BLASTX nr result
ID: Coptis24_contig00014073
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00014073 (630 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis v... 98 1e-18 dbj|BAD69127.1| putative DNA topoisomerase I [Oryza sativa Japon... 95 1e-17 gb|EEC80401.1| hypothetical protein OsI_22539 [Oryza sativa Indi... 95 1e-17 gb|EAZ36631.1| hypothetical protein OsJ_20977 [Oryza sativa Japo... 95 1e-17 ref|XP_002334451.1| predicted protein [Populus trichocarpa] gi|2... 93 3e-17 >ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera] Length = 1185 Score = 97.8 bits (242), Expect = 1e-18 Identities = 66/155 (42%), Positives = 87/155 (56%), Gaps = 6/155 (3%) Frame = -3 Query: 448 KPNLTKLATPTGDAKVNGSKQAFNSEKASVTKIAAQSVQASEILPAGDK----VDKSNLT 281 K +T + A+ +K + + K+++TK +QS QAS+ G+K +D S T Sbjct: 269 KEQVTSTDASSDVAQKKSTKSSSEANKSNITK-KSQSPQASKNNSTGNKPVEALDSSVST 327 Query: 280 PGNSKKTVEXXXXXXXXXXXXXVHMKPDKAPAV--LVEVKKRPLