BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014436
         (573 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, c...   112   3e-23
ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arab...   111   7e-23
ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloropl...   111   7e-23
ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabi...   110   2e-22
ref|XP_003577468.1| PREDICTED: 50S ribosomal protein 6, chloropl...    99   5e-19

>sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, chloroplastic; AltName:
           Full=CL25; AltName: Full=Plastid-specific 50S ribosomal
           protein 6; Short=PSRP-6; Flags: Precursor
           gi|7578927|gb|AAF64189.1|AF245292_1 plastid-specific
           ribosomal protein 6 precursor [Spinacia oleracea]
          Length = 116

 Score =  112 bits (281), Expect = 3e-23
 Identities = 57/105 (54%), Positives = 71/105 (67%), Gaps = 13/105 (12%)
 Frame = -3

Query: 517 MSISALFGTRVVLKPNLAQFSS----------STLGERGAATAVIECSSRPQKKGTKHHM 368
           MS+SA+FG RVV  P++ + SS          ST G  G     IECSSRPQKKGT HHM
Sbjct: 1   MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHM 60

Query: 367 KTRPKKTAKWELKRRPTVYAPLPPLPSEWSFVT---DETNTEEAT 242
           KTRPKKTA+W++KR P VY PLPPLP+EW+ V+   DE ++  +T
Sbjct: 61  KTRPKKTARWDIKRGPAVYPPLPPLPAEWTIVSSAVDEADSSSST 105


>ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arabidopsis lyrata subsp.
           lyrata] gi|297317621|gb|EFH48043.1| hypothetical protein
           ARALYDRAFT_488653 [Arabidopsis lyrata subsp. lyrata]
          Length = 108

 Score =  111 bits (278), Expect = 7e-23
 Identities = 57/104 (54%), Positives = 68/104 (65%), Gaps = 3/104 (2%)
 Frame = -3

Query: 517 MSISALFGTRVVL---KPNLAQFSSSTLGERGAATAVIECSSRPQKKGTKHHMKTRPKKT 347
           MS+SA+FGT +V     P L QF   TLG  G    VIECSSRPQKK T HH K+RPKKT
Sbjct: 1   MSVSAIFGTGIVTVAASPVLRQFQVPTLGNGGGLGMVIECSSRPQKKSTAHHRKSRPKKT 60

Query: 346 AKWELKRRPTVYAPLPPLPSEWSFVTDETNTEEATVQVENNDNV 215
             W++KR+PTVYAPLPPLP+EW+  T  ++   AT      D V
Sbjct: 61  QPWDIKRKPTVYAPLPPLPAEWTPFTLASDDGGATAAAPAGDLV 104


>ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloroplastic [Vitis vinifera]
          Length = 108

 Score =  111 bits (278), Expect = 7e-23
 Identities = 55/95 (57%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
 Frame = -3

Query: 517 MSISALFGTRVVLK-PNLAQFSSSTLGER-GAATAVIECSSRPQKKGTKHHMKTRPKKTA 344
           MSISA+FG  V  +    A F +     R G   AVIECSSRPQKKGT HHMKTRP+KT 
Sbjct: 1   MSISAIFGAAVPNRCSTAASFGARKAAPRLGGGAAVIECSSRPQKKGTSHHMKTRPRKTQ 60

Query: 343 KWELKRRPTVYAPLPPLPSEWSFVTDETNTEEATV 239
            W++KRRPTVYAPLPPLP EW+ V+ + +  +A V
Sbjct: 61  PWDIKRRPTVYAPLPPLPPEWTVVSSDADASDAAV 95


>ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabidopsis thaliana]
           gi|75171293|sp|Q9FKP0.1|PSRP6_ARATH RecName: Full=50S
           ribosomal protein 6, chloroplastic; AltName: Full=CL25;
           AltName: Full=Plastid-specific 50S ribosomal protein 6;
           Short=PSRP-6; Flags: Precursor
           gi|10177888|dbj|BAB11220.1| unnamed protein product
           [Arabidopsis thaliana] gi|14517428|gb|AAK62604.1|
           AT5g17870/MPI7_10 [Arabidopsis thaliana]
           gi|20147339|gb|AAM10383.1| AT5g17870/MPI7_10
           [Arabidopsis thaliana] gi|21554906|gb|AAM63726.1|
           plastid-specific ribosomal protein 6 precursor
           (Psrp-6)-like [Arabidopsis thaliana]
           gi|332005097|gb|AED92480.1| plastid-specific 50S
           ribosomal protein 6 [Arabidopsis thaliana]
          Length = 106

 Score =  110 bits (275), Expect = 2e-22
 Identities = 53/83 (63%), Positives = 60/83 (72%), Gaps = 3/83 (3%)
 Frame = -3

Query: 517 MSISALFGTRVVL---KPNLAQFSSSTLGERGAATAVIECSSRPQKKGTKHHMKTRPKKT 347
           MS+SA+FGT +V     P L QF    LG  G    VIECSSRPQKK T HH KTRPKKT
Sbjct: 1   MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKT 60

Query: 346 AKWELKRRPTVYAPLPPLPSEWS 278
             W++KR+PTVYAPLPPLP+EWS
Sbjct: 61  QPWDIKRKPTVYAPLPPLPAEWS 83


>ref|XP_003577468.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like
           [Brachypodium distachyon]
          Length = 118

 Score = 99.0 bits (245), Expect = 5e-19
 Identities = 46/84 (54%), Positives = 56/84 (66%)
 Frame = -3

Query: 475 PNLAQFSSSTLGERGAATAVIECSSRPQKKGTKHHMKTRPKKTAKWELKRRPTVYAPLPP 296
           P  A+ S+   G  G     +ECSSRPQKKGTKHHMKTRPKKT +W++KRRPT Y PLP 
Sbjct: 18  PRTARPSAGFFGVGGGCALTVECSSRPQKKGTKHHMKTRPKKTQRWDIKRRPTQYPPLPA 77

Query: 295 LPSEWSFVTDETNTEEATVQVENN 224
           LP +W+ V     TE+A  Q E +
Sbjct: 78  LPEDWTLVA-AGETEDAAAQDEES 100