BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014331
         (231 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]         96   4e-18
ref|NP_188886.1| pentatricopeptide repeat-containing protein [Ar...    96   4e-18
ref|XP_002514843.1| pentatricopeptide repeat-containing protein,...    95   5e-18
ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat...    95   7e-18
emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]    95   7e-18

>dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 43/76 (56%), Positives = 56/76 (73%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           MI R +APDTITYNSL+DG C +  + EA  +FDLMV  G EPDIV+Y+ +IN YCKAKR
Sbjct: 370 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 429

Query: 182 LDEAMQLYENLKCKCL 229
           +D+ M+L+  +  K L
Sbjct: 430 VDDGMRLFREISSKGL 445



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 27/74 (36%), Positives = 51/74 (68%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           MI RN+ PD +T+++L+D    +G++ EA  +++ M+  G+ PD ++YN++I+G+CK   
Sbjct: 335 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENC 394

Query: 182 LDEAMQLYENLKCK 223
           L EA Q+++ +  K
Sbjct: 395 LHEANQMFDLMVSK 408



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 28/64 (43%), Positives = 45/64 (70%)
 Frame = +2

Query: 23  PDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKRLDEAMQL 202
           PDTIT+++L++G CL+GR+ EA  + D MV+    PD+V+ +T+ING C   R+ EA+ L
Sbjct: 167 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 226

Query: 203 YENL 214
            + +
Sbjct: 227 IDRM 230



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 23/69 (33%), Positives = 45/69 (65%)
 Frame = +2

Query: 11  RNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKRLDE 190
           + + P+TITYN+L+ G C  G++  A  +F  MV  G+ P +V+Y  +++G C    L++
Sbjct: 443 KGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNK 502

Query: 191 AMQLYENLK 217
           A++++E ++
Sbjct: 503 ALEIFEKMQ 511



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 25/72 (34%), Positives = 45/72 (62%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           M++    PD +T ++L++G CL+GR+ EA  + D MV+ G +PD V+Y  ++N  CK+  
Sbjct: 195 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 254

Query: 182 LDEAMQLYENLK 217
              A+ L+  ++
Sbjct: 255 SALALDLFRKME 266



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 26/74 (35%), Positives = 42/74 (56%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           M+ R V P  +TY  L+DG C  G + +A  +F+ M  + +   I  YN +I+G C A +
Sbjct: 475 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASK 534

Query: 182 LDEAMQLYENLKCK 223
           +D+A  L+ +L  K
Sbjct: 535 VDDAWSLFCSLSDK 548



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 23/60 (38%), Positives = 38/60 (63%)
 Frame = +2

Query: 38  YNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKRLDEAMQLYENLK 217
           YN ++ G C   ++++A ++F  + D G++PD+V+YN MI G CK   L EA  L+  +K
Sbjct: 522 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK 581


>ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
           gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis
           thaliana] gi|51968798|dbj|BAD43091.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332643122|gb|AEE76643.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 43/76 (56%), Positives = 56/76 (73%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           MI R +APDTITYNSL+DG C +  + EA  +FDLMV  G EPDIV+Y+ +IN YCKAKR
Sbjct: 341 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 400

Query: 182 LDEAMQLYENLKCKCL 229
           +D+ M+L+  +  K L
Sbjct: 401 VDDGMRLFREISSKGL 416



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 27/74 (36%), Positives = 51/74 (68%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           MI RN+ PD +T+++L+D    +G++ EA  +++ M+  G+ PD ++YN++I+G+CK   
Sbjct: 306 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENC 365

Query: 182 LDEAMQLYENLKCK 223
           L EA Q+++ +  K
Sbjct: 366 LHEANQMFDLMVSK 379



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 28/64 (43%), Positives = 45/64 (70%)
 Frame = +2

Query: 23  PDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKRLDEAMQL 202
           PDTIT+++L++G CL+GR+ EA  + D MV+    PD+V+ +T+ING C   R+ EA+ L
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197

