BLASTX nr result
ID: Coptis24_contig00014539
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00014539
(1597 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279533.1| PREDICTED: DNA polymerase delta small subuni... 719 0.0
emb|CAN71889.1| hypothetical protein VITISV_040861 [Vitis vinifera] 719 0.0
ref|NP_973664.1| DNA polymerase delta subunit 2 [Arabidopsis tha... 692 0.0
ref|NP_181742.2| DNA polymerase delta subunit 2 [Arabidopsis tha... 687 0.0
ref|XP_003521214.1| PREDICTED: DNA polymerase delta small subuni... 687 0.0
>ref|XP_002279533.1| PREDICTED: DNA polymerase delta small subunit [Vitis vinifera]
gi|297739835|emb|CBI30017.3| unnamed protein product
[Vitis vinifera]
Length = 439
Score = 719 bits (1856), Expect = 0.0
Identities = 341/428 (79%), Positives = 388/428 (90%)
Frame = +2
Query: 35 LERKQSLYRSLDEIFEIQKDKYTGQQYSQIYFARLHVIRNLLYSLANTWKPHLPICTILG 214
L+RKQSLY SLDE F I+K+ Y GQQYSQIYFARLH++R L+YSL WKPHLP+CT+LG
Sbjct: 9 LQRKQSLYESLDEKFRIEKETYRGQQYSQIYFARLHMMRTLIYSLIPNWKPHLPVCTVLG 68
Query: 215 LEKGKECIVVGTLYKHMKLKPCILNDYSKERSVLPIVKPHNFMHPDDRLILEDESGRVKL 394
LE+GKECI+VGTLYKHMKLKPCIL++YSKERSV P+VKPHNFMH DD L+LEDESGRVKL
Sbjct: 69 LEEGKECIIVGTLYKHMKLKPCILDEYSKERSVAPLVKPHNFMHSDDSLVLEDESGRVKL 128
Query: 395 GGTMLSPSFFVTGVVVALHGSETSAGEFVVQDILEAGLPPQIELPLDSGEDKYVVFVSGL 574
GGTML PS +VTG VV LHG ETSAGEF+VQDIL+A LPPQIELPL S EDKYVVFVSGL
Sbjct: 129 GGTMLLPSVYVTGTVVGLHGKETSAGEFLVQDILDADLPPQIELPLKSREDKYVVFVSGL 188
Query: 575 SVGNDMSNPLEFQLLVDHITGHLGDDKEQLIASQIVRVVIAGNSVEVQHGLLNGKTLAAK 754
SVG+ SNPL+FQLLVDHITGHLGD+KEQ IA+QIV VVIAGNSV V GLLNG+ LA+K
Sbjct: 189 SVGSSTSNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVIAGNSVAVPRGLLNGQNLASK 248
Query: 755 EQSRLSEPVKELDILLTQLAVAVPLDIMPGLNDPANFALPQQPLHRCLFRGASAYNTFQS 934
+QSRLSEP+KELDILLTQ+A +PLDIMPG +DPANF+LPQQPLHRCLF G+SAYN+F+S
Sbjct: 249 DQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPGSSAYNSFRS 308
Query: 935 CTNPHLFEIDNIRFLGTSGQNIDDLDKYAEAKDRLDFMERTLMWRHIAPTTPNTLGCYPF 1114
CTNPH FE++NIRFLGTSGQN+DDL+KY+EAKD+L+FMERTL WRH+APT PNTLGCYPF
Sbjct: 309 CTNPHSFELENIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPF 368
Query: 1115 TDRDPFLIESCPNVYFVGNQNKYETRLAKGSEGQLVRLICIPKFSESSVAVMLNLRNLEC 1294
TDRDPFLIESCP+VYFVGNQ+KYETRL KGSEGQ+VRLICIPKF E+ VAV+LN+RNLEC
Sbjct: 369 TDRDPFLIESCPHVYFVGNQDKYETRLIKGSEGQVVRLICIPKFCETGVAVVLNMRNLEC 428
Query: 1295 HTLSFSTQ 1318
H LSF T+
Sbjct: 429 HALSFGTE 436
>emb|CAN71889.1| hypothetical protein VITISV_040861 [Vitis vinifera]
Length = 439
Score = 719 bits (1856), Expect = 0.0
