQDILEDMRTECEKFG 488

Query: 490  KLKSVYVPRPDGKQKGLP-IGRVFLEYELMKSAVEAMEGINGKVLGRERVLAFYYPEDKY 314
             L +V +PRP+      P +G+VFLEY  +  + +A +G+NG+  G  +V+A +YPE+K+
Sbjct: 489  ALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKF 548

Query: 313  ASKEWD 296
            +  +++
Sbjct: 549  SEGDYE 554


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