BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014273
         (3287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1395   0.0  
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1394   0.0  
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...  1362   0.0  
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...  1358   0.0  
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1357   0.0  

>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score = 1395 bits (3612), Expect = 0.0
 Identities = 718/1040 (69%), Positives = 814/1040 (78%), Gaps = 36/1040 (3%)
 Frame = +1

Query: 55   MFSSKPVFFSTNLNNKFDSFPSFYKPSQIFIFNQTPID----MWRTFAKQLV--SARKFA 216
            M S K    S NL    D   SF KP+    F   P+     MWR  AK+ +  + RK  
Sbjct: 1    MSSGKTPILSANLGRDLDLIISFEKPTN---FRPNPLKKPTVMWRNIAKRAIPRAPRKCV 57

Query: 217  ---------KFSVNSFVET-------KFKPFELTKSGNFGFLEMGLCRNGELLWDKEESV 348
                     ++S   F +        KF  FE +   + GF EMG  R GE+   +E++V
Sbjct: 58   YLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEIS-SREDAV 116

Query: 349  VK---DCFRSPIGLN-FTSRGYASVAEAVVN-DSEEDV--LEEVQXXXXXXXXXXXXXXX 507
             +    C R+ +G + F  + YASVAEAV + D EEDV   +E+Q               
Sbjct: 117  GRPSFGCLRNQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQVN 176

Query: 508  XXXXXXXXXHT-----KYHMLRRRQVKIETEAWAQAAKEYKELLSDMCEHKLAPNLPYMK 672
                            +Y  LRRRQVKIETEAW  AAKEYKELL DMCE KLAPNLPYMK
Sbjct: 177  FKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMK 236

Query: 673  SLFLGWFEPFKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMALITMHKLMGLLMTGGEH 852
            SLFLGWFEP +D IV+EQ+LC+ GKN+AAYAP FD LPADMM++ITMHKL+GLLMTGGEH
Sbjct: 237  SLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEH 296

Query: 853  GCARVVQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXXXXXXXXXXQEKLRKRV 1032
            G  RVVQA+  +G+AIEQEVRI+ FL                          QEKLRK+V
Sbjct: 297  GSTRVVQAACVIGDAIEQEVRIHNFL-EKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKV 355

Query: 1033 TTLMKKQKLHQVRQIVRRQDDLKPWGQAAQAKVGSRLIELLLQTAYIQPPVD-QIADTPP 1209
            T LMKKQKLH  RQIV+  D+ KPWG  A+AKVGSRLIELL+QTAYIQPPVD Q+ADTPP
Sbjct: 356  TNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPP 415

Query: 1210 DIRPAFSHSLKTVSKDGQKSSRRFGVIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTG 1389
            DIRPAF H+ KTV ++ +K  RRFGVIECDPLV++GLE+TARHMVIPY+PMLVPP+ WTG
Sbjct: 416  DIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTG 475

Query: 1390 YEKGGYLFLPSYVMRTHGAKQQRQALKWTPKKQLEPVFEALNTLGNTKWRINKRVLGVID 1569
            Y+KG +LFLPSYVMRTHGA+QQR+A+K  P+ QLEPVFEALNTLGNTKWRINKR+  V+D
Sbjct: 476  YDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVVD 535

Query: 1570 RIWASGGRXXXXXXXXXXXXXXXXXTEDEAELKRWRWKVKDAKKENSERHSQRCDIELKL 1749
            RIWA GG                  TEDEA+L++W+WKVK  KK NSERHSQRCDIELKL
Sbjct: 536  RIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELKL 595

Query: 1750 SVARKMKDESGFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEFAEGRPLGKSGLRWLK 1929
            +VARKMKDE GF+YPH++DFRGRAYPMHPYLNHLGSDLCRG LEFAEGRPLG SGL WLK
Sbjct: 596  AVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHWLK 655

