BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014173
         (368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containi...   178   5e-43
ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containi...   166   2e-39
ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containi...   165   3e-39
ref|XP_003625900.1| Pentatricopeptide repeat-containing protein ...   162   2e-38
ref|XP_002458547.1| hypothetical protein SORBIDRAFT_03g035530 [S...   142   3e-32

>ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 468

 Score =  178 bits (451), Expect = 5e-43
 Identities = 81/121 (66%), Positives = 103/121 (85%)
 Frame = -3

Query: 366 GMVQTGRDIFQSMMDGKYGFRPNTKHYACMVDILARAGCLDEAVKLIETMPYEPSKTMWG 187
           GMVQ GR IF S+M+GKY F P  KHYAC++D+LARAG L EA++++  MP+EP+K MWG
Sbjct: 325 GMVQMGRQIFGSLMNGKYEFFPGVKHYACVIDLLARAGILQEAMEVMTRMPFEPNKVMWG 384

Query: 186 ALLAGSKAHGNLDLCEYAAWKLVELDPGNGAYYVMLSNLYAEMGRWNEVENVRRLMEDRG 7
           A LAG +AHG+L+L E+AA KLVEL+PGNGAYYV+LSN+YAEMGRW++VE VRRLM++ G
Sbjct: 385 AFLAGCRAHGDLELSEFAARKLVELEPGNGAYYVLLSNIYAEMGRWSDVEKVRRLMKEGG 444

Query: 6   L 4
           L
Sbjct: 445 L 445


>ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 464

 Score =  166 bits (420), Expect = 2e-39
 Identities = 72/122 (59%), Positives = 101/122 (82%)
 Frame = -3

Query: 366 GMVQTGRDIFQSMMDGKYGFRPNTKHYACMVDILARAGCLDEAVKLIETMPYEPSKTMWG 187
           G+V +GR IF S++ G++GF P  KHY+CMVDILAR GC++EA  +I  MP+E +++MWG
Sbjct: 326 GLVNSGRQIFWSLIHGRFGFSPGIKHYSCMVDILARNGCIEEACVMINDMPFEATRSMWG 385

Query: 186 ALLAGSKAHGNLDLCEYAAWKLVELDPGNGAYYVMLSNLYAEMGRWNEVENVRRLMEDRG 7
           +LL GS+AHG+L++ E AA KLVE++P NG YYV+LSN+YAEMG+W+EVE VR +M++RG
Sbjct: 386 SLLTGSRAHGSLEVSEIAARKLVEMEPENGGYYVVLSNIYAEMGKWSEVEKVREIMKERG 445

Query: 6   LQ 1
           L+
Sbjct: 446 LK 447


>ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 464

 Score =  165 bits (418), Expect = 3e-39
 Identities = 71/122 (58%), Positives = 102/122 (83%)
 Frame = -3

Query: 366 GMVQTGRDIFQSMMDGKYGFRPNTKHYACMVDILARAGCLDEAVKLIETMPYEPSKTMWG 187
           G+V +GR IF S++ G++GF P  KHY+CMVDILAR GC++EA  +I+ MP+E +++MWG
Sbjct: 326 GLVNSGRQIFWSLIHGRFGFSPGIKHYSCMVDILARNGCIEEACVMIKDMPFEATRSMWG 385

Query: 186 ALLAGSKAHGNLDLCEYAAWKLVELDPGNGAYYVMLSNLYAEMGRWNEVENVRRLMEDRG 7
           +LL GS+AHG+L++ E AA +LVE++P NG YYV+LSN+YAEMG+W+EVE VR +M++RG
Sbjct: 386 SLLTGSRAHGSLEVSEIAARRLVEMEPENGGYYVVLSNIYAEMGKWSEVEKVREIMKERG 445

Query: 6   LQ 1
           L+
Sbjct: 446 LK 447


>ref|XP_003625900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355500915|gb|AES82118.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 467

 Score =  162 bits (411), Expect = 2e-38
 Identities = 75/121 (61%), Positives = 96/121 (79%)
 Frame = -3

Query: 366 GMVQTGRDIFQSMMDGKYGFRPNTKHYACMVDILARAGCLDEAVKLIETMPYEPSKTMWG 187
           G+V+ GR IF  ++DGKYGF PN KHYACMVD+LARAG L EA  +I+ MP+EP+  MWG
Sbjct: 325 GLVEKGRFIFSMLVDGKYGFLPNVKHYACMVDLLARAGQLQEAFDIIKCMPFEPTAAMWG 384

Query: 186 ALLAGSKAHGNLDLCEYAAWKLVELDPGNGAYYVMLSNLYAEMGRWNEVENVRRLMEDRG 7
           +LL GSK+  +L+  E+AA KLVEL+P N AYYV LSNLYAE GRW++VE +R +M++RG
Sbjct: 385 SLLLGSKSRDDLEFSEFAATKLVELEPYNTAYYVQLSNLYAEAGRWSDVERIRGMMKERG 444

Query: 6   L 4
           L
Sbjct: 445 L 445


>ref|XP_002458547.1| hypothetical protein SORBIDRAFT_03g035530 [Sorghum bicolor]
           gi|241930522|gb|EES03667.1| hypothetical protein
           SORBIDRAFT_03g035530 [Sorghum bicolor]
          Length = 483

 Score =  142 bits (358), Expect = 3e-32
 Identities = 62/121 (51%), Positives = 87/121 (71%)
 Frame = -3

Query: 366 GMVQTGRDIFQSMMDGKYGFRPNTKHYACMVDILARAGCLDEAVKLIETMPYEPSKTMWG 187
           G+V  GR IF  ++ GKYGF+P  KH+ CM+D+L+R+G LD+A +++E MP +P   +WG
Sbjct: 335 GLVDIGRKIFNLIVQGKYGFQPGIKHFGCMIDLLSRSGHLDDAFRVLEAMPSQPDAVIWG 394

Query: 186 ALLAGSKAHGNLDLCEYAAWKLVELDPGNGAYYVMLSNLYAEMGRWNEVENVRRLMEDRG 7
            LL G K  G+ DL EY   +LVEL+PGN ++YV L+NLYAE GRW E E V + M+++G
Sbjct: 395 LLLQGCKVRGDTDLSEYVTMRLVELEPGNASHYVTLANLYAETGRWLEAEEVLKGMKEKG 454

Query: 6   L 4
           L
Sbjct: 455 L 455