BLASTX nr result
ID: Coptis24_contig00014273
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00014273 (3287 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1395 0.0 ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1394 0.0 sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras... 1362 0.0 dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer... 1358 0.0 sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras... 1357 0.0 >ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed protein product [Vitis vinifera] Length = 1035 Score = 1395 bits (3612), Expect = 0.0 Identities = 718/1040 (69%), Positives = 814/1040 (78%), Gaps = 36/1040 (3%) Frame = +1 Query: 55 MFSSKPVFFSTNLNNKFDSFPSFYKPSQIFIFNQTPID----MWRTFAKQLV--SARKFA 216 M S K S NL D SF KP+ F P+ MWR AK+ + + RK Sbjct: 1 MSSGKTPILSANLGRDLDLIISFEKPTN---FRPNPLKKPTVMWRNIAKRAIPRAPRKCV 57 Query: 217 ---------KFSVNSFVET-------KFKPFELTKSGNFGFLEMGLCRNGELLWDKEESV 348 ++S F + KF FE + + GF EMG R GE+ +E++V Sbjct: 58 YLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEIS-SREDAV 116 Query: 349 VK---DCFRSPIGLN-FTSRGYASVAEAVVN-DSEEDV--LEEVQXXXXXXXXXXXXXXX 507 + C R+ +G + F + YASVAEAV + D EEDV +E+Q Sbjct: 117 GRPSFGCLRNQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQVN 176 Query: 508 XXXXXXXXXHT-----KYHMLRRRQVKIETEAWAQAAKEYKELLSDMCEHKLAPNLPYMK 672 +Y LRRRQVKIETEAW AAKEYKELL DMCE KLAPNLPYMK Sbjct: 177 FKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMK 236 Query: 673 SLFLGWFEPFKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMALITMHKLMGLLMTGGEH 852 SLFLGWFEP +D IV+EQ+LC+ GKN+AAYAP FD LPADMM++ITMHKL+GLLMTGGEH Sbjct: 237 SLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEH 296 Query: 853 GCARVVQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXXXXXXXXXXQEKLRKRV 1032 G RVVQA+ +G+AIEQEVRI+ FL QEKLRK+V Sbjct: 297 GSTRVVQAACVIGDAIEQEVRIHNFL-EKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKV 355 Query: 1033 TTLMKKQKLHQVRQIVRRQDDLKPWGQAAQAKVGSRLIELLLQTAYIQPPVD-QIADTPP 1209 T LMKKQKLH RQIV+ D+ KPWG A+AKVGSRLIELL+QTAYIQPPVD Q+ADTPP Sbjct: 356 TNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPP 415 Query: 1210 DIRPAFSHSLKTVSKDGQKSSRRFGVIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTG 1389 DIRPAF H+ KTV ++ +K RRFGVIECDPLV++GLE+TARHMVIPY+PMLVPP+ WTG Sbjct: 416 DIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTG 475 Query: 1390 YEKGGYLFLPSYVMRTHGAKQQRQALKWTPKKQLEPVFEALNTLGNTKWRINKRVLGVID 1569 Y+KG +LFLPSYVMRTHGA+QQR+A+K P+ QLEPVFEALNTLGNTKWRINKR+ V+D Sbjct: 476 YDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVVD 535 Query: 1570 RIWASGGRXXXXXXXXXXXXXXXXXTEDEAELKRWRWKVKDAKKENSERHSQRCDIELKL 1749 RIWA GG TEDEA+L++W+WKVK KK NSERHSQRCDIELKL Sbjct: 536 RIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELKL 595 Query: 1750 SVARKMKDESGFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEFAEGRPLGKSGLRWLK 1929 +VARKMKDE GF+YPH++DFRGRAYPMHPYLNHLGSDLCRG LEFAEGRPLG SGL WLK Sbjct: 596 AVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHWLK 655 Query: 1930 IHIANLYAGGVDKLSYDGRVSFTENHLDDIFDSADRPLEGKRWWLEAEDPFQCLAACINL 2109 IH+ANL+AGGVDKLS++GR++FTENHLDDIFDSADRPLEGKRWWL AEDPFQ LAACINL Sbjct: 656 IHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLAACINL 715 Query: 2110 SEALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNLVAGDKPADVYSGIAA 2289 SEALRSSSPETTIS++PVHQDGSCNGLQHYAALGRD+LGATAVNLVAG+KPADVYSGIAA Sbjct: 716 SEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVYSGIAA 775 Query: 2290 RVLEIMQQDAKRDPTNDADALRARLLVNQVNRKLVKQTVMTSVYGVTYIGAREQIKKRLK 2469 RVL+IM++DA++DP DALRAR+L+NQV+RKLVKQTVMTSVYGVTYIGAR+QIK+RLK Sbjct: 776 RVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 835 Query: 2470 ERGVI-DDAELFGSACYAAKVTLTALGEMFQAARGIMSWLGECAKVIASENHPVRWTTPL 2646 ER I DD ELFG+ACYAAK+TLTALGEMFQAAR IMSWLG+CAK+IASEN PVRWTTPL Sbjct: 836 ERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRWTTPL 895 Query: 2647 GLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIA 2826 GLPVVQPYRKLGRHLIKTSLQVLTLQRET+ +MVKRQRTAFPPNFVHSLDGSHMMMTAIA Sbjct: 896 GLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMMMTAIA 955 Query: 2827 CKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENLLESFQQSFPTLSFPP 3006 CKKAGLNFAGVHDSYWTHACDVDEMNR+LREKFV+LYE PILENLLESFQQSFP L FPP Sbjct: 956 CKKAGLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPALEFPP 1015 Query: 3007 LPERGDFDLNEVMKSPYFFN 3066 LPERGDFDL EV++SPYFFN Sbjct: 1016 LPERGDFDLREVLESPYFFN 1035 >ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis vinifera] Length = 978 Score = 1394 bits (3609), Expect = 0.0 Identities = 702/983 (71%), Positives = 797/983 (81%), Gaps = 17/983 (1%) Frame = +1 Query: 169 MWRTFAKQLVSAR-----KFAKFSVNS-----FVETKFKPFELTKSGNFGFLEMGLCRNG 318 MWR AK + R + + FS ++ + K + E N GL R G Sbjct: 1 MWRNLAKHAYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRIG 60 Query: 319 ELLWDKEESVVKDCF---RSPI---GLNFTSRGYASVAEAVVNDSEEDVLEEVQXXXXXX 480 L + ++E + + F ++P+ GL +GYAS AEA+ ++ + ++EVQ Sbjct: 61 VLSFQQDE-LGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIASEEDMSGVDEVQELVEEV 119 Query: 481 XXXXXXXXXXXXXXXXXXHTKYHMLRRRQVKIETEAWAQAAKEYKELLSDMCEHKLAPNL 660 K+++LRRRQ+K+ETEAW +AAKEY+ELLSDMCE KLAPNL Sbjct: 120 NKGDKLEKQPKLIGGVA-QGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNL 178 Query: 661 PYMKSLFLGWFEPFKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMALITMHKLMGLLMT 840 PY+KSLFLGWFEP +D I EQDLCKQGKNRAAYAP FD LPADMMA+ITMHKLMGLLMT Sbjct: 179 PYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMT 238 Query: 841 GGEHGCARVVQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXXXXXXXXXXQEKL 1020 G +G ARVVQA+ +GEAIE EVRI RF+ QEKL Sbjct: 239 GEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKE---QEKL 