BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014375
         (630 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520128.1| conserved hypothetical protein [Ricinus comm...   108   5e-47
sp|Q9LL85.1|WHY1_SOLTU RecName: Full=Single-stranded DNA-bindig ...   106   1e-45
ref|XP_002277278.1| PREDICTED: uncharacterized protein LOC100253...   106   2e-44
ref|XP_002311601.1| predicted protein [Populus trichocarpa] gi|1...   106   3e-44
gb|ADL36850.1| WHY domain class transcription factor [Malus x do...   105   1e-43

>ref|XP_002520128.1| conserved hypothetical protein [Ricinus communis]
           gi|223540620|gb|EEF42183.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 271

 Score =  108 bits (270), Expect(2) = 5e-47
 Identities = 49/56 (87%), Positives = 54/56 (96%)
 Frame = -1

Query: 168 SGVRQYDWSRKQVFSLSVTEIGTLMGLGAKDSCEFFHDPNKGKSDEGKVRKVLKAE 1
           +GVRQYDWSRKQVFSLSVTEIGT++ LGA+DSCEFFHDPNKGKSDEGK+RKVLK E
Sbjct: 135 AGVRQYDWSRKQVFSLSVTEIGTIISLGARDSCEFFHDPNKGKSDEGKIRKVLKVE 190



 Score =  105 bits (262), Expect(2) = 5e-47
 Identities = 56/99 (56%), Positives = 75/99 (75%), Gaps = 6/99 (6%)
 Frame = -3

Query: 547 PFHLSSNNNRRNLTVKSRRSEYFEPQH-KFN-----TTNSFSPQQSLGALPRVFVGHSIY 386
           P  LS+N NR    VK R+SE+++ Q  K+N     + +S    QS  A+PRV+VGHSIY
Sbjct: 40  PRRLSTNTNR---AVKCRQSEFYDQQQQKYNPSRPSSNDSSFASQSPAAVPRVYVGHSIY 96

Query: 385 KGKAALTIEPKAPDFSPLDSGAYKLSKEGFVLLQFAPAS 269
           KGKAALT+EP+AP+F+ LDSGA+K+++EGFVLLQFAPA+
Sbjct: 97  KGKAALTVEPRAPEFAALDSGAFKVAREGFVLLQFAPAA 135


>sp|Q9LL85.1|WHY1_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY1,
           chloroplastic; AltName: Full=DNA-binding protein p24;
           AltName: Full=PR-10a binding factor 2; Short=PBF-2;
           AltName: Full=Protein WHIRLY 1; Short=StWhy1; Flags:
           Precursor gi|9651810|gb|AAF91282.1|AF233342_1
           DNA-binding protein p24 [Solanum tuberosum]
          Length = 274

 Score =  106 bits (264), Expect(2) = 1e-45
 Identities = 48/56 (85%), Positives = 54/56 (96%)
 Frame = -1

Query: 168 SGVRQYDWSRKQVFSLSVTEIGTLMGLGAKDSCEFFHDPNKGKSDEGKVRKVLKAE 1
           +GVRQYDWSRKQVFSLSVTEIG+++ LGAKDSCEFFHDPNKG+SDEG+VRKVLK E
Sbjct: 138 AGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRVRKVLKVE 193



 Score =  102 bits (255), Expect(2) = 1e-45
 Identities = 52/84 (61%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
 Frame = -3

Query: 517 RNLTVKSRRSEYFEPQHKFNTTNSFSPQQSLGA-LPRVFVGHSIYKGKAALTIEPKAPDF 341
           RNL++  R S+YFEPQ +         QQ  GA  P+VFVG+SIYKGKAALT+EP++P+F
Sbjct: 59  RNLSLTCRHSDYFEPQQQ----QQQQQQQPQGASTPKVFVGYSIYKGKAALTVEPRSPEF 114

Query: 340 SPLDSGAYKLSKEGFVLLQFAPAS 269
           SPLDSGA+KLS+EG V+LQFAPA+
Sbjct: 115 SPLDSGAFKLSREGMVMLQFAPAA 138


>ref|XP_002277278.1| PREDICTED: uncharacterized protein LOC100253653 [Vitis vinifera]
           gi|296086421|emb|CBI32010.3| unnamed protein product
           [Vitis vinifera]
          Length = 268

 Score =  106 bits (264), Expect(2) = 2e-44
 Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 4/99 (4%)
 Frame = -3

Query: 553 KNPFHLSSNNN-RRNLTVKSRRSEYFEPQHKFNTTNSFSPQQSL--GAL-PRVFVGHSIY 386
           + P  LS+  + R+  +++ R+S+YF+ Q   N T    P  S   GAL PRVFVGHSIY
Sbjct: 38  RTPLLLSTTRHFRKKRSLQCRQSDYFQQQ---NITRRQPPNDSSFGGALQPRVFVGHSIY 94

Query: 385 KGKAALTIEPKAPDFSPLDSGAYKLSKEGFVLLQFAPAS 269
           KGKAALT+EPKAP+F+PLDSGA+K+SKEGFVLLQFAPA+
Sbjct: 95  KGKAALTVEPKAPEFTPLDSGAFKVSKEGFVLLQFAPAA 133



 Score = 99.0 bits (245), Expect(2) = 2e-44
 Identities = 45/56 (80%), Positives = 52/56 (92%)
 Frame = -1

Query: 168 SGVRQYDWSRKQVFSLSVTEIGTLMGLGAKDSCEFFHDPNKGKSDEGKVRKVLKAE 1
           +GVRQYDW RKQVFSLSVTEIG+L+ LGA++SCEFFHDP KG+S+EGKVRKVLK E
Sbjct: 133 AGVRQYDWGRKQVFSLSVTEIGSLISLGARESCEFFHDPFKGRSEEGKVRKVLKVE 188


>ref|XP_002311601.1| predicted protein [Populus trichocarpa] gi|118485247|gb|ABK94483.1|
           unknown [Populus trichocarpa]
           gi|222851421|gb|EEE88968.1| predicted protein [Populus
           trichocarpa]
          Length = 265

 Score =  106 bits (264), Expect(2) = 3e-44
 Identities = 62/119 (52%), Positives = 80/119 (67%), Gaps = 13/119 (10%)
 Frame = -3

Query: 586 SSLPFHPQLILKNPFHLSSN-----NNRRNLTVKSR----RSEYFEPQHKFNTTNSFSPQ 434
           SS P +P+L L     L S      N++ + T K +    + +Y++ QHK  TT+S S  
Sbjct: 11  SSSPQNPKLWLPQYNSLCSTKSISLNSKTSSTEKKKTLGVKCQYYDQQHKTFTTSSRSSP 70

Query: 433 QSLGAL----PRVFVGHSIYKGKAALTIEPKAPDFSPLDSGAYKLSKEGFVLLQFAPAS 269
            S   +    P+VFVGHSIYKGKAALT+EP++P+FSPLDSGAYKL KEGFVLLQFAPA+
Sbjct: 71  SSAPPVGESPPKVFVGHSIYKGKAALTVEPRSPEFSPLDSGAYKLVKEGFVLLQFAPAA 129



 Score = 98.2 bits (243), Expect(2) = 3e-44
 Identities = 46/56 (82%), Positives = 50/56 (89%)
 Frame = -1

Query: 168 SGVRQYDWSRKQVFSLSVTEIGTLMGLGAKDSCEFFHDPNKGKSDEGKVRKVLKAE 1
           + VRQYDW+RKQVFSLSVTEIG L+ L AK SCEFFHDPNKGKSDEGKVRK+LK E
Sbjct: 129 ASVRQYDWTRKQVFSLSVTEIGHLVSLDAKGSCEFFHDPNKGKSDEGKVRKLLKVE 184


>gb|ADL36850.1| WHY domain class transcription factor [Malus x domestica]
          Length = 276

 Score =  105 bits (263), Expect(2) = 1e-43
 Identities = 52/92 (56%), Positives = 67/92 (72%), Gaps = 7/92 (7%)
 Frame = -3

Query: 523 NRRNLTVKSRRSEYFEPQHKFNTTNSFSPQQS-------LGALPRVFVGHSIYKGKAALT 365
           +R+ L++K R+SEYF+ Q      +   P  +        G  PR +VGHSIYKGKAALT
Sbjct: 49  SRKRLSLKCRQSEYFDQQRTSTAASPNKPSPAPPTPAGATGMAPRFYVGHSIYKGKAALT 108

Query: 364 IEPKAPDFSPLDSGAYKLSKEGFVLLQFAPAS 269
           +EPKAP+F+PLDSGA+KLS+EGFVLLQFAPA+
Sbjct: 109 VEPKAPEFTPLDSGAFKLSREGFVLLQFAPAA 140



 Score = 96.7 bits (239), Expect(2) = 1e-43
 Identities = 46/56 (82%), Positives = 51/56 (91%)
 Frame = -1

Query: 168 SGVRQYDWSRKQVFSLSVTEIGTLMGLGAKDSCEFFHDPNKGKSDEGKVRKVLKAE 1
           +GVR YDWSRKQVFSLSVTEIG+L+ LG+K+S EFFHDP KGKSDEGKVRKVLK E
Sbjct: 140 AGVRVYDWSRKQVFSLSVTEIGSLVSLGSKESLEFFHDPFKGKSDEGKVRKVLKVE 195