BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014358
         (329 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi...    74   9e-12
emb|CBI36131.3| unnamed protein product [Vitis vinifera]               74   9e-12
ref|XP_002516017.1| pentatricopeptide repeat-containing protein,...    73   3e-11
ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi...    70   1e-10
ref|XP_003594259.1| Thymidine kinase [Medicago truncatula] gi|35...    69   3e-10

>ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 36/103 (34%), Positives = 57/103 (55%)
 Frame = -2

Query: 328 HARLIQLGMYTDVYLSSKLLYFYCCNGYLGSTRLIFNTTPISCLPQFFWNTVIRAYVGNS 149
           HA++   G   D  +++KL+  YC    L S RL+F+  P   +  F WN +IR Y  N 
Sbjct: 98  HAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNI--FLWNVLIRGYAWNG 155

Query: 148 KFIGGVRLFLEMWGLSFLPNEFSYPFVFKFCSVLGLVEPGRMI 20
            +   V+L+ +M+    +P+ F++PFV K C+ L  +E GR I
Sbjct: 156 PYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREI 198


>emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 36/103 (34%), Positives = 57/103 (55%)
 Frame = -2

Query: 328 HARLIQLGMYTDVYLSSKLLYFYCCNGYLGSTRLIFNTTPISCLPQFFWNTVIRAYVGNS 149
           HA++   G   D  +++KL+  YC    L S RL+F+  P   +  F WN +IR Y  N 
Sbjct: 98  HAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNI--FLWNVLIRGYAWNG 155

Query: 148 KFIGGVRLFLEMWGLSFLPNEFSYPFVFKFCSVLGLVEPGRMI 20
            +   V+L+ +M+    +P+ F++PFV K C+ L  +E GR I
Sbjct: 156 PYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREI 198


>ref|XP_002516017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544922|gb|EEF46437.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 472

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 36/103 (34%), Positives = 56/103 (54%)
 Frame = -2

Query: 328 HARLIQLGMYTDVYLSSKLLYFYCCNGYLGSTRLIFNTTPISCLPQFFWNTVIRAYVGNS 149
           HA L  +G+  D  L+ KL+  YC    L   RL+F+  P   L  F WN +IR Y    
Sbjct: 110 HASLCHVGLQFDRVLAPKLVNLYCICNSLCEARLLFDKIPKRNL--FLWNVLIRGYAWYG 167

Query: 148 KFIGGVRLFLEMWGLSFLPNEFSYPFVFKFCSVLGLVEPGRMI 20
            +   ++L+ +++    +P+ F++PFV K CS L  +E GR+I
Sbjct: 168 PYEASIQLYYKIFDYGLVPDNFTFPFVLKACSALSAIEDGRLI 210


>ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449522468|ref|XP_004168248.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 36/103 (34%), Positives = 58/103 (56%)
 Frame = -2

Query: 328 HARLIQLGMYTDVYLSSKLLYFYCCNGYLGSTRLIFNTTPISCLPQFFWNTVIRAYVGNS 149
           HAR+ Q+G+  +  L++KL+  YC    L +  L+F+   IS    F WN +IR Y  N 
Sbjct: 24  HARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDR--ISKRNLFLWNVMIRGYAWNG 81

Query: 148 KFIGGVRLFLEMWGLSFLPNEFSYPFVFKFCSVLGLVEPGRMI 20
            +   + L+ +M     +P++F++PFV K CS L  +E G+ I
Sbjct: 82  PYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKI 124


>ref|XP_003594259.1| Thymidine kinase [Medicago truncatula] gi|355483307|gb|AES64510.1|
           Thymidine kinase [Medicago truncatula]
          Length = 644

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 38/108 (35%), Positives = 56/108 (51%)
 Frame = -2

Query: 328 HARLIQLGMYTDVYLSSKLLYFYCCNGYLGSTRLIFNTTPISCLPQFFWNTVIRAYVGNS 149
           HA +I +G   + YL  KLL  Y  +G L + + +FN         F WN +I  YV   
Sbjct: 194 HAHMIIVGYVPNEYLKIKLLILYAKSGCLETAQFLFNNLVEK--DSFAWNAMIAGYVQKG 251

Query: 148 KFIGGVRLFLEMWGLSFLPNEFSYPFVFKFCSVLGLVEPGRMIRGVMI 5
               G+  F EM   S  P+++++  VF+ C+ L L+EPGR   GVM+
Sbjct: 252 LEEVGLETFYEMRQASLRPDQYTFASVFRACATLALLEPGRQAHGVML 299