295 Query: 1021 RKRVTTLMKKQKLHQVRQIVRRQDDLKPWGQAAQAKVGSRLIELLLQTAYIQPPVDQIAD 1200 RK+V+ LMKKQKL QVRQIV+RQDD KPWGQ A KVGSRLIELL++TAYIQPP DQ+ D Sbjct: 296 RKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGD 355 Query: 1201 TPPDIRPAFSHSLKTVSKDGQKSSRRFGVIECDPLVRQGLEKTARHMVIPYMPMLVPPIN 1380 PPDIRPAF H+LKTV K+ QK +RR+GVIECDPLVR+GLEKTARHMVIPYMPMLVPP+N Sbjct: 356 GPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLN 415 Query: 1381 WTGYEKGGYLFLPSYVMRTHGAKQQRQALKWTPKKQLEPVFEALNTLGNTKWRINKRVLG 1560 WTGY+KG YLFLPSYVMR HGA+QQR+A+K P+K LEP FEALNTLGNTKWRINKRVLG Sbjct: 416 WTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLG 475 Query: 1561 VIDRIWASGGRXXXXXXXXXXXXXXXXXTEDEAELKRWRWKVKDAKKENSERHSQRCDIE 1740 VIDRIWASGGR TEDEAE+++W+WKV+ KKENSERHSQRCDIE Sbjct: 476 VIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIE 535 Query: 1741 LKLSVARKMKDESGFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEFAEGRPLGKSGLR 1920 LKL+VARKMKDE GF+YPH++DFRGRAYPMHPYLNHLGSDLCRG LEFAEGRPLGKSGLR Sbjct: 536 LKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLR 595 Query: 1921 WLKIHIANLYAGGVDKLSYDGRVSFTENHLDDIFDSADRPLEGKRWWLEAEDPFQCLAAC 2100 WLKIH+AN+YAGGVDKLSY+GRV+FTENHL+DIFDSADRPLEG+RWWL AEDPFQCLA C Sbjct: 596 WLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATC 655 Query: 2101 INLSEALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNLVAGDKPADVYSG 2280 INLSEALRSSSPETTIS+MPVHQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVYSG Sbjct: 656 INLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSG 715 Query: 2281 IAARVLEIMQQDAKRDPTNDADALRARLLVNQVNRKLVKQTVMTSVYGVTYIGAREQIKK 2460 IAARVL+IMQ+DA++DP + +ALRARLL++QV+RKLVKQTVMTSVYGVTYIGAR+QIK+ Sbjct: 716 IAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 775 Query: 2461 RLKER-GVIDDAELFGSACYAAKVTLTALGEMFQAARGIMSWLGECAKVIASENHPVRWT 2637 RLKER + D+ E+F ++CYAAK TLTALGEMF+AAR IMSWLG+CAKVIASENHPVRW Sbjct: 776 RLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASENHPVRWN 835 Query: 2638 TPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 2817 TPLGLPVVQPYRKLGRHLIKTSLQVL+LQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT Sbjct: 836 TPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 895 Query: 2818 AIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENLLESFQQSFPTLS 2997 A+AC+KAGLNFAGVHDSYWTHACDVDEMNRILREKFVELY PILENLLE FQ+SFPTL+ Sbjct: 896 AVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGFQKSFPTLN 955 Query: 2998 FPPLPERGDFDLNEVMKSPYFFN 3066 FPPLPERGDFDL EV++SPYFFN Sbjct: 956 FPPLPERGDFDLREVLESPYFFN 978 >sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2, chloroplastic/mitochondrial; AltName: Full=NsRpoT-B; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 2; Flags: Precursor gi|21425639|emb|CAC82575.2| phage-type RNA polymerase [Nicotiana sylvestris] Length = 1020 Score = 1362 bits (3525), Expect = 0.0 Identities = 698/1034 (67%), Positives = 810/1034 (78%), Gaps = 30/1034 (2%) Frame = +1 Query: 55 MFSSK-PVFFSTNLNNKFDSFPSFYKPSQIFI--FNQTPIDMWRTFAKQLVSAR------ 207 M S+K P+ + LN D KP+ + I ++ +PI MWR KQL S Sbjct: 1 MSSTKTPISLTIKLNQFTD------KPTGLDINPYHNSPI-MWRNIIKQLSSRTPQKLLF 53 Query: 208 -------KFAKFSVNSFVE--TKFKPFELTKSGNFGFLEMGLCRNGELLWDKEESVVKDC 360 F F +S + TKF+ N + MG GE L +E + + Sbjct: 54 SSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSN---IVMGFQNLGEYL-PGDEFLSRPL 109 Query: 361 FRSPIGLNFTSR-GYASVAEAVV---NDSEEDV--LEEV-----QXXXXXXXXXXXXXXX 507 ++ + NF R YASVAEAV D+EEDV ++EV + Sbjct: 110 IKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRK 169 Query: 508 XXXXXXXXXHTKYHMLRRRQVKIETEAWAQAAKEYKELLSDMCEHKLAPNLPYMKSLFLG 687 H KY L+RRQVK+ETEAW QAAKEYKELL DMCE KLAPNLPY+KSLFLG Sbjct: 170 QRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLG 229 Query: 688 WFEPFKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMALITMHKLMGLLMTGGEHGCARV 867 WFEP +DKI EEQ+LC QGK++AAYA F LPADMMA+ITMHKLMGLLMTGG+HG ARV Sbjct: 230 WFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARV 289 Query: 868 VQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXXXXXXXXXXQEKLRKRVTTLMK 1047 VQA+L +G+AIEQEVRI+ FL QEKLRK+VT LMK Sbjct: 290 VQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQE---QEKLRKKVTNLMK 346 Query: 1048 KQKLHQVRQIVRRQDDLKPWGQAAQAKVGSRLIELLLQTAYIQPPVDQIADTPPDIRPAF 1227 KQKL V QIVRRQDD KPWGQ A+AKVGSRLI+LLLQTAYIQPP +Q+A PPDIRPAF Sbjct: 347 KQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAF 406 Query: 1228 SHSLKTVSKDGQKSSRRFGVIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYEKGGY 1407 HS++TV+K+ + +SRR+G+I+CD LV +GLE+TARHMVIPYMPMLVPP+ WTGY+KGG+ Sbjct: 407 VHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGH 466 Query: 1408 LFLPSYVMRTHGAKQQRQALKWTPKKQLEPVFEALNTLGNTKWRINKRVLGVIDRIWASG 1587 L+LPSYVMRTHGA+QQR+A+K + QL+PVFEAL+TLGNTKWRINKRVL V+DRIWA G Sbjct: 467 LYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGG 526 Query: 1588 GRXXXXXXXXXXXXXXXXXTEDEAELKRWRWKVKDAKKENSERHSQRCDIELKLSVARKM 1767 GR TEDEA +WRWKVK KKEN ERHSQRCDIELKL+VARKM Sbjct: 527 GRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKM 586 Query: 1768 KDESGFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEFAEGRPLGKSGLRWLKIHIANL 1947 KDE F+YPH+VDFRGRAYPMHP+LNHLGSD+CRG LEFAEGRPLG+SGLRWLKIH+ANL Sbjct: 587 KDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANL 646 Query: 1948 YAGGVDKLSYDGRVSFTENHLDDIFDSADRPLEGKRWWLEAEDPFQCLAACINLSEALRS 2127 +AGGV+KLS +GR+ FTENH+DDIFDS+D+PLEG+RWWL AEDPFQCLA CINLSEA+RS Sbjct: 647 FAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRS 706 Query: 2128 SSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNLVAGDKPADVYSGIAARVLEIM 2307 SSPET++S++PVHQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVYSGIAARVL+IM Sbjct: 707 SSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIM 766 Query: 2308 QQDAKRDPTNDADALRARLLVNQVNRKLVKQTVMTSVYGVTYIGAREQIKKRLKERGVI- 2484 ++DA+RDP DA+RAR+LVNQV+RKLVKQTVMTSVYGVTYIGAR+QIK+RLKERG I Sbjct: 767 KRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIA 826 Query: 2485 DDAELFGSACYAAKVTLTALGEMFQAARGIMSWLGECAKVIASENHPVRWTTPLGLPVVQ 2664 DD+ELFG+ACYAAKVTLTALGEMF+AAR IM+WLGECAK+IASEN PVRWTTPLGLPVVQ Sbjct: 827 DDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQ 886 Query: 2665 PYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGL 2844 PYRK+GRHLIKTSLQ+LTLQRET+KVMVKRQRTAFPPNF+HSLDGSHMMMTA+AC++AGL Sbjct: 887 PYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGL 946 Query: 2845 NFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENLLESFQQSFPTLSFPPLPERGD 3024 NFAGVHDSYWTHACDVD++NRILREKFVELYE PILE LLESFQ S+PTL FPPLPERGD Sbjct: 947 NFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGD 1006 Query: 3025 FDLNEVMKSPYFFN 3066 FD+ +V++SPYFFN Sbjct: 1007 FDMRDVLESPYFFN 1020 >dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana sylvestris] gi|17221595|dbj|BAB78465.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana sylvestris] Length = 1020 Score = 1358 bits (3516), Expect = 0.0 Identities = 696/1034 (67%), Positives = 809/1034 (78%), Gaps = 30/1034 (2%) Frame = +1 Query: 55 MFSSK-PVFFSTNLNNKFDSFPSFYKPSQIFI--FNQTPIDMWRTFAKQLVSAR------ 207 M S+K P+ + LN D KP+ + I ++ +PI MWR KQL S Sbjct: 1 MSSTKTPISLTIKLNQFTD------KPTGLDINPYHNSPI-MWRNIIKQLSSRTPQKLLF 53 Query: 208 -------KFAKFSVNSFVE--TKFKPFELTKSGNFGFLEMGLCRNGELLWDKEESVVKDC 360 F F +S + TKF+ N + MG GE L +E + + Sbjct: 54 SSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSN---IVMGFQNLGEYL-PGDEFLSRPL 109 Query: 361 FRSPIGLNFTSR-GYASVAEAVV---NDSEEDV--LEEV-----QXXXXXXXXXXXXXXX 507 ++ + NF R YASVAEAV D+EEDV ++EV + Sbjct: 110 IKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRK 169 Query: 508 XXXXXXXXXHTKYHMLRRRQVKIETEAWAQAAKEYKELLSDMCEHKLAPNLPYMKSLFLG 687 H KY L+RRQVK+ETEAW QAAKEYKELL DMCE KLAPNLPY+KSLFLG Sbjct: 170 QRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLG 229 Query: 688 WFEPFKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMALITMHKLMGLLMTGGEHGCARV 867 WFEP +DKI EEQ+LC QGK++AAYA F LPADMMA+ITMHKLMGLLMTGG+HG ARV Sbjct: 230 WFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARV 289 Query: 868 VQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXXXXXXXXXXQEKLRKRVTTLMK 1047 VQA+L +G+AIEQEVRI+ FL QEKLRK+VT LMK Sbjct: 290 VQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQE---QEKLRKKVTNLMK 346 Query: 1048 KQKLHQVRQIVRRQDDLKPWGQAAQAKVGSRLIELLLQTAYIQPPVDQIADTPPDIRPAF 1227 KQKL V QIVRRQDD KPWGQ A+AKVGSRLI+LLLQTAYIQPP +Q+A PPDI PAF Sbjct: 347 KQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPPAF 406 Query: 1228 SHSLKTVSKDGQKSSRRFGVIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYEKGGY 1407 HS++TV+K+ + +SRR+G+I+CD LV +GLE+TARHMVIPYMPMLVPP+ WTGY+KGG+ Sbjct: 407 VHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGH 466 Query: 1408 LFLPSYVMRTHGAKQQRQALKWTPKKQLEPVFEALNTLGNTKWRINKRVLGVIDRIWASG 1587 L+LPSYVMRTHGA+QQR+A+K + QL+PVFEAL+TLGNTKWRINKRVL V+DRIWA G Sbjct: 467 LYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGG 526 Query: 1588 GRXXXXXXXXXXXXXXXXXTEDEAELKRWRWKVKDAKKENSERHSQRCDIELKLSVARKM 1767 GR TEDEA L +WRWKVK KKEN ERHSQRCDIELKL+VARKM Sbjct: 527 GRLADLVDRDDAPLPEEPDTEDEALLPKWRWKVKSVKKENRERHSQRCDIELKLAVARKM 586 Query: 1768 KDESGFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEFAEGRPLGKSGLRWLKIHIANL 1947 KDE F+YPH+VDFRGRAYPMHP+LNHLGSD+CRG LEFAEGRPLG+SGLRWLKIH+ANL Sbjct: 587 KDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANL 646 Query: 1948 YAGGVDKLSYDGRVSFTENHLDDIFDSADRPLEGKRWWLEAEDPFQCLAACINLSEALRS 2127 +AGGV+KLS +GR+ FTENH+DDIFDS+D+PLEG+RWWL AEDPFQCLA CINLSEA+RS Sbjct: 647 FAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRS 706 Query: 2128 SSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNLVAGDKPADVYSGIAARVLEIM 2307 SSPET++S++PVHQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPA+ YSGIAARVL+IM Sbjct: 707 SSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPAEAYSGIAARVLDIM 766 Query: 2308 QQDAKRDPTNDADALRARLLVNQVNRKLVKQTVMTSVYGVTYIGAREQIKKRLKERGVI- 2484 ++DA+RDP DA+RAR+LVNQV+RKLVKQTVMTSVYGVTYIGAR+QIK+RLKERG I Sbjct: 767 KRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIA 826 Query: 2485 DDAELFGSACYAAKVTLTALGEMFQAARGIMSWLGECAKVIASENHPVRWTTPLGLPVVQ 2664 DD+ELFG+ACYAAKVTLTALGEMF+AAR IM+WLGECAK+IASEN PVRWTTPLGLPVVQ Sbjct: 827 DDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQ 886 Query: 2665 PYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGL 2844 PYRK+GRHLIKTSLQ+LTLQRET+KVMVKRQRTAFPPNF+HSLDGSHMMMTA+AC++AGL Sbjct: 887 PYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGL 946 Query: 2845 NFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENLLESFQQSFPTLSFPPLPERGD 3024 NFAGVHDSYWTHACDVD++NRILREKFVELYE PILE LLESFQ S+PTL FPPLPERGD Sbjct: 947 NFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGD 1006 Query: 3025 FDLNEVMKSPYFFN 3066 FD+ +V++SPYFFN Sbjct: 1007 FDMRDVLESPYFFN 1020 >sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName: Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 1B; Flags: Precursor Length = 1002 Score = 1357 bits (3512), Expect = 0.0 Identities = 665/898 (74%), Positives = 750/898 (83%), Gaps = 7/898 (0%) Frame = +1 Query: 394 RGYASVAEAVVNDSEEDV------LEEVQXXXXXXXXXXXXXXXXXXXXXXXXHTKYHML 555 R Y S AEA+V+ SEED+ +EE+ KY+ L Sbjct: 112 RSYGSAAEAIVSTSEEDIDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVG--KYNFL 169 Query: 556 RRRQVKIETEAWAQAAKEYKELLSDMCEHKLAPNLPYMKSLFLGWFEPFKDKIVEEQDLC 735 RRRQ+K+ETEAW +AAKEY+ELL DMCE KLAPNLPYMKSLFLGWFEP +D I EQ LC Sbjct: 170 RRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLC 229 Query: 736 KQGKNRAAYAPQFDLLPADMMALITMHKLMGLLMTGGEHGCARVVQASLQVGEAIEQEVR 915 +GKNR AYAP FD LPA+MMA+ITMHKLMGLLMTGG G ARVVQA+ +GEAIE E R Sbjct: 230 DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEAR 289 Query: 916 IYRFLXXXXXXXXXXXXXXXXXXXXXXXXXXQEKLRKRVTTLMKKQKLHQVRQIVRRQDD 1095 I+RFL +E+LRK+V LMKKQKL QVR+IV++QDD Sbjct: 290 IHRFLEKTKKSNALSGDLEETPGDMMKE---RERLRKKVKILMKKQKLRQVRKIVKQQDD 346 Query: 1096 LKPWGQAAQAKVGSRLIELLLQTAYIQPPVDQIADTPPDIRPAFSHSLKTVSKDGQKSSR 1275 KPWGQ KVG RLI++L++TAYIQPP DQ+ D PPDIRPAF H+LKTV + K SR Sbjct: 347 EKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSR 404 Query: 1276 RFGVIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYEKGGYLFLPSYVMRTHGAKQQ 1455 R+GVI+CDPLVR+GL+KTARHMVIPYMPMLVPP +W GY+KGGYLFLPSY+MRTHGAKQQ Sbjct: 405 RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQ 464 Query: 1456 RQALKWTPKKQLEPVFEALNTLGNTKWRINKRVLGVIDRIWASGGRXXXXXXXXXXXXXX 1635 R+A+K PKKQLEPVF+AL+TLGNTKWR+N++VLG++DRIWASGGR Sbjct: 465 REAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPE 524 Query: 1636 XXXTEDEAELKRWRWKVKDAKKENSERHSQRCDIELKLSVARKMKDESGFYYPHSVDFRG 1815 TEDEAE+++W+WKVK KKEN ERHSQRCDIELKL+VARKMKDE GFYYPH++DFRG Sbjct: 525 APDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRG 584 Query: 1816 RAYPMHPYLNHLGSDLCRGALEFAEGRPLGKSGLRWLKIHIANLYAGGVDKLSYDGRVSF 1995 RAYPMHPYLNHLGSDLCRG LEFAEGRPLG SGLRWLKIH+AN+Y GGVDKLSY+GRV+F Sbjct: 585 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAF 644 Query: 1996 TENHLDDIFDSADRPLEGKRWWLEAEDPFQCLAACINLSEALRSSSPETTISYMPVHQDG 2175 +ENHL+DIFDSA+RPLEGKRWWL AEDPFQCLA CIN++EALRS SPET ISYMP+HQDG Sbjct: 645 SENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDG 704 Query: 2176 SCNGLQHYAALGRDKLGATAVNLVAGDKPADVYSGIAARVLEIMQQDAKRDPTNDADALR 2355 SCNGLQHYAALGRDKLGA AVNLVAGDKPADVYSGIAARVL+IM++DA +DP ND + +R Sbjct: 705 SCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMR 764 Query: 2356 ARLLVNQVNRKLVKQTVMTSVYGVTYIGAREQIKKRLKERGVI-DDAELFGSACYAAKVT 2532 ARLL+NQV+RKLVKQTVMTSVYGVTYIGAR+QIKKRLKERGVI DD ELF +ACYAAK T Sbjct: 765 ARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTT 824 Query: 2533 LTALGEMFQAARGIMSWLGECAKVIASENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQV 2712 LTALGEMF+AAR IMSWLG+CAK+IA ENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+ Sbjct: 825 LTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQI 884 Query: 2713 LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDV 2892 LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACK++GL+FAGVHDSYWTHACDV Sbjct: 885 LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDV 944 Query: 2893 DEMNRILREKFVELYERPILENLLESFQQSFPTLSFPPLPERGDFDLNEVMKSPYFFN 3066 D+MN+ILREKFVELY+ PILENLLESFQQSFP L FPPLPERGDFDL EV++SPYFFN Sbjct: 945 DQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002