BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014437
         (1605 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|2...   720   0.0  
ref|XP_002526000.1| cleavage and polyadenylation specificity fac...   716   0.0  
ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation spec...   686   0.0  
ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation spec...   679   0.0  
gb|AFK42005.1| unknown [Medicago truncatula]                          672   0.0  

>ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|222863821|gb|EEF00952.1|
            predicted protein [Populus trichocarpa]
          Length = 639

 Score =  720 bits (1858), Expect = 0.0
 Identities = 348/465 (74%), Positives = 403/465 (86%)
 Frame = +2

Query: 2    HFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSSQNIV 181
            HFHLDH+GALPYFTEVCGY+GPIYMTYPTKALAPLMLED+RKV+VDRRGEEEQF+S +I 
Sbjct: 67   HFHLDHVGALPYFTEVCGYNGPIYMTYPTKALAPLMLEDFRKVLVDRRGEEEQFTSLHIS 126

Query: 182  DCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMTPDRHL 361
             C++KV AVDL+QTV+VDD+L+IR YYAGHV+GAAMFYAKV DSA+VYTGDYNMTPDRHL
Sbjct: 127  QCMEKVIAVDLKQTVQVDDDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186

Query: 362  GAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIPTFALGRAQ 541
            GAA ID+ L LDL+I+ESTYATT+R+SKYAREREFLK VH+CVA GGKVLIPTFALGRAQ
Sbjct: 187  GAAQIDR-LELDLLITESTYATTIRDSKYAREREFLKAVHECVAGGGKVLIPTFALGRAQ 245

Query: 542  ELCILLDDYWERMNLNSIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATRNAFDFKHV 721
            ELCILLDDYWERMNL  +PIYFSAGLT+QAN+YYK+LI WTSQKVK++YATRNAFDFKHV
Sbjct: 246  ELCILLDDYWERMNLK-VPIYFSAGLTIQANLYYKILISWTSQKVKETYATRNAFDFKHV 304

Query: 722  CSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYCVAGTVGHKLMS 901
             +F+RS++N  GPCVLFATPGMISGGFSLEVFKQWAP E+NLITLPGYCVAGTVGHKLMS
Sbjct: 305  HNFDRSLINAPGPCVLFATPGMISGGFSLEVFKQWAPCEMNLITLPGYCVAGTVGHKLMS 364

Query: 902  GKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFLSPKNVILVHGEKPKMAKLK 1081
            GK TKI +DK+TQ+DVRC+IHQLSFSPHTDSKGIMDL KFLSP+NVILVHGEKPKM  LK
Sbjct: 365  GKPTKINLDKDTQIDVRCQIHQLSFSPHTDSKGIMDLTKFLSPRNVILVHGEKPKMVSLK 424

Query: 1082 GKIESELGIKCYDPANNDVVHITSPHYVKIDATKAFIENCINPNAKSFDSKVEGTSDLSS 1261
             +I++EL I CY PAN D VHI S  YVK  A+  FI +C+NPN +      E  SD   
Sbjct: 425  ERIQTELRIPCYLPANCDAVHIPSTIYVKAHASNTFIRSCLNPNFRFLKRSKEDNSDQVL 484

Query: 1262 KGTGSSPVKETYDKRVAEGILVMDKTKRPKAVHQDELLSVLQVKR 1396
            + T  +   +  D+RVAEGIL+M+K K+ + VHQD+LL +L+ K+
Sbjct: 485  RNTNPTAPLQVNDERVAEGILIMEKGKKARVVHQDDLLLMLRQKK 529


>ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
            communis] gi|223534732|gb|EEF36424.1| cleavage and
            polyadenylation specificity factor, putative [Ricinus
            communis]
          Length = 963

 Score =  716 bits (1848), Expect = 0.0
 Identities = 344/465 (73%), Positives = 410/465 (88%)
 Frame = +2

