BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014215
         (889 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28722.3| unnamed protein product [Vitis vinifera]              407   e-111
ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containi...   407   e-111
ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|2...   357   2e-96
ref|XP_002524751.1| pentatricopeptide repeat-containing protein,...   353   2e-95
ref|NP_171809.1| pentatricopeptide repeat-containing protein [Ar...   336   4e-90

>emb|CBI28722.3| unnamed protein product [Vitis vinifera]
          Length = 1361

 Score =  407 bits (1045), Expect = e-111
 Identities = 209/296 (70%), Positives = 244/296 (82%)
 Frame = -2

Query: 888  FYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARNSLASATLTLEAVGTRKFSSPTVNSRQ 709
            FYNCLLTCHL FGDL SAS MVLEML KA++ARNSL++ATL  EAVG+   S+    S +
Sbjct: 901  FYNCLLTCHLKFGDLDSASHMVLEMLRKAREARNSLSAATLMFEAVGSGNTSTQEQVSEK 960

Query: 708  ARGLKKSDVLKQPIFVESSDLSYEEFCRDRNYVGLEAEAKETLDLLLENLQKRVELVTSE 529
            +   +KSD L+      S  +SYEEF RDRN++ LEAEAKE LD LL  LQ +VE +T+E
Sbjct: 961  SLSHRKSDGLENARPNTSLSISYEEFSRDRNFLKLEAEAKEILDRLLAKLQMQVEFITTE 1020

Query: 528  CGILQPTEKIYAKLVKSFFEAGKVRELAEFLIKANKEDVPVAIENSAVVHVISACISLGW 349
             GILQPTE+IY KLVK+F EAGK ++LAEFLIKA KED PV+ +NSA+VHVI++CI LGW
Sbjct: 1021 RGILQPTERIYVKLVKAFLEAGKTKQLAEFLIKAEKEDSPVSTDNSALVHVINSCILLGW 1080

Query: 348  LDQAHDLIDEMRFAGIRTGSSVYSALLKAYCKENRPLEISSLLRDARKEGIQLDSSCYEA 169
            LDQAHDL+DEMR AG+RTGSSVYS+LLKAYCK NR  EI+SLLRDARK G+QLDSSCYEA
Sbjct: 1081 LDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCKANRAGEITSLLRDARKAGVQLDSSCYEA 1140

Query: 168  LIQSRVLQKDTQGALHLFKEMKETKISKSCHEEFDMLVKGCAESGEAGVMAKLLQE 1
            LIQSRVLQKDT+GALH+FKEMKE KI +S H EF+MLVKGCAESGEAG+MAKLL E
Sbjct: 1141 LIQSRVLQKDTEGALHVFKEMKEAKIPRSGHREFEMLVKGCAESGEAGLMAKLLHE 1196


>ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
            mitochondrial-like [Vitis vinifera]
          Length = 784

 Score =  407 bits (1045), Expect = e-111
 Identities = 209/296 (70%), Positives = 244/296 (82%)
 Frame = -2

Query: 888  FYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARNSLASATLTLEAVGTRKFSSPTVNSRQ 709
            FYNCLLTCHL FGDL SAS MVLEML KA++ARNSL++ATL  EAVG+   S+    S +
Sbjct: 324  FYNCLLTCHLKFGDLDSASHMVLEMLRKAREARNSLSAATLMFEAVGSGNTSTQEQVSEK 383

Query: 708  ARGLKKSDVLKQPIFVESSDLSYEEFCRDRNYVGLEAEAKETLDLLLENLQKRVELVTSE 529
            +   +KSD L+      S  +SYEEF RDRN++ LEAEAKE LD LL  LQ +VE +T+E
Sbjct: 384  SLSHRKSDGLENARPNTSLSISYEEFSRDRNFLKLEAEAKEILDRLLAKLQMQVEFITTE 443

Query: 528  CGILQPTEKIYAKLVKSFFEAGKVRELAEFLIKANKEDVPVAIENSAVVHVISACISLGW 349
             GILQPTE+IY KLVK+F EAGK ++LAEFLIKA KED PV+ +NSA+VHVI++CI LGW
Sbjct: 444  RGILQPTERIYVKLVKAFLEAGKTKQLAEFLIKAEKEDSPVSTDNSALVHVINSCILLGW 503

Query: 348  LDQAHDLIDEMRFAGIRTGSSVYSALLKAYCKENRPLEISSLLRDARKEGIQLDSSCYEA 169
            LDQAHDL+DEMR AG+RTGSSVYS+LLKAYCK NR  EI+SLLRDARK G+QLDSSCYEA
Sbjct: 504  LDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCKANRAGEITSLLRDARKAGVQLDSSCYEA 563

Query: 168  LIQSRVLQKDTQGALHLFKEMKETKISKSCHEEFDMLVKGCAESGEAGVMAKLLQE 1
            LIQSRVLQKDT+GALH+FKEMKE KI +S H EF+MLVKGCAESGEAG+MAKLL E
Sbjct: 564  LIQSRVLQKDTEGALHVFKEMKEAKIPRSGHREFEMLVKGCAESGEAGLMAKLLHE 619


>ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|222856234|gb|EEE93781.1|
            predicted protein [Populus trichocarpa]
          Length = 750

 Score =  357 bits (917), Expect = 2e-96
 Identities = 188/296 (63%), Positives = 229/296 (77%)
 Frame = -2

Query: 888  FYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARNSLASATLTLEAVGTRKFSSPTVNSRQ 709
            FYNCLLTCHL FGDL +AS MVL ML KA++ARNS A+A L        K SSP   S +
Sbjct: 293  FYNCLLTCHLKFGDLDAASNMVLIMLRKAREARNSFATAALLFPI---DKKSSPGPVSEE 349

Query: 708  ARGLKKSDVLKQPIFVESSDLSYEEFCRDRNYVGLEAEAKETLDLLLENLQKRVELVTSE 529
            +   K+S  L      +   +SYEEF RDRN++ L+ EAKE L  LL  LQ +VEL+T+E
Sbjct: 350  SLSHKESGGLGNNRSNKDLTISYEEFYRDRNFLKLDTEAKEVLSTLLVELQMQVELITTE 409

Query: 528  CGILQPTEKIYAKLVKSFFEAGKVRELAEFLIKANKEDVPVAIENSAVVHVISACISLGW 349
             GILQPTEKIY KLVK+F E+GK +ELA FLIKA KED P + ++SA+VHVI++CISLGW
Sbjct: 410  RGILQPTEKIYVKLVKAFLESGKTKELAAFLIKAEKEDSPASNDDSALVHVINSCISLGW 469

Query: 348  LDQAHDLIDEMRFAGIRTGSSVYSALLKAYCKENRPLEISSLLRDARKEGIQLDSSCYEA 169
            LDQAHDL+DEM  AGIRT SSVY++LLKAYCK N+  E+++LLRDAR+ GIQLDSS Y A
Sbjct: 470  LDQAHDLLDEMCLAGIRTSSSVYASLLKAYCKANQTGEVTALLRDARRAGIQLDSSSYNA 529

Query: 168  LIQSRVLQKDTQGALHLFKEMKETKISKSCHEEFDMLVKGCAESGEAGVMAKLLQE 1
            LI+ RV+QKDT+ ALH+FKEMKE KI ++ H+EF+MLVKGCAE GEAG+MAKLLQE
Sbjct: 530  LIEFRVIQKDTKEALHIFKEMKEAKIPRTGHQEFEMLVKGCAEGGEAGLMAKLLQE 585


>ref|XP_002524751.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535935|gb|EEF37594.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 787

 Score =  353 bits (907), Expect = 2e-95
 Identities = 183/299 (61%), Positives = 233/299 (77%), Gaps = 3/299 (1%)
 Frame = -2

Query: 888  FYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARNSLASATLTLEAVGT---RKFSSPTVN 718
            FYNCLL+CHL FGDL SAS MVL+ML KAK+ARNSLA+A    +A       + S  +VN
Sbjct: 330  FYNCLLSCHLKFGDLDSASDMVLKMLWKAKEARNSLAAAKFVYQADSKSSHEQISPDSVN 389

Query: 717  SRQARGLKKSDVLKQPIFVESSDLSYEEFCRDRNYVGLEAEAKETLDLLLENLQKRVELV 538
             R+  GL KS   + P+      +S+ EF +DR+++ L+AEAK  LD LL  LQ +VEL+
Sbjct: 390  HREPDGLNKSRPNRTPM------ISHGEFLKDRDFLKLDAEAKGLLDSLLAKLQTQVELI 443

Query: 537  TSECGILQPTEKIYAKLVKSFFEAGKVRELAEFLIKANKEDVPVAIENSAVVHVISACIS 358
            T++ GILQPTEK+Y KLVK+F E+GK +ELA FL KA KED P + ++S +VHVI++CIS
Sbjct: 444  TTDRGILQPTEKVYVKLVKAFLESGKTKELAAFLYKAEKEDSPSSNDDSPLVHVINSCIS 503

Query: 357  LGWLDQAHDLIDEMRFAGIRTGSSVYSALLKAYCKENRPLEISSLLRDARKEGIQLDSSC 178
            L WLDQAHDL+DEMR AG+R  SSVY++LLKAYCK NR  E+ +LLRDARK GIQLDSSC
Sbjct: 504  LDWLDQAHDLLDEMRVAGVRMSSSVYASLLKAYCKANRAGEVKALLRDARKAGIQLDSSC 563

Query: 177  YEALIQSRVLQKDTQGALHLFKEMKETKISKSCHEEFDMLVKGCAESGEAGVMAKLLQE 1
            Y ALI+SRVL++DTQGALHLFKEMK+ KI ++ ++EF+MLVKGCA+ GEAG++AKLL+E
Sbjct: 564  YGALIKSRVLEEDTQGALHLFKEMKDAKIPRAGNQEFEMLVKGCADDGEAGLLAKLLRE 622


>ref|NP_171809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75200246|sp|Q9SA60.1|PPR6_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At1g03100, mitochondrial; Flags: Precursor
            gi|4587568|gb|AAD25799.1|AC006550_7 Contains PF|00637
            Clathrin 7-fold repeat. EST gb|AA721862 comes from this
            gene [Arabidopsis thaliana] gi|44917465|gb|AAS49057.1|
            At1g03100 [Arabidopsis thaliana]
            gi|332189408|gb|AEE27529.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 793

 Score =  336 bits (862), Expect = 4e-90
 Identities = 171/296 (57%), Positives = 226/296 (76%)
 Frame = -2

Query: 888  FYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARNSLASATLTLEAVGTRKFSSPTVNSRQ 709
            FYNCLL CHL FGDL SAS+MVLEML + K ARNSL +A L  +     +  +  V+ + 
Sbjct: 333  FYNCLLMCHLKFGDLESASKMVLEMLRRGKVARNSLGAAILEFDTADDGRLYTKRVSGKG 392

Query: 708  ARGLKKSDVLKQPIFVESSDLSYEEFCRDRNYVGLEAEAKETLDLLLENLQKRVELVTSE 529
            +  +K+ D  +  +    S + Y+EF RDR ++ LEAEAK+ L  LL  L  +VEL+TSE
Sbjct: 393  SE-VKEHDNPETRVVSIHSMIPYDEFSRDRKFLKLEAEAKDVLGALLAKLHVQVELITSE 451

Query: 528  CGILQPTEKIYAKLVKSFFEAGKVRELAEFLIKANKEDVPVAIENSAVVHVISACISLGW 349
             G+LQPTE+IY KL K+F E+GK++ELA+FL+KA  ED PV+ +NS +++VI+ACISLG 
Sbjct: 452  RGVLQPTEEIYVKLAKAFLESGKMKELAKFLLKAEHEDSPVSSDNSMLINVINACISLGM 511

Query: 348  LDQAHDLIDEMRFAGIRTGSSVYSALLKAYCKENRPLEISSLLRDARKEGIQLDSSCYEA 169
            LDQAHDL+DEMR AG+RTGSSVYS+LLKAYC  N+  E++SLLRDA+K GIQLDSSCYEA
Sbjct: 512  LDQAHDLLDEMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRDAQKAGIQLDSSCYEA 571

Query: 168  LIQSRVLQKDTQGALHLFKEMKETKISKSCHEEFDMLVKGCAESGEAGVMAKLLQE 1
            LIQS+V+Q DT GAL++FKEMKE KI +  +++F+ L+KGC  + EAG+M+KLL+E
Sbjct: 572  LIQSQVIQNDTHGALNVFKEMKEAKILRGGNQKFEKLLKGCEGNAEAGLMSKLLRE 627