BLASTX nr result
ID: Coptis24_contig00014179
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00014179
(897 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002521945.1| Poly(rC)-binding protein, putative [Ricinus ... 199 8e-58
ref|XP_002319087.1| predicted protein [Populus trichocarpa] gi|2... 197 2e-55
ref|XP_003554712.1| PREDICTED: insulin-like growth factor 2 mRNA... 188 7e-54
emb|CBI35182.3| unnamed protein product [Vitis vinifera] 190 3e-53
ref|XP_003521747.1| PREDICTED: KH domain-containing protein At4g... 185 3e-53
>ref|XP_002521945.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223538749|gb|EEF40349.1| Poly(rC)-binding protein,
putative [Ricinus communis]
Length = 548
Score = 199 bits (507), Expect(2) = 8e-58
Identities = 97/126 (76%), Positives = 112/126 (88%), Gaps = 1/126 (0%)
Frame = +1
Query: 1 NPQYMPTPRQHDNYYPPSDLPS-MEKQQHQGLSMYGRDASMGVHSSTNAQPPQAVLTQVT 177
NPQYMP PRQ +NYYPP+DLP MEKQ HQG+S YGR+A MGVH S+N+Q +++TQ+T
Sbjct: 368 NPQYMPPPRQIENYYPPADLPPPMEKQPHQGISAYGREAPMGVHGSSNSQAAPSMITQIT 427
Query: 178 QHMQIPLSYADAVIGNAGSNISYIRRVSGATITIQETRGVPGEMTVEINGSASQVQTAQQ 357
Q MQIPLSYADAVIG AG++ISYIRR SGAT+TIQETRGVPGEMTVEI+G+ASQVQTAQQ
Sbjct: 428 QQMQIPLSYADAVIGTAGTSISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQ 487
Query: 358 LIQNFM 375
LIQNFM
Sbjct: 488 LIQNFM 493
Score = 51.2 bits (121), Expect(2) = 8e-58
Identities = 25/44 (56%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Frame = +3
Query: 438 QNFMAEAASAQQKPANGPTD---NSYGSHGSVYSSPPSNTGRTG 560
QNFMAEA + Q G TD N Y +HGSVY+SPPSN G G
Sbjct: 490 QNFMAEAGAPTQAQTGGSTDQGYNPYAAHGSVYASPPSNPGHAG 533
>ref|XP_002319087.1| predicted protein [Populus trichocarpa] gi|222857463|gb|EEE95010.1|
predicted protein [Populus trichocarpa]
Length = 392
Score = 197 bits (501), Expect(2) = 2e-55
Identities = 96/126 (76%), Positives = 111/126 (88%), Gaps = 1/126 (0%)
Frame = +1
Query: 1 NPQYMPTPRQHDNYYPPSDLPS-MEKQQHQGLSMYGRDASMGVHSSTNAQPPQAVLTQVT 177
NPQYMP PRQ DNYYPP+D+P MEKQ HQG+S YGR+A MG H+S+NAQ +++TQ+T
Sbjct: 213 NPQYMPPPRQLDNYYPPADMPPLMEKQPHQGISAYGREAPMGSHASSNAQAAPSMITQIT 272
Query: 178 QHMQIPLSYADAVIGNAGSNISYIRRVSGATITIQETRGVPGEMTVEINGSASQVQTAQQ 357
Q MQIPLSYADAVIG AG++ISYIRR SGAT+TIQETRGVPG MTVEI+G+ASQVQTAQQ
Sbjct: 273 QQMQIPLSYADAVIGTAGASISYIRRASGATVTIQETRGVPGAMTVEISGTASQVQTAQQ 332
Query: 358 LIQNFM 375
LIQNFM
Sbjct: 333 LIQNFM 338
Score = 45.4 bits (106), Expect(2) = 2e-55
Identities = 23/43 (53%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 438 QNFMAEAASAQQKPANGPTDNSYG--SHGSVYSSPPSNTGRTG 560
QNFMAEA + Q G D Y SH SVY+SPPSN TG
Sbjct: 335 QNFMAEAGAPAQPQTGGAADQGYNPYSHSSVYASPPSNPEHTG 377
>ref|XP_003554712.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Glycine max]
Length = 446
Score = 188 bits (478), Expect(2) = 7e-54