Query: 2    HFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSSQNIV 181
            HFHLDH+GALPYFTEVCGY+GP+YMTYPTKAL+PLMLEDYRKVMVDRRGEEEQF++ +I 
Sbjct: 67   HFHLDHVGALPYFTEVCGYNGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQFTADHIK 126

Query: 182  DCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMTPDRHL 361
             CL KV AVDL+QTV+VD +L+IR YYAGHV+GAAMFYAKV DSA+VYTGDYNMTPDRHL
Sbjct: 127  QCLNKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186

Query: 362  GAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIPTFALGRAQ 541
            GAA ID+ L LDL+I+ESTYATT+R+SKYAREREFLKVVH+CVA GGKVLIPTFALGRAQ
Sbjct: 187  GAAQIDR-LQLDLLITESTYATTIRDSKYAREREFLKVVHKCVAGGGKVLIPTFALGRAQ 245

Query: 542  ELCILLDDYWERMNLNSIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATRNAFDFKHV 721
            ELC+LLDDYWERMNL  +PIYFSAGLT+QANMYYKMLIGWTSQK+K++Y +RNAFDFK+V
Sbjct: 246  ELCLLLDDYWERMNLK-VPIYFSAGLTIQANMYYKMLIGWTSQKIKETYTSRNAFDFKNV 304

Query: 722  CSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYCVAGTVGHKLMS 901
             +F+RS+L+  GPCVLFATPGMISGGFSLEVFK+WAP E+NL+TLPGYCVAGT+GHKLMS
Sbjct: 305  YTFDRSLLDAPGPCVLFATPGMISGGFSLEVFKRWAPCEMNLVTLPGYCVAGTIGHKLMS 364

Query: 902  GKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFLSPKNVILVHGEKPKMAKLK 1081
            GK +KI +DK+TQ+DVRC+IHQLSFSPHTD+KGIMDLVKFLSPK+VILVHGEKPKMA LK
Sbjct: 365  GKPSKINLDKDTQIDVRCQIHQLSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMASLK 424

Query: 1082 GKIESELGIKCYDPANNDVVHITSPHYVKIDATKAFIENCINPNAKSFDSKVEGTSDLSS 1261
             +I+SEL I+CY PAN + + I S  +VK DA++AFI +C++PN +  +  ++ TSDL  
Sbjct: 425  ERIQSELEIQCYVPANCETLCIPSTLFVKADASEAFIRSCLSPNFRFLNKSLKDTSDLVL 484

Query: 1262 KGTGSSPVKETYDKRVAEGILVMDKTKRPKAVHQDELLSVLQVKR 1396
              T ++   E  D+RVAEGILV++K K+ + VHQDELL +L  K+
Sbjct: 485  HSTNATSRLEVSDERVAEGILVVEKNKKARVVHQDELLLMLGAKQ 529


>ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            3-II-like [Cucumis sativus]
          Length = 649

 Score =  686 bits (1771), Expect = 0.0
 Identities = 338/466 (72%), Positives = 396/466 (84%), Gaps = 5/466 (1%)
 Frame = +2

Query: 2    HFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSSQNIV 181
            HFHLDHIGALPYFTEVCGY+GPIYMTYPT ALAP+ LEDYRKVMVDRRGE EQF++ +I+
Sbjct: 67   HFHLDHIGALPYFTEVCGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQFTNDHIM 126

Query: 182  DCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMTPDRHL 361
            +CLKKV  VDL+QT++VD++L+IR YYAGHV+GAAMFYAKV D+A+VYTGDYNMTPDRHL
Sbjct: 127  ECLKKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHL 186

Query: 362  GAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIPTFALGRAQ 541
            GAA ID+ + LDL+I+ESTYATT+R+SKYAREREFLK VH C+A+GGKVLIPTFALGRAQ
Sbjct: 187  GAAQIDR-MQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFALGRAQ 245

Query: 542  ELCILLDDYWERMNLNSIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATRNAFDFKHV 721
            ELC+LLDDYWERMNL   PIY SAGLT+QANMYYKMLI WTSQKVK++Y TRNAFDFK+V
Sbjct: 246  ELCVLLDDYWERMNLK-FPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNV 304