Query: 1930 IHIANLYAGGVDKLSYDGRVSFTENHLDDIFDSADRPLEGKRWWLEAEDPFQCLAACINL 2109
            IH+ANL+AGGVDKLS++GR++FTENHLDDIFDSADRPLEGKRWWL AEDPFQ LAACINL
Sbjct: 656  IHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLAACINL 715

Query: 2110 SEALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNLVAGDKPADVYSGIAA 2289
            SEALRSSSPETTIS++PVHQDGSCNGLQHYAALGRD+LGATAVNLVAG+KPADVYSGIAA
Sbjct: 716  SEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVYSGIAA 775

Query: 2290 RVLEIMQQDAKRDPTNDADALRARLLVNQVNRKLVKQTVMTSVYGVTYIGAREQIKKRLK 2469
            RVL+IM++DA++DP    DALRAR+L+NQV+RKLVKQTVMTSVYGVTYIGAR+QIK+RLK
Sbjct: 776  RVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 835

Query: 2470 ERGVI-DDAELFGSACYAAKVTLTALGEMFQAARGIMSWLGECAKVIASENHPVRWTTPL 2646
            ER  I DD ELFG+ACYAAK+TLTALGEMFQAAR IMSWLG+CAK+IASEN PVRWTTPL
Sbjct: 836  ERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRWTTPL 895

Query: 2647 GLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIA 2826
            GLPVVQPYRKLGRHLIKTSLQVLTLQRET+ +MVKRQRTAFPPNFVHSLDGSHMMMTAIA
Sbjct: 896  GLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMMMTAIA 955

Query: 2827 CKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENLLESFQQSFPTLSFPP 3006
            CKKAGLNFAGVHDSYWTHACDVDEMNR+LREKFV+LYE PILENLLESFQQSFP L FPP
Sbjct: 956  CKKAGLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPALEFPP 1015

Query: 3007 LPERGDFDLNEVMKSPYFFN 3066
            LPERGDFDL EV++SPYFFN
Sbjct: 1016 LPERGDFDLREVLESPYFFN 1035


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score = 1394 bits (3609), Expect = 0.0
 Identities = 702/983 (71%), Positives = 797/983 (81%), Gaps = 17/983 (1%)
 Frame = +1

Query: 169  MWRTFAKQLVSAR-----KFAKFSVNS-----FVETKFKPFELTKSGNFGFLEMGLCRNG 318
            MWR  AK   + R     + + FS ++     +   K +  E     N      GL R G
Sbjct: 1    MWRNLAKHAYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRIG 60

Query: 319  ELLWDKEESVVKDCF---RSPI---GLNFTSRGYASVAEAVVNDSEEDVLEEVQXXXXXX 480
             L + ++E + +  F   ++P+   GL    +GYAS AEA+ ++ +   ++EVQ      
Sbjct: 61   VLSFQQDE-LGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIASEEDMSGVDEVQELVEEV 119

Query: 481  XXXXXXXXXXXXXXXXXXHTKYHMLRRRQVKIETEAWAQAAKEYKELLSDMCEHKLAPNL 660
                                K+++LRRRQ+K+ETEAW +AAKEY+ELLSDMCE KLAPNL
Sbjct: 120  NKGDKLEKQPKLIGGVA-QGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNL 178

Query: 661  PYMKSLFLGWFEPFKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMALITMHKLMGLLMT 840
            PY+KSLFLGWFEP +D I  EQDLCKQGKNRAAYAP FD LPADMMA+ITMHKLMGLLMT
Sbjct: 179  PYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMT 238

Query: 841  GGEHGCARVVQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXXXXXXXXXXQEKL 1020
            G  +G ARVVQA+  +GEAIE EVRI RF+                          QEKL
Sbjct: 239  GEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKE---QEKL 295

Query: 1021 RKRVTTLMKKQKLHQVRQIVRRQDDLKPWGQAAQAKVGSRLIELLLQTAYIQPPVDQIAD 1200
            RK+V+ LMKKQKL QVRQIV+RQDD KPWGQ A  KVGSRLIELL++TAYIQPP DQ+ D
Sbjct: 296  RKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGD 355

