BLASTX nr result
ID: Coptis24_contig00014436
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00014436 (573 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, c... 112 3e-23 ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arab... 111 7e-23 ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloropl... 111 7e-23 ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabi... 110 2e-22 ref|XP_003577468.1| PREDICTED: 50S ribosomal protein 6, chloropl... 99 5e-19 >sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, chloroplastic; AltName: Full=CL25; AltName: Full=Plastid-specific 50S ribosomal protein 6; Short=PSRP-6; Flags: Precursor gi|7578927|gb|AAF64189.1|AF245292_1 plastid-specific ribosomal protein 6 precursor [Spinacia oleracea] Length = 116 Score = 112 bits (281), Expect = 3e-23 Identities = 57/105 (54%), Positives = 71/105 (67%), Gaps = 13/105 (12%) Frame = -3 Query: 517 MSISALFGTRVVLKPNLAQFSS----------STLGERGAATAVIECSSRPQKKGTKHHM 368 MS+SA+FG RVV P++ + SS ST G G IECSSRPQKKGT HHM Sbjct: 1 MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHM 60 Query: 367 KTRPKKTAKWELKRRPTVYAPLPPLPSEWSFVT---DETNTEEAT 242 KTRPKKTA+W++KR P VY PLPPLP+EW+ V+ DE ++ +T Sbjct: 61 KTRPKKTARWDIKRGPAVYPPLPPLPAEWTIVSSAVDEADSSSST 105 >ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arabidopsis lyrata subsp. lyrata] gi|297317621|gb|EFH48043.1| hypothetical protein ARALYDRAFT_488653 [Arabidopsis lyrata subsp. lyrata] Length = 108 Score = 111 bits (278), Expect = 7e-23 Identities = 57/104 (54%), Positives = 68/104 (65%), Gaps = 3/104 (2%) Frame = -3 Query: 517 MSISALFGTRVVL---KPNLAQFSSSTLGERGAATAVIECSSRPQKKGTKHHMKTRPKKT 347 MS+SA+FGT +V P L QF TLG G VIECSSRPQKK T HH K+RPKKT Sbjct: 1 MSVSAIFGTGIVTVAASPVLRQFQVPTLGNGGGLGMVIECSSRPQKKSTAHHRKSRPKKT 60 Query: 346 AKWELKRRPTVYAPLPPLPSEWSFVTDETNTEEATVQVENNDNV 215 W++KR+PTVYAPLPPLP+EW+ T ++ AT D V Sbjct: 61 QPWDIKRKPTVYAPLPPLPAEWTPFTLASDDGGATAAAPAGDLV 104 >ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloroplastic [Vitis vinifera] Length = 108 Score = 111 bits (278), Expect = 7e-23 Identities = 55/95 (57%), Positives = 66/95 (69%), Gaps = 2/95 (2%) Frame = -3 Query: 517 MSISALFGTRVVLK-PNLAQFSSSTLGER-GAATAVIECSSRPQKKGTKHHMKTRPKKTA 344 MSISA+FG V + A F + R G AVIECSSRPQKKGT HHMKTRP+KT Sbjct: 1 MSISAIFGAAVPNRCSTAASFGARKAAPRLGGGAAVIECSSRPQKKGTSHHMKTRPRKTQ 60 Query: 343 KWELKRRPTVYAPLPPLPSEWSFVTDETNTEEATV 239 W++KRRPTVYAPLPPLP EW+ V+ + + +A V Sbjct: 61 PWDIKRRPTVYAPLPPLPPEWTVVSSDADASDAAV 95 >ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabidopsis thaliana] gi|75171293|sp|Q9FKP0.1|PSRP6_ARATH RecName: Full=50S ribosomal protein 6, chloroplastic; AltName: Full=CL25; AltName: Full=Plastid-specific 50S ribosomal protein 6; Short=PSRP-6; Flags: Precursor gi|10177888|dbj|BAB11220.1| unnamed protein product [Arabidopsis thaliana] gi|14517428|gb|AAK62604.1| AT5g17870/MPI7_10 [Arabidopsis thaliana] gi|20147339|gb|AAM10383.1| AT5g17870/MPI7_10 [Arabidopsis thaliana] gi|21554906|gb|AAM63726.1| plastid-specific ribosomal protein 6 precursor (Psrp-6)-like [Arabidopsis thaliana] gi|332005097|gb|AED92480.1| plastid-specific 50S ribosomal protein 6 [Arabidopsis thaliana] Length = 106 Score = 110 bits (275), Expect = 2e-22 Identities = 53/83 (63%), Positives = 60/83 (72%), Gaps = 3/83 (3%) Frame = -3 Query: 517 MSISALFGTRVVL---KPNLAQFSSSTLGERGAATAVIECSSRPQKKGTKHHMKTRPKKT 347 MS+SA+FGT +V P L QF LG G VIECSSRPQKK T HH KTRPKKT Sbjct: 1 MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKT 60 Query: 346 AKWELKRRPTVYAPLPPLPSEWS 278 W++KR+PTVYAPLPPLP+EWS Sbjct: 61 QPWDIKRKPTVYAPLPPLPAEWS 83 >ref|XP_003577468.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Brachypodium distachyon] Length = 118 Score = 99.0 bits (245), Expect = 5e-19 Identities = 46/84 (54%), Positives = 56/84 (66%) Frame = -3 Query: 475 PNLAQFSSSTLGERGAATAVIECSSRPQKKGTKHHMKTRPKKTAKWELKRRPTVYAPLPP 296 P A+ S+ G G +ECSSRPQKKGTKHHMKTRPKKT +W++KRRPT Y PLP Sbjct: 18 PRTARPSAGFFGVGGGCALTVECSSRPQKKGTKHHMKTRPKKTQRWDIKRRPTQYPPLPA 77 Query: 295 LPSEWSFVTDETNTEEATVQVENN 224 LP +W+ V TE+A Q E + Sbjct: 78 LPEDWTLVA-AGETEDAAAQDEES 100