Query: 722  CSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYCVAGTVGHKLMS 901
              F+RSM++  GPCVLFATPGMIS GFSLEVFK+WAPS++NLITLPGYCVAGTVGHKLMS
Sbjct: 305  QKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMS 364

Query: 902  GKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFLSPKNVILVHGEKPKMAKLK 1081
            GK TKI +DK TQ+DV+C++HQL+FSPHTDSKGIMDLVKFLSPK+VILVHGEKPKMA LK
Sbjct: 365  GKPTKIDLDKVTQIDVQCQVHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLK 424

Query: 1082 GKIESELGIKCYDPANNDVVHITSPHYVKIDATKAFIENCINPNAKSFDSKV--EGTSDL 1255
             +I SELGI C+DPANN+ V I+S   VK +A+  FI++C  PN K     +      DL
Sbjct: 425  ERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLIDPDLKDL 484

Query: 1256 SSKGTGSSPV---KETYDKRVAEGILVMDKTKRPKAVHQDELLSVL 1384
            S K   +S +    +  D RV EGILVM+  K+ KA+HQDELL +L
Sbjct: 485  SYKAERTSNMLIPLQVSDDRVNEGILVMENGKKTKALHQDELLLLL 530


>ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            3-II-like [Brachypodium distachyon]
          Length = 553

 Score =  679 bits (1753), Expect = 0.0
 Identities = 333/465 (71%), Positives = 388/465 (83%)
 Frame = +2

Query: 2    HFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSSQNIV 181
            HFHLDHIGALPYFTEVCGY GPIYMTYPTKALAPLMLEDYRKVMVD+RGEEEQ+S ++I+
Sbjct: 71   HFHLDHIGALPYFTEVCGYHGPIYMTYPTKALAPLMLEDYRKVMVDQRGEEEQYSYEDIL 130

Query: 182  DCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMTPDRHL 361
             C+KKV  VDL+QT++V+ +L IR YYAGHV+GAAM YAKV D+A+VYTGDYNMTPDRHL
Sbjct: 131  RCMKKVIPVDLKQTIQVNRDLVIRAYYAGHVLGAAMVYAKVGDAAMVYTGDYNMTPDRHL 190

Query: 362  GAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIPTFALGRAQ 541
            GAA I++ L LDL+I+ESTYA T+R+SK+AREREFLK VH+CV+ GGKVLIPTFALGRAQ
Sbjct: 191  GAAQIER-LKLDLLITESTYAKTIRDSKHAREREFLKAVHKCVSEGGKVLIPTFALGRAQ 249

Query: 542  ELCILLDDYWERMNLNSIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATRNAFDFKHV 721
            ELCILLDDYWERMNL  IPIYFSAGLT+QANMYYKMLIGWTSQK+KDSY  +N FDFKHV
Sbjct: 250  ELCILLDDYWERMNLK-IPIYFSAGLTIQANMYYKMLIGWTSQKIKDSYTVQNPFDFKHV 308

Query: 722  CSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYCVAGTVGHKLMS 901
            C FERS +ND GPCVLFATPGMISGGFSLEVFK+WA S+ NL+TLPGYCVAGT+GHKLMS
Sbjct: 309  CHFERSFINDPGPCVLFATPGMISGGFSLEVFKRWATSDKNLVTLPGYCVAGTIGHKLMS 368

Query: 902  GKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFLSPKNVILVHGEKPKMAKLK 1081
            GK T+I +DK+T VDVRC+IHQLSFSPHTDSKGIMDL +FLSP +VILVHGEKP+MA LK
Sbjct: 369  GKPTRIDIDKDTHVDVRCQIHQLSFSPHTDSKGIMDLTEFLSPNHVILVHGEKPQMAFLK 428