Query: 1201 TPPDIRPAFSHSLKTVSKDGQKSSRRFGVIECDPLVRQGLEKTARHMVIPYMPMLVPPIN 1380
             PPDIRPAF H+LKTV K+ QK +RR+GVIECDPLVR+GLEKTARHMVIPYMPMLVPP+N
Sbjct: 356  GPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLN 415

Query: 1381 WTGYEKGGYLFLPSYVMRTHGAKQQRQALKWTPKKQLEPVFEALNTLGNTKWRINKRVLG 1560
            WTGY+KG YLFLPSYVMR HGA+QQR+A+K  P+K LEP FEALNTLGNTKWRINKRVLG
Sbjct: 416  WTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLG 475

Query: 1561 VIDRIWASGGRXXXXXXXXXXXXXXXXXTEDEAELKRWRWKVKDAKKENSERHSQRCDIE 1740
            VIDRIWASGGR                 TEDEAE+++W+WKV+  KKENSERHSQRCDIE
Sbjct: 476  VIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIE 535

Query: 1741 LKLSVARKMKDESGFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEFAEGRPLGKSGLR 1920
            LKL+VARKMKDE GF+YPH++DFRGRAYPMHPYLNHLGSDLCRG LEFAEGRPLGKSGLR
Sbjct: 536  LKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLR 595

Query: 1921 WLKIHIANLYAGGVDKLSYDGRVSFTENHLDDIFDSADRPLEGKRWWLEAEDPFQCLAAC 2100
            WLKIH+AN+YAGGVDKLSY+GRV+FTENHL+DIFDSADRPLEG+RWWL AEDPFQCLA C
Sbjct: 596  WLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATC 655

Query: 2101 INLSEALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNLVAGDKPADVYSG 2280
            INLSEALRSSSPETTIS+MPVHQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVYSG
Sbjct: 656  INLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSG 715

Query: 2281 IAARVLEIMQQDAKRDPTNDADALRARLLVNQVNRKLVKQTVMTSVYGVTYIGAREQIKK 2460
            IAARVL+IMQ+DA++DP  + +ALRARLL++QV+RKLVKQTVMTSVYGVTYIGAR+QIK+
Sbjct: 716  IAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 775

Query: 2461 RLKER-GVIDDAELFGSACYAAKVTLTALGEMFQAARGIMSWLGECAKVIASENHPVRWT 2637
            RLKER  + D+ E+F ++CYAAK TLTALGEMF+AAR IMSWLG+CAKVIASENHPVRW 
Sbjct: 776  RLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASENHPVRWN 835

Query: 2638 TPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 2817
            TPLGLPVVQPYRKLGRHLIKTSLQVL+LQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT
Sbjct: 836  TPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 895

Query: 2818 AIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENLLESFQQSFPTLS 2997
            A+AC+KAGLNFAGVHDSYWTHACDVDEMNRILREKFVELY  PILENLLE FQ+SFPTL+
Sbjct: 896  AVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGFQKSFPTLN 955

Query: 2998 FPPLPERGDFDLNEVMKSPYFFN 3066
            FPPLPERGDFDL EV++SPYFFN
Sbjct: 956  FPPLPERGDFDLREVLESPYFFN 978


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score = 1362 bits (3525), Expect = 0.0
 Identities = 698/1034 (67%), Positives = 810/1034 (78%), Gaps = 30/1034 (2%)
 Frame = +1

Query: 55   MFSSK-PVFFSTNLNNKFDSFPSFYKPSQIFI--FNQTPIDMWRTFAKQLVSAR------ 207
            M S+K P+  +  LN   D      KP+ + I  ++ +PI MWR   KQL S        
Sbjct: 1    MSSTKTPISLTIKLNQFTD------KPTGLDINPYHNSPI-MWRNIIKQLSSRTPQKLLF 53

Query: 208  -------KFAKFSVNSFVE--TKFKPFELTKSGNFGFLEMGLCRNGELLWDKEESVVKDC 360
                    F  F  +S  +  TKF+        N   + MG    GE L   +E + +  
Sbjct: 54   SSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSN---IVMGFQNLGEYL-PGDEFLSRPL 109

Query: 361  FRSPIGLNFTSR-GYASVAEAVV---NDSEEDV--LEEV-----QXXXXXXXXXXXXXXX 507
             ++ +  NF  R  YASVAEAV     D+EEDV  ++EV     +               
Sbjct: 110  IKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRK 169

Query: 508  XXXXXXXXXHTKYHMLRRRQVKIETEAWAQAAKEYKELLSDMCEHKLAPNLPYMKSLFLG 687
                     H KY  L+RRQVK+ETEAW QAAKEYKELL DMCE KLAPNLPY+KSLFLG
Sbjct: 170  QRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLG 229

Query: 688  WFEPFKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMALITMHKLMGLLMTGGEHGCARV 867
            WFEP +DKI EEQ+LC QGK++AAYA  F  LPADMMA+ITMHKLMGLLMTGG+HG ARV
Sbjct: 230  WFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARV 289

Query: 868  VQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXXXXXXXXXXQEKLRKRVTTLMK 1047
            VQA+L +G+AIEQEVRI+ FL                          QEKLRK+VT LMK
Sbjct: 290  VQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQE---QEKLRKKVTNLMK 346

Query: 1048 KQKLHQVRQIVRRQDDLKPWGQAAQAKVGSRLIELLLQTAYIQPPVDQIADTPPDIRPAF 1227
            KQKL  V QIVRRQDD KPWGQ A+AKVGSRLI+LLLQTAYIQPP +Q+A  PPDIRPAF
Sbjct: 347  KQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAF 406

Query: 1228 SHSLKTVSKDGQKSSRRFGVIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYEKGGY 1407
             HS++TV+K+ + +SRR+G+I+CD LV +GLE+TARHMVIPYMPMLVPP+ WTGY+KGG+
Sbjct: 407  VHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGH 466

Query: 1408 LFLPSYVMRTHGAKQQRQALKWTPKKQLEPVFEALNTLGNTKWRINKRVLGVIDRIWASG 1587
            L+LPSYVMRTHGA+QQR+A+K   + QL+PVFEAL+TLGNTKWRINKRVL V+DRIWA G
Sbjct: 467  LYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGG 526

Query: 1588 GRXXXXXXXXXXXXXXXXXTEDEAELKRWRWKVKDAKKENSERHSQRCDIELKLSVARKM 1767
            GR                 TEDEA   +WRWKVK  KKEN ERHSQRCDIELKL+VARKM
Sbjct: 527  GRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKM 586

Query: 1768 KDESGFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEFAEGRPLGKSGLRWLKIHIANL 1947
            KDE  F+YPH+VDFRGRAYPMHP+LNHLGSD+CRG LEFAEGRPLG+SGLRWLKIH+ANL
Sbjct: 587  KDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANL 646

Query: 1948 YAGGVDKLSYDGRVSFTENHLDDIFDSADRPLEGKRWWLEAEDPFQCLAACINLSEALRS 2127
            +AGGV+KLS +GR+ FTENH+DDIFDS+D+PLEG+RWWL AEDPFQCLA CINLSEA+RS
Sbjct: 647  FAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRS 706

Query: 2128 SSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNLVAGDKPADVYSGIAARVLEIM 2307
            SSPET++S++PVHQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVYSGIAARVL+IM
Sbjct: 707  SSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIM 766

Query: 2308 QQDAKRDPTNDADALRARLLVNQVNRKLVKQTVMTSVYGVTYIGAREQIKKRLKERGVI- 2484
            ++DA+RDP    DA+RAR+LVNQV+RKLVKQTVMTSVYGVTYIGAR+QIK+RLKERG I 
Sbjct: 767  KRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIA 826