Identities = 341/428 (79%), Positives = 388/428 (90%)
Frame = +2
Query: 35 LERKQSLYRSLDEIFEIQKDKYTGQQYSQIYFARLHVIRNLLYSLANTWKPHLPICTILG 214
L+RKQSLY SLDE F I+K+ Y GQQYSQIYFARLH++R L+YSL WKPHLP+CT+LG
Sbjct: 9 LQRKQSLYESLDEKFRIEKETYRGQQYSQIYFARLHMMRTLIYSLIPNWKPHLPVCTVLG 68
Query: 215 LEKGKECIVVGTLYKHMKLKPCILNDYSKERSVLPIVKPHNFMHPDDRLILEDESGRVKL 394
LE+GKECI+VGTLYKHMKLKPCIL++YSKERSV P+VKPHNFMH DD L+LEDESGRVKL
Sbjct: 69 LEEGKECIIVGTLYKHMKLKPCILDEYSKERSVAPLVKPHNFMHSDDSLVLEDESGRVKL 128
Query: 395 GGTMLSPSFFVTGVVVALHGSETSAGEFVVQDILEAGLPPQIELPLDSGEDKYVVFVSGL 574
GGTML PS +VTG VV LHG ETSAGEF+VQDIL+A LPPQIELPL S EDKYVVFVSGL
Sbjct: 129 GGTMLLPSVYVTGTVVGLHGKETSAGEFLVQDILDADLPPQIELPLKSREDKYVVFVSGL 188
Query: 575 SVGNDMSNPLEFQLLVDHITGHLGDDKEQLIASQIVRVVIAGNSVEVQHGLLNGKTLAAK 754
SVG+ SNPL+FQLLVDHITGHLGD+KEQ IA+QIV VVIAGNSV V GLLNG+ LA+K
Sbjct: 189 SVGSSXSNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVIAGNSVAVPRGLLNGQNLASK 248
Query: 755 EQSRLSEPVKELDILLTQLAVAVPLDIMPGLNDPANFALPQQPLHRCLFRGASAYNTFQS 934
+QSRLSEP+KELDILLTQ+A +PLDIMPG +DPANF+LPQQPLHRCLF G+SAYN+F+S
Sbjct: 249 DQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPGSSAYNSFRS 308
Query: 935 CTNPHLFEIDNIRFLGTSGQNIDDLDKYAEAKDRLDFMERTLMWRHIAPTTPNTLGCYPF 1114
CTNPH FE++NIRFLGTSGQN+DDL+KY+EAKD+L+FMERTL WRH+APT PNTLGCYPF
Sbjct: 309 CTNPHSFELENIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPF 368
Query: 1115 TDRDPFLIESCPNVYFVGNQNKYETRLAKGSEGQLVRLICIPKFSESSVAVMLNLRNLEC 1294
TDRDPFLIESCP+VYFVGNQ+KYETRL KGSEGQ+VRLICIPKF E+ VAV+LN+RNLEC
Sbjct: 369 TDRDPFLIESCPHVYFVGNQDKYETRLIKGSEGQVVRLICIPKFCETGVAVVLNMRNLEC 428
Query: 1295 HTLSFSTQ 1318
H LSF T+
Sbjct: 429 HALSFGTE 436
>ref|NP_973664.1| DNA polymerase delta subunit 2 [Arabidopsis thaliana]
gi|322510023|sp|O48520.2|DPOD2_ARATH RecName: Full=DNA
polymerase delta small subunit gi|22531160|gb|AAM97084.1|
putative DNA polymerase delta small subunit [Arabidopsis
thaliana] gi|31376377|gb|AAP49515.1| At2g42120
[Arabidopsis thaliana] gi|62320658|dbj|BAD95325.1| DNA
polymerase delta small subunit like protein [Arabidopsis
thaliana] gi|330254978|gb|AEC10072.1| DNA polymerase
delta subunit 2 [Arabidopsis thaliana]
Length = 440
Score = 692 bits (1786), Expect = 0.0
Identities = 327/431 (75%), Positives = 381/431 (88%)
Frame = +2
Query: 29 EILERKQSLYRSLDEIFEIQKDKYTGQQYSQIYFARLHVIRNLLYSLANTWKPHLPICTI 208
+I ERKQS Y SLDE FEIQK+ Y GQQYSQIYFARLH++R LLYSLA TWK HLP+C +
Sbjct: 7 KIHERKQSDYNSLDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKSHLPVCKV 66