Query: 1082 GKIESELGIKCYDPANNDVVHITSPHYVKIDATKAFIENCINPNAKSFDSKVEGTSDLSS 1261
             +IESELG+ CY PANN+ V I +   +KI AT+ FI NC    A+    K +  S +  
Sbjct: 429  DRIESELGMSCYYPANNETVSIPTTQNMKISATEKFITNCAALQARDSLQKSDLISSIHL 488

Query: 1262 KGTGSSPVKETYDKRVAEGILVMDKTKRPKAVHQDELLSVLQVKR 1396
             G          D+R+AEGIL+M+K+K PK + +DE L +L   R
Sbjct: 489  SGVNE-------DERLAEGILLMEKSKAPKILCEDEFLKLLGTDR 526


>gb|AFK42005.1| unknown [Medicago truncatula]
          Length = 534

 Score =  672 bits (1734), Expect = 0.0
 Identities = 325/467 (69%), Positives = 389/467 (83%), Gaps = 2/467 (0%)
 Frame = +2

Query: 2    HFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSSQNIV 181
            HFHLDH+GAL YFTEVCGY GP+YMTYP KAL+PLMLEDYRKVMVDRRGEEEQF+S +I 
Sbjct: 67   HFHLDHVGALAYFTEVCGYSGPVYMTYPIKALSPLMLEDYRKVMVDRRGEEEQFTSDHIA 126

Query: 182  DCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMTPDRHL 361
            +C+KKV AVDL+QTV+VD++L+IR YYAGHVIGAAMFY KV D+ +VYTGDYNMTPDRHL
Sbjct: 127  ECMKKVIAVDLKQTVQVDEDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNMTPDRHL 186

Query: 362  GAASIDKFLHLDLVISESTYATTVRESKYAREREFLKVVHQCVANGGKVLIPTFALGRAQ 541
            GAA ID+ L LDL+I+ESTYATT+R+SKYAREREFLK VH+CV+ GGKVLIPTFALGRAQ
Sbjct: 187  GAAQIDR-LRLDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQ 245

Query: 542  ELCILLDDYWERMNLNSIPIYFSAGLTLQANMYYKMLIGWTSQKVKDSYATRNAFDFKHV 721
            EL ILLDDYWERMNL  +PIYFS+GLT+QAN Y+KMLIGWTSQK+KD+Y+T NAFDFK+V
Sbjct: 246  ELRILLDDYWERMNLK-VPIYFSSGLTIQANTYHKMLIGWTSQKIKDTYSTHNAFDFKNV 304

Query: 722  CSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYCVAGTVGHKLMS 901
              FERSML+  GPCVLFATPGM+ GGFSLEVFK WAPSE NL+ LPGYC+AGTVGH+L S
Sbjct: 305  HKFERSMLDAPGPCVLFATPGMLIGGFSLEVFKHWAPSEKNLVALPGYCMAGTVGHRLTS 364

Query: 902  GKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFLSPKNVILVHGEKPKMAKLK 1081
            GK TK+  D +TQ+DVRC+IHQL+FS HTDSKGIMDLVKFLSPK+V+LVHG+KPKM  LK
Sbjct: 365  GKPTKVDTDPDTQIDVRCQIHQLAFSAHTDSKGIMDLVKFLSPKHVMLVHGDKPKMVSLK 424

Query: 1082 GKIESELGIKCYDPANNDVVHITSPHYVKIDATKAFIENCINPNAKSFDSKVEGTSDLSS 1261
             +I+SELGI C  PANN++V I+S  YV  +A+  F +NC+NPN K        T + + 
Sbjct: 425  ERIDSELGIPCSHPANNEIVTISSTQYVNAEASDTFTKNCLNPNFKFQKCSSMDTCNSTL 484

Query: 1262 KGTGSSPVKETYDKRVAEGILVMD--KTKRPKAVHQDELLSVLQVKR 1396
                 +P  +  D+RVA+G+LVM+    K+ K VH+DE+L +L  K+
Sbjct: 485  IDRNLTPELQVEDERVADGVLVMENNNNKKAKIVHEDEILLMLDEKK 531