Query: 2485 DDAELFGSACYAAKVTLTALGEMFQAARGIMSWLGECAKVIASENHPVRWTTPLGLPVVQ 2664
            DD+ELFG+ACYAAKVTLTALGEMF+AAR IM+WLGECAK+IASEN PVRWTTPLGLPVVQ
Sbjct: 827  DDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQ 886

Query: 2665 PYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGL 2844
            PYRK+GRHLIKTSLQ+LTLQRET+KVMVKRQRTAFPPNF+HSLDGSHMMMTA+AC++AGL
Sbjct: 887  PYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGL 946

Query: 2845 NFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENLLESFQQSFPTLSFPPLPERGD 3024
            NFAGVHDSYWTHACDVD++NRILREKFVELYE PILE LLESFQ S+PTL FPPLPERGD
Sbjct: 947  NFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGD 1006

Query: 3025 FDLNEVMKSPYFFN 3066
            FD+ +V++SPYFFN
Sbjct: 1007 FDMRDVLESPYFFN 1020


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris] gi|17221595|dbj|BAB78465.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score = 1358 bits (3516), Expect = 0.0
 Identities = 696/1034 (67%), Positives = 809/1034 (78%), Gaps = 30/1034 (2%)
 Frame = +1

Query: 55   MFSSK-PVFFSTNLNNKFDSFPSFYKPSQIFI--FNQTPIDMWRTFAKQLVSAR------ 207
            M S+K P+  +  LN   D      KP+ + I  ++ +PI MWR   KQL S        
Sbjct: 1    MSSTKTPISLTIKLNQFTD------KPTGLDINPYHNSPI-MWRNIIKQLSSRTPQKLLF 53

Query: 208  -------KFAKFSVNSFVE--TKFKPFELTKSGNFGFLEMGLCRNGELLWDKEESVVKDC 360
                    F  F  +S  +  TKF+        N   + MG    GE L   +E + +  
Sbjct: 54   SSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSN---IVMGFQNLGEYL-PGDEFLSRPL 109

Query: 361  FRSPIGLNFTSR-GYASVAEAVV---NDSEEDV--LEEV-----QXXXXXXXXXXXXXXX 507
             ++ +  NF  R  YASVAEAV     D+EEDV  ++EV     +               
Sbjct: 110  IKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRK 169

Query: 508  XXXXXXXXXHTKYHMLRRRQVKIETEAWAQAAKEYKELLSDMCEHKLAPNLPYMKSLFLG 687
                     H KY  L+RRQVK+ETEAW QAAKEYKELL DMCE KLAPNLPY+KSLFLG
Sbjct: 170  QRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLG 229

Query: 688  WFEPFKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMALITMHKLMGLLMTGGEHGCARV 867
            WFEP +DKI EEQ+LC QGK++AAYA  F  LPADMMA+ITMHKLMGLLMTGG+HG ARV
Sbjct: 230  WFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARV 289

Query: 868  VQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXXXXXXXXXXQEKLRKRVTTLMK 1047
            VQA+L +G+AIEQEVRI+ FL                          QEKLRK+VT LMK
Sbjct: 290  VQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQE---QEKLRKKVTNLMK 346

Query: 1048 KQKLHQVRQIVRRQDDLKPWGQAAQAKVGSRLIELLLQTAYIQPPVDQIADTPPDIRPAF 1227
            KQKL  V QIVRRQDD KPWGQ A+AKVGSRLI+LLLQTAYIQPP +Q+A  PPDI PAF
Sbjct: 347  KQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPPAF 406

Query: 1228 SHSLKTVSKDGQKSSRRFGVIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYEKGGY 1407
             HS++TV+K+ + +SRR+G+I+CD LV +GLE+TARHMVIPYMPMLVPP+ WTGY+KGG+
Sbjct: 407  VHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGH 466

