BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014444
         (839 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK46555.1| unknown [Lotus japonicus]                              218   1e-54
ref|XP_003534400.1| PREDICTED: DNA-directed RNA polymerase II su...   216   5e-54
ref|NP_001240124.1| uncharacterized protein LOC100784219 [Glycin...   216   7e-54
ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II su...   214   2e-53
ref|XP_004149719.1| PREDICTED: DNA-directed RNA polymerase II su...   213   6e-53

>gb|AFK46555.1| unknown [Lotus japonicus]
          Length = 116

 Score =  218 bits (555), Expect = 1e-54
 Identities = 104/116 (89%), Positives = 111/116 (95%)
 Frame = -3

Query: 756 MNAPDRYERFVVPDGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDPNVLFAG 577
           MNAPDRYERFVVP+GTKKVSYERDTKIINAASFT+EREDHTIGNILRMQLHRDPNVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPNVLFAG 60

Query: 576 YKLPHPLQYKIIVRIHTASQSSPMQAYNQAINDLDKELSHLKGVFEEEVLKHSRDF 409
           YKLPHPLQYKIIVRIHTASQSSPMQAYNQ+INDLDKEL HLK  FE ++L+ SRD+
Sbjct: 61  YKLPHPLQYKIIVRIHTASQSSPMQAYNQSINDLDKELDHLKNAFEADMLRFSRDY 116


>ref|XP_003534400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Glycine
           max]
          Length = 116

 Score =  216 bits (550), Expect = 5e-54
 Identities = 103/116 (88%), Positives = 110/116 (94%)
 Frame = -3

Query: 756 MNAPDRYERFVVPDGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDPNVLFAG 577
           MNAPDRYERFVVP+GTKKVSYERDTKIINAASFT+ERE+HTIGNILRMQLHRDPNVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAG 60

Query: 576 YKLPHPLQYKIIVRIHTASQSSPMQAYNQAINDLDKELSHLKGVFEEEVLKHSRDF 409
           YKLPHPLQYKIIVRIHT SQSSPMQAYNQ+INDLD+EL HLK  FE E+LK SRD+
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQSINDLDRELDHLKSAFEAEMLKFSRDY 116


>ref|NP_001240124.1| uncharacterized protein LOC100784219 [Glycine max]
           gi|255626235|gb|ACU13462.1| unknown [Glycine max]
          Length = 116

 Score =  216 bits (549), Expect = 7e-54
 Identities = 102/116 (87%), Positives = 110/116 (94%)
 Frame = -3

Query: 756 MNAPDRYERFVVPDGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDPNVLFAG 577
           MNAPDRYERFVVP+GTKKVSYERDTKIINAASFT+ERE+HTIGNILRMQLHRDPNVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAG 60

Query: 576 YKLPHPLQYKIIVRIHTASQSSPMQAYNQAINDLDKELSHLKGVFEEEVLKHSRDF 409
           YKLPHPLQYKIIVRIHT SQSSPMQAYNQ++NDLD+EL HLK  FE E+LK SRD+
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQSVNDLDRELDHLKSAFEAEMLKFSRDY 116


>ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Vitis
           vinifera] gi|296082163|emb|CBI21168.3| unnamed protein
           product [Vitis vinifera]
          Length = 116

 Score =  214 bits (545), Expect = 2e-53
 Identities = 103/116 (88%), Positives = 109/116 (93%)
 Frame = -3

Query: 756 MNAPDRYERFVVPDGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDPNVLFAG 577
           MNAPDRYERFVVP+GTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRD NVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAG 60

Query: 576 YKLPHPLQYKIIVRIHTASQSSPMQAYNQAINDLDKELSHLKGVFEEEVLKHSRDF 409
           YKLPHPLQYKII+RIHT SQSSPMQAYNQAINDLDKEL +LK  FE E+ KHSR++
Sbjct: 61  YKLPHPLQYKIIIRIHTTSQSSPMQAYNQAINDLDKELDYLKNAFEVELAKHSREY 116


>ref|XP_004149719.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
           [Cucumis sativus] gi|449516703|ref|XP_004165386.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB11-like [Cucumis sativus]
          Length = 116

 Score =  213 bits (541), Expect = 6e-53
 Identities = 103/116 (88%), Positives = 107/116 (92%)
 Frame = -3

Query: 756 MNAPDRYERFVVPDGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDPNVLFAG 577
           MNAPDRYERFVVP+GTKKVSYERDTKIINAASFT+ERE+HTIGNILRMQLHRD NVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 576 YKLPHPLQYKIIVRIHTASQSSPMQAYNQAINDLDKELSHLKGVFEEEVLKHSRDF 409
           YKLPHPLQYKIIVRIHT SQSSPMQAYNQAINDLDKEL HLK  FE E  K SRD+
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116