BLASTX nr result
ID: Coptis24_contig00014301
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00014301 (236 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003537576.1| PREDICTED: U1 small nuclear ribonucleoprotei... 86 2e-15 ref|XP_003537575.1| PREDICTED: U1 small nuclear ribonucleoprotei... 86 2e-15 ref|XP_003517230.1| PREDICTED: U1 small nuclear ribonucleoprotei... 86 2e-15 ref|XP_004143506.1| PREDICTED: U1 small nuclear ribonucleoprotei... 83 2e-14 emb|CBI17535.3| unnamed protein product [Vitis vinifera] 81 8e-14 >ref|XP_003537576.1| PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like isoform 2 [Glycine max] Length = 465 Score = 86.3 bits (212), Expect = 2e-15 Identities = 42/53 (79%), Positives = 47/53 (88%) Frame = +3 Query: 78 MSDYGNNNDAFMRNSNAAVQARVKAQSRANVQQLKLIGQSHPTGLTSSLLKLF 236 M D +NNDAFMRN NAAVQAR KAQ+R+NV QLKLIGQSHPTGLT++LLKLF Sbjct: 1 MGDNNSNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLF 53 >ref|XP_003537575.1| PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like isoform 1 [Glycine max] Length = 482 Score = 86.3 bits (212), Expect = 2e-15 Identities = 42/53 (79%), Positives = 47/53 (88%) Frame = +3 Query: 78 MSDYGNNNDAFMRNSNAAVQARVKAQSRANVQQLKLIGQSHPTGLTSSLLKLF 236 M D +NNDAFMRN NAAVQAR KAQ+R+NV QLKLIGQSHPTGLT++LLKLF Sbjct: 1 MGDNNSNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLF 53 >ref|XP_003517230.1| PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like [Glycine max] Length = 481 Score = 86.3 bits (212), Expect = 2e-15 Identities = 42/53 (79%), Positives = 47/53 (88%) Frame = +3 Query: 78 MSDYGNNNDAFMRNSNAAVQARVKAQSRANVQQLKLIGQSHPTGLTSSLLKLF 236 M D +NNDAFMRN NAAVQAR KAQ+R+NV QLKLIGQSHPTGLT++LLKLF Sbjct: 1 MGDNNSNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLF 53 >ref|XP_004143506.1| PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like [Cucumis sativus] gi|449504870|ref|XP_004162317.1| PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like [Cucumis sativus] Length = 505 Score = 83.2 bits (204), Expect = 2e-14 Identities = 41/49 (83%), Positives = 45/49 (91%) Frame = +3 Query: 90 GNNNDAFMRNSNAAVQARVKAQSRANVQQLKLIGQSHPTGLTSSLLKLF 236 G+ NDAFMRN NAAVQAR KAQ+RANV QLKLIGQSHPTGLT++LLKLF Sbjct: 2 GDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLF 50 >emb|CBI17535.3| unnamed protein product [Vitis vinifera] Length = 504 Score = 81.3 bits (199), Expect = 8e-14 Identities = 40/49 (81%), Positives = 45/49 (91%) Frame = +3 Query: 90 GNNNDAFMRNSNAAVQARVKAQSRANVQQLKLIGQSHPTGLTSSLLKLF 236 G+ NDA MRN+NAAVQAR KAQ+RANV QLKLIGQSHPTGLT++LLKLF Sbjct: 2 GDYNDALMRNNNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLF 50