Identities = 90/124 (72%), Positives = 110/124 (88%), Gaps = 1/124 (0%)
Frame = +1
Query: 7 QYMPTPRQHDNYYPPSDLPS-MEKQQHQGLSMYGRDASMGVHSSTNAQPPQAVLTQVTQH 183
QYMP PRQ D+YYPP+++P +++Q HQG+S YGRDAS+GVH+S+N Q +++TQ+TQ
Sbjct: 266 QYMPPPRQLDSYYPPAEMPPPVDRQPHQGISAYGRDASIGVHASSNTQSAPSIVTQITQQ 325
Query: 184 MQIPLSYADAVIGNAGSNISYIRRVSGATITIQETRGVPGEMTVEINGSASQVQTAQQLI 363
MQIPLSYADAVIG AG++ISYIRR SGAT+TIQE RGVPGEMTVEI+G+ASQVQTAQQLI
Sbjct: 326 MQIPLSYADAVIGTAGASISYIRRASGATVTIQEARGVPGEMTVEISGTASQVQTAQQLI 385
Query: 364 QNFM 375
QNFM
Sbjct: 386 QNFM 389
Score = 49.3 bits (116), Expect(2) = 7e-54
Identities = 26/49 (53%), Positives = 30/49 (61%), Gaps = 8/49 (16%)
Frame = +3
Query: 438 QNFMAEAASAQQKPANGPTD--------NSYGSHGSVYSSPPSNTGRTG 560
QNFMAEAA+A PA T NSY +HGS+Y+SPPSN G G
Sbjct: 386 QNFMAEAAAAAAAPAQPQTTVPAADQGYNSYPAHGSLYASPPSNPGHAG 434
>emb|CBI35182.3| unnamed protein product [Vitis vinifera]
Length = 511
Score = 190 bits (482), Expect(2) = 3e-53
Identities = 93/126 (73%), Positives = 108/126 (85%), Gaps = 1/126 (0%)
Frame = +1
Query: 1 NPQYMPTPRQHDNYYPPSDLPS-MEKQQHQGLSMYGRDASMGVHSSTNAQPPQAVLTQVT 177
NP YMP PRQ D+YYPP +LP +EKQ HQG+S YGR+ MG H+ ++AQP +++TQVT
Sbjct: 331 NPPYMPPPRQLDSYYPPPELPPPVEKQPHQGISAYGREVPMGGHAPSSAQPAPSMITQVT 390
Query: 178 QHMQIPLSYADAVIGNAGSNISYIRRVSGATITIQETRGVPGEMTVEINGSASQVQTAQQ 357
Q MQIPLSYADAVIG AG++ISYIRR SGAT+TIQETRGVPGEMTVEING+ASQVQ AQQ
Sbjct: 391 QQMQIPLSYADAVIGTAGASISYIRRASGATVTIQETRGVPGEMTVEINGTASQVQAAQQ 450
Query: 358 LIQNFM 375
LIQNFM
Sbjct: 451 LIQNFM 456
Score = 45.8 bits (107), Expect(2) = 3e-53
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Frame = +3
Query: 438 QNFMAEAASAQQKPANGPTD---NSYGSHGSVYSSPPSN 545
QNFMAEAA+ Q A G D NSY +HGS+Y+SP SN
Sbjct: 453 QNFMAEAAAPAQAQAGGSADQGYNSYAAHGSMYASPASN 491
>ref|XP_003521747.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 443
Score = 185 bits (470), Expect(2) = 3e-53
Identities = 89/124 (71%), Positives = 109/124 (87%), Gaps = 1/124 (0%)
Frame = +1
Query: 7 QYMPTPRQHDNYYPPSDLPS-MEKQQHQGLSMYGRDASMGVHSSTNAQPPQAVLTQVTQH 183
QYMP PRQ D+YYP +++P +++Q HQG+S YGRDAS+GVH+S+N Q +++TQ+TQ
Sbjct: 263 QYMPPPRQLDSYYPSAEMPPPVDRQPHQGISAYGRDASIGVHASSNTQSAPSIVTQITQQ 322
Query: 184 MQIPLSYADAVIGNAGSNISYIRRVSGATITIQETRGVPGEMTVEINGSASQVQTAQQLI 363
MQIPLSYADAVIG AG++ISYIRR SGAT+TIQE RGVPGEMTVEI+G+ASQVQTAQQLI
Sbjct: 323 MQIPLSYADAVIGTAGASISYIRRASGATVTIQEARGVPGEMTVEISGTASQVQTAQQLI 382
Query: 364 QNFM 375
QNFM
Sbjct: 383 QNFM 386
Score = 50.4 bits (119), Expect(2) = 3e-53
Identities = 27/49 (55%), Positives = 30/49 (61%), Gaps = 8/49 (16%)
Frame = +3
Query: 438 QNFMAEAASAQQKPANGPTD--------NSYGSHGSVYSSPPSNTGRTG 560
QNFMAEAA+A PA T NSY +HGSVY+SPPSN G G
Sbjct: 383 QNFMAEAAAAAAAPAQPQTTVPAADQGYNSYPAHGSVYASPPSNPGHAG 431