Query: 203 YENL 214
            + +
Sbjct: 198 IDRM 201



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 23/69 (33%), Positives = 45/69 (65%)
 Frame = +2

Query: 11  RNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKRLDE 190
           + + P+TITYN+L+ G C  G++  A  +F  MV  G+ P +V+Y  +++G C    L++
Sbjct: 414 KGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNK 473

Query: 191 AMQLYENLK 217
           A++++E ++
Sbjct: 474 ALEIFEKMQ 482



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 25/72 (34%), Positives = 45/72 (62%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           M++    PD +T ++L++G CL+GR+ EA  + D MV+ G +PD V+Y  ++N  CK+  
Sbjct: 166 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 225

Query: 182 LDEAMQLYENLK 217
              A+ L+  ++
Sbjct: 226 SALALDLFRKME 237



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 26/74 (35%), Positives = 42/74 (56%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           M+ R V P  +TY  L+DG C  G + +A  +F+ M  + +   I  YN +I+G C A +
Sbjct: 446 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASK 505

Query: 182 LDEAMQLYENLKCK 223
           +D+A  L+ +L  K
Sbjct: 506 VDDAWSLFCSLSDK 519



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 23/60 (38%), Positives = 38/60 (63%)
 Frame = +2

Query: 38  YNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKRLDEAMQLYENLK 217
           YN ++ G C   ++++A ++F  + D G++PD+V+YN MI G CK   L EA  L+  +K
Sbjct: 493 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK 552


>ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545894|gb|EEF47397.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 594

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 41/76 (53%), Positives = 58/76 (76%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           MI+R + P+ +TYNSLMDG CL  +M+EA  VFD+MV+ G  PD++SYN +I GYCK++R
Sbjct: 410 MIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSER 469

Query: 182 LDEAMQLYENLKCKCL 229
           +DEA QL++ +  K L
Sbjct: 470 IDEAKQLFDEMSHKGL 485



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 25/69 (36%), Positives = 51/69 (73%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           M+ RN+ PD +T++  +D  C +G + EA ++ +LM++ GL P++V+YN++++GYC   +
Sbjct: 375 MLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQ 434

Query: 182 LDEAMQLYE 208
           +DEA ++++
Sbjct: 435 MDEARKVFD 443



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 28/72 (38%), Positives = 46/72 (63%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           M  + + P++IT+ +L+ G C  GR   A  +F  M   G  PD+++Y+T+++G+CK   
Sbjct: 480 MSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGH 539

Query: 182 LDEAMQLYENLK 217
           LDEA+ L+E LK
Sbjct: 540 LDEALALFEALK 551



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 26/71 (36%), Positives = 46/71 (64%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           M++ N+ PD +T++ L+D  C +G + EA +VF  M+   +EPDIV+Y+++I+G CK+  
Sbjct: 305 MLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSL 364

Query: 182 LDEAMQLYENL 214
             E+  L   +
Sbjct: 365 WKESSTLLNEM 375



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 26/71 (36%), Positives = 45/71 (63%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           M+ +  APD ++YN L+ G C   R++EA  +FD M   GL P+ +++ T+I+G C+A R
Sbjct: 445 MVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGR 504

Query: 182 LDEAMQLYENL 214
              A +L++ +
Sbjct: 505 PYAAKELFKKM 515


>ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 41/71 (57%), Positives = 53/71 (74%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           MIQR V PD +TY +LMDG CLQ  M+EA  VFD+MV  G  PD++SY T+INGYCK  +
Sbjct: 292 MIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHK 351

Query: 182 LDEAMQLYENL 214
           +D+AM L+E +
Sbjct: 352 IDKAMYLFEEM 362



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 22/69 (31%), Positives = 49/69 (71%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           M+   + PD + +++++D  C +G++ EA  + D+M+  G+EPD+V+Y T+++G+C    
Sbjct: 257 MVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSE 316