Query: 209 LGLEKGKECIVVGTLYKHMKLKPCILNDYSKERSVLPIVKPHNFMHPDDRLILEDESGRV 388
LGLEKGKECI+VGTL+KHMKLKPC+L++YSKERSV P+VKPHNFMHPDD LILEDESGRV
Sbjct: 67 LGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDESGRV 126
Query: 389 KLGGTMLSPSFFVTGVVVALHGSETSAGEFVVQDILEAGLPPQIELPLDSGEDKYVVFVS 568
KL G+ LSP+ +VTGVVVALHG ET+AGEF V+D+LEAGLPPQIE P+D EDKYVV +S
Sbjct: 127 KLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYVVLLS 186
Query: 569 GLSVGNDMSNPLEFQLLVDHITGHLGDDKEQLIASQIVRVVIAGNSVEVQHGLLNGKTLA 748
GL +G+ +NPL+FQLLVDHITGHLGD++EQ +A+QIV VVIAGNS E L+NG+ LA
Sbjct: 187 GLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKLINGQNLA 246
Query: 749 AKEQSRLSEPVKELDILLTQLAVAVPLDIMPGLNDPANFALPQQPLHRCLFRGASAYNTF 928
+K+QS L EP+KELDI+L+Q+A V +DIMPG NDPANFALPQQPL+RCLF G+S YNTF
Sbjct: 247 SKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNTF 306
Query: 929 QSCTNPHLFEIDNIRFLGTSGQNIDDLDKYAEAKDRLDFMERTLMWRHIAPTTPNTLGCY 1108
+SCTNPH F++DNIRFLGTSGQNIDDL KY+EAK +LDF+ERTL WRH+APT PNTLGCY
Sbjct: 307 RSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNTLGCY 366
Query: 1109 PFTDRDPFLIESCPNVYFVGNQNKYETRLAKGSEGQLVRLICIPKFSESSVAVMLNLRNL 1288
PFTDRDPFLIE+CP+VYFVGNQ+KY+ RL KGSEGQLVRLICIPKF E+ +AV +NLRNL
Sbjct: 367 PFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVNLRNL 426
Query: 1289 ECHTLSFSTQM 1321
ECHTLSFSTQ+
Sbjct: 427 ECHTLSFSTQI 437
>ref|NP_181742.2| DNA polymerase delta subunit 2 [Arabidopsis thaliana]
gi|330254979|gb|AEC10073.1| DNA polymerase delta subunit
2 [Arabidopsis thaliana]
Length = 441
Score = 687 bits (1774), Expect = 0.0
Identities = 327/432 (75%), Positives = 381/432 (88%), Gaps = 1/432 (0%)
Frame = +2
Query: 29 EILERKQSLYRSL-DEIFEIQKDKYTGQQYSQIYFARLHVIRNLLYSLANTWKPHLPICT 205
+I ERKQS Y SL DE FEIQK+ Y GQQYSQIYFARLH++R LLYSLA TWK HLP+C
Sbjct: 7 KIHERKQSDYNSLQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKSHLPVCK 66
Query: 206 ILGLEKGKECIVVGTLYKHMKLKPCILNDYSKERSVLPIVKPHNFMHPDDRLILEDESGR 385
+LGLEKGKECI+VGTL+KHMKLKPC+L++YSKERSV P+VKPHNFMHPDD LILEDESGR
Sbjct: 67 VLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDESGR 126
Query: 386 VKLGGTMLSPSFFVTGVVVALHGSETSAGEFVVQDILEAGLPPQIELPLDSGEDKYVVFV 565
VKL G+ LSP+ +VTGVVVALHG ET+AGEF V+D+LEAGLPPQIE P+D EDKYVV +
Sbjct: 127 VKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYVVLL 186
Query: 566 SGLSVGNDMSNPLEFQLLVDHITGHLGDDKEQLIASQIVRVVIAGNSVEVQHGLLNGKTL 745
SGL +G+ +NPL+FQLLVDHITGHLGD++EQ +A+QIV VVIAGNS E L+NG+ L
Sbjct: 187 SGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKLINGQNL 246
Query: 746 AAKEQSRLSEPVKELDILLTQLAVAVPLDIMPGLNDPANFALPQQPLHRCLFRGASAYNT 925
A+K+QS L EP+KELDI+L+Q+A V +DIMPG NDPANFALPQQPL+RCLF G+S YNT
Sbjct: 247 ASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNT 306
Query: 926 FQSCTNPHLFEIDNIRFLGTSGQNIDDLDKYAEAKDRLDFMERTLMWRHIAPTTPNTLGC 1105
F+SCTNPH F++DNIRFLGTSGQNIDDL KY+EAK +LDF+ERTL WRH+APT PNTLGC
Sbjct: 307 FRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNTLGC 366
Query: 1106 YPFTDRDPFLIESCPNVYFVGNQNKYETRLAKGSEGQLVRLICIPKFSESSVAVMLNLRN 1285
YPFTDRDPFLIE+CP+VYFVGNQ+KY+ RL KGSEGQLVRLICIPKF E+ +AV +NLRN
Sbjct: 367 YPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVNLRN 426
Query: 1286 LECHTLSFSTQM 1321
LECHTLSFSTQ+
Sbjct: 427 LECHTLSFSTQI 438
>ref|XP_003521214.1| PREDICTED: DNA polymerase delta small subunit-like [Glycine max]
Length = 433
Score = 687 bits (1772), Expect = 0.0
Identities = 319/428 (74%), Positives = 380/428 (88%)
Frame = +2
Query: 35 LERKQSLYRSLDEIFEIQKDKYTGQQYSQIYFARLHVIRNLLYSLANTWKPHLPICTILG 214
+ER Q Y SLDE FEI K+ Y GQQYSQIYFARLH++R LLYSL WKP+ P+CT+LG
Sbjct: 3 MERVQCAYASLDEAFEIGKEAYQGQQYSQIYFARLHLMRTLLYSLVPHWKPNFPVCTVLG 62
Query: 215 LEKGKECIVVGTLYKHMKLKPCILNDYSKERSVLPIVKPHNFMHPDDRLILEDESGRVKL 394
LE+GKEC++VGTLYKHMKLKPCIL++YSKERSV+P+VKPHNF+HPDD L+LEDESGRVKL
Sbjct: 63 LEEGKECVIVGTLYKHMKLKPCILDEYSKERSVVPLVKPHNFIHPDDHLVLEDESGRVKL 122
Query: 395 GGTMLSPSFFVTGVVVALHGSETSAGEFVVQDILEAGLPPQIELPLDSGEDKYVVFVSGL 574
G+++ PS +VTG+VVAL G ET AG+F+VQD+L+AGLPPQIE PL EDKYVV VSGL
Sbjct: 123 SGSIILPSEYVTGIVVALLGKETGAGDFLVQDVLDAGLPPQIEFPLKPREDKYVVLVSGL 182
Query: 575 SVGNDMSNPLEFQLLVDHITGHLGDDKEQLIASQIVRVVIAGNSVEVQHGLLNGKTLAAK 754
SVG+ SNPL+FQLL+DHITGHLGD+KEQ IASQIVRVV AGN VE+ LLNG+ LA+K
Sbjct: 183 SVGSSSSNPLQFQLLIDHITGHLGDEKEQSIASQIVRVVFAGNLVEIPRRLLNGQNLASK 242
Query: 755 EQSRLSEPVKELDILLTQLAVAVPLDIMPGLNDPANFALPQQPLHRCLFRGASAYNTFQS 934
+ SR++EP+KELDILL+Q+A +PLDIMPG +DPANF+LPQQ LHRCLF G+SAYNTF+S
Sbjct: 243 DLSRMAEPIKELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHRCLFPGSSAYNTFRS 302
Query: 935 CTNPHLFEIDNIRFLGTSGQNIDDLDKYAEAKDRLDFMERTLMWRHIAPTTPNTLGCYPF 1114
CTNPH FE+DN+RFLGTSGQN+DDL+KY+EAKD+L+FMERTL WRH+APT PNTLGCYP+
Sbjct: 303 CTNPHCFEVDNVRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPY 362
Query: 1115 TDRDPFLIESCPNVYFVGNQNKYETRLAKGSEGQLVRLICIPKFSESSVAVMLNLRNLEC 1294
TD+DPF IESCP+VYFVGNQ+K+ETR+ KGSEGQLVRLIC+PKFSE+ VAVMLNLR+L+C
Sbjct: 363 TDKDPFFIESCPHVYFVGNQDKFETRVIKGSEGQLVRLICVPKFSETGVAVMLNLRDLDC 422
Query: 1295 HTLSFSTQ 1318
H LSF TQ
Sbjct: 423 HALSFGTQ 430