Query: 1408 LFLPSYVMRTHGAKQQRQALKWTPKKQLEPVFEALNTLGNTKWRINKRVLGVIDRIWASG 1587
            L+LPSYVMRTHGA+QQR+A+K   + QL+PVFEAL+TLGNTKWRINKRVL V+DRIWA G
Sbjct: 467  LYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGG 526

Query: 1588 GRXXXXXXXXXXXXXXXXXTEDEAELKRWRWKVKDAKKENSERHSQRCDIELKLSVARKM 1767
            GR                 TEDEA L +WRWKVK  KKEN ERHSQRCDIELKL+VARKM
Sbjct: 527  GRLADLVDRDDAPLPEEPDTEDEALLPKWRWKVKSVKKENRERHSQRCDIELKLAVARKM 586

Query: 1768 KDESGFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEFAEGRPLGKSGLRWLKIHIANL 1947
            KDE  F+YPH+VDFRGRAYPMHP+LNHLGSD+CRG LEFAEGRPLG+SGLRWLKIH+ANL
Sbjct: 587  KDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANL 646

Query: 1948 YAGGVDKLSYDGRVSFTENHLDDIFDSADRPLEGKRWWLEAEDPFQCLAACINLSEALRS 2127
            +AGGV+KLS +GR+ FTENH+DDIFDS+D+PLEG+RWWL AEDPFQCLA CINLSEA+RS
Sbjct: 647  FAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRS 706

Query: 2128 SSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNLVAGDKPADVYSGIAARVLEIM 2307
            SSPET++S++PVHQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPA+ YSGIAARVL+IM
Sbjct: 707  SSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPAEAYSGIAARVLDIM 766

Query: 2308 QQDAKRDPTNDADALRARLLVNQVNRKLVKQTVMTSVYGVTYIGAREQIKKRLKERGVI- 2484
            ++DA+RDP    DA+RAR+LVNQV+RKLVKQTVMTSVYGVTYIGAR+QIK+RLKERG I 
Sbjct: 767  KRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIA 826

Query: 2485 DDAELFGSACYAAKVTLTALGEMFQAARGIMSWLGECAKVIASENHPVRWTTPLGLPVVQ 2664
            DD+ELFG+ACYAAKVTLTALGEMF+AAR IM+WLGECAK+IASEN PVRWTTPLGLPVVQ
Sbjct: 827  DDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQ 886

Query: 2665 PYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGL 2844
            PYRK+GRHLIKTSLQ+LTLQRET+KVMVKRQRTAFPPNF+HSLDGSHMMMTA+AC++AGL
Sbjct: 887  PYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGL 946

Query: 2845 NFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENLLESFQQSFPTLSFPPLPERGD 3024
            NFAGVHDSYWTHACDVD++NRILREKFVELYE PILE LLESFQ S+PTL FPPLPERGD
Sbjct: 947  NFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGD 1006

Query: 3025 FDLNEVMKSPYFFN 3066
            FD+ +V++SPYFFN
Sbjct: 1007 FDMRDVLESPYFFN 1020


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score = 1357 bits (3512), Expect = 0.0
 Identities = 665/898 (74%), Positives = 750/898 (83%), Gaps = 7/898 (0%)
 Frame = +1

Query: 394  RGYASVAEAVVNDSEEDV------LEEVQXXXXXXXXXXXXXXXXXXXXXXXXHTKYHML 555
            R Y S AEA+V+ SEED+      +EE+                           KY+ L
Sbjct: 112  RSYGSAAEAIVSTSEEDIDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVG--KYNFL 169

Query: 556  RRRQVKIETEAWAQAAKEYKELLSDMCEHKLAPNLPYMKSLFLGWFEPFKDKIVEEQDLC 735
            RRRQ+K+ETEAW +AAKEY+ELL DMCE KLAPNLPYMKSLFLGWFEP +D I  EQ LC
Sbjct: 170  RRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLC 229

Query: 736  KQGKNRAAYAPQFDLLPADMMALITMHKLMGLLMTGGEHGCARVVQASLQVGEAIEQEVR 915
             +GKNR AYAP FD LPA+MMA+ITMHKLMGLLMTGG  G ARVVQA+  +GEAIE E R
Sbjct: 230  DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEAR 289

Query: 916  IYRFLXXXXXXXXXXXXXXXXXXXXXXXXXXQEKLRKRVTTLMKKQKLHQVRQIVRRQDD 1095
            I+RFL                          +E+LRK+V  LMKKQKL QVR+IV++QDD
Sbjct: 290  IHRFLEKTKKSNALSGDLEETPGDMMKE---RERLRKKVKILMKKQKLRQVRKIVKQQDD 346

Query: 1096 LKPWGQAAQAKVGSRLIELLLQTAYIQPPVDQIADTPPDIRPAFSHSLKTVSKDGQKSSR 1275
             KPWGQ    KVG RLI++L++TAYIQPP DQ+ D PPDIRPAF H+LKTV  +  K SR
Sbjct: 347  EKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSR 404

Query: 1276 RFGVIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYEKGGYLFLPSYVMRTHGAKQQ 1455
            R+GVI+CDPLVR+GL+KTARHMVIPYMPMLVPP +W GY+KGGYLFLPSY+MRTHGAKQQ
Sbjct: 405  RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQ 464

Query: 1456 RQALKWTPKKQLEPVFEALNTLGNTKWRINKRVLGVIDRIWASGGRXXXXXXXXXXXXXX 1635
            R+A+K  PKKQLEPVF+AL+TLGNTKWR+N++VLG++DRIWASGGR              
Sbjct: 465  REAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPE 524

Query: 1636 XXXTEDEAELKRWRWKVKDAKKENSERHSQRCDIELKLSVARKMKDESGFYYPHSVDFRG 1815
               TEDEAE+++W+WKVK  KKEN ERHSQRCDIELKL+VARKMKDE GFYYPH++DFRG
Sbjct: 525  APDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRG 584

Query: 1816 RAYPMHPYLNHLGSDLCRGALEFAEGRPLGKSGLRWLKIHIANLYAGGVDKLSYDGRVSF 1995
            RAYPMHPYLNHLGSDLCRG LEFAEGRPLG SGLRWLKIH+AN+Y GGVDKLSY+GRV+F
Sbjct: 585  RAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAF 644

Query: 1996 TENHLDDIFDSADRPLEGKRWWLEAEDPFQCLAACINLSEALRSSSPETTISYMPVHQDG 2175
            +ENHL+DIFDSA+RPLEGKRWWL AEDPFQCLA CIN++EALRS SPET ISYMP+HQDG
Sbjct: 645  SENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDG 704

Query: 2176 SCNGLQHYAALGRDKLGATAVNLVAGDKPADVYSGIAARVLEIMQQDAKRDPTNDADALR 2355
            SCNGLQHYAALGRDKLGA AVNLVAGDKPADVYSGIAARVL+IM++DA +DP ND + +R
Sbjct: 705  SCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMR 764

Query: 2356 ARLLVNQVNRKLVKQTVMTSVYGVTYIGAREQIKKRLKERGVI-DDAELFGSACYAAKVT 2532
            ARLL+NQV+RKLVKQTVMTSVYGVTYIGAR+QIKKRLKERGVI DD ELF +ACYAAK T
Sbjct: 765  ARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTT 824

Query: 2533 LTALGEMFQAARGIMSWLGECAKVIASENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQV 2712
            LTALGEMF+AAR IMSWLG+CAK+IA ENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+
Sbjct: 825  LTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQI 884

Query: 2713 LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDV 2892
            LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACK++GL+FAGVHDSYWTHACDV
Sbjct: 885  LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDV 944

Query: 2893 DEMNRILREKFVELYERPILENLLESFQQSFPTLSFPPLPERGDFDLNEVMKSPYFFN 3066
            D+MN+ILREKFVELY+ PILENLLESFQQSFP L FPPLPERGDFDL EV++SPYFFN
Sbjct: 945  DQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002