Query: 182 LDEAMQLYE 208
           +DEA+++++
Sbjct: 317 MDEAVKVFD 325



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 25/65 (38%), Positives = 45/65 (69%)
 Frame = +2

Query: 23  PDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKRLDEAMQL 202
           PD  T+ +L+ G C++G++ EA ++FD M+D G +P++V+Y T+ING CK      A++L
Sbjct: 124 PDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRL 183

Query: 203 YENLK 217
             +++
Sbjct: 184 LRSME 188



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 30/76 (39%), Positives = 47/76 (61%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           M ++   PDT TYN+LM G C  GR+++A  +F  MV  G  PD+V+Y+ +++  CK   
Sbjct: 362 MCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCH 421

Query: 182 LDEAMQLYENLKCKCL 229
           L+EAM L + ++   L
Sbjct: 422 LEEAMALLKAIEASNL 437



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 29/76 (38%), Positives = 42/76 (55%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           M+ R   PD +TY+ L+D  C    +EEA  +   +  + L PDI  YN +I+G C+A  
Sbjct: 397 MVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGE 456

Query: 182 LDEAMQLYENLKCKCL 229
           L+ A  L+ NL  K L
Sbjct: 457 LEAARDLFSNLSSKGL 472



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 26/64 (40%), Positives = 39/64 (60%)
 Frame = +2

Query: 14  NVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKRLDEA 193
           N+ PD   YN ++DG C  G +E A ++F  +   GL P + +YN MI+G CK   L+EA
Sbjct: 436 NLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEA 495

Query: 194 MQLY 205
            +L+
Sbjct: 496 NKLF 499


>emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 41/71 (57%), Positives = 53/71 (74%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           MIQR V PD +TY +LMDG CLQ  M+EA  VFD+MV  G  PD++SY T+INGYCK  +
Sbjct: 301 MIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHK 360

Query: 182 LDEAMQLYENL 214
           +D+AM L+E +
Sbjct: 361 IDKAMYLFEEM 371



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 22/69 (31%), Positives = 49/69 (71%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           M+   + PD + +++++D  C +G++ EA  + D+M+  G+EPD+V+Y T+++G+C    
Sbjct: 266 MVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSE 325

Query: 182 LDEAMQLYE 208
           +DEA+++++
Sbjct: 326 MDEAVKVFD 334



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 25/65 (38%), Positives = 45/65 (69%)
 Frame = +2

Query: 23  PDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKRLDEAMQL 202
           PD  T+ +L+ G C++G++ EA ++FD M+D G +P++V+Y T+ING CK      A++L
Sbjct: 133 PDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRL 192

Query: 203 YENLK 217
             +++
Sbjct: 193 LRSME 197



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 30/76 (39%), Positives = 48/76 (63%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           M ++   PDT TYN+LM G C  GR+++A  +F  MV  G  PD+V+Y+ +++  CK + 
Sbjct: 371 MCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRH 430

Query: 182 LDEAMQLYENLKCKCL 229
           L+EAM L + ++   L
Sbjct: 431 LEEAMALLKAIEASNL 446



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 29/76 (38%), Positives = 42/76 (55%)
 Frame = +2

Query: 2   MIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKR 181
           M+ R   PD +TY+ L+D  C    +EEA  +   +  + L PDI  YN +I+G C+A  
Sbjct: 406 MVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGE 465

Query: 182 LDEAMQLYENLKCKCL 229
           L+ A  L+ NL  K L
Sbjct: 466 LEAARDLFSNLSSKGL 481



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 26/64 (40%), Positives = 39/64 (60%)
 Frame = +2

Query: 14  NVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPDIVSYNTMINGYCKAKRLDEA 193
           N+ PD   YN ++DG C  G +E A ++F  +   GL P + +YN MI+G CK   L+EA
Sbjct: 445 NLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEA 504

Query: 194 MQLY 205
            +L+
Sbjct: 505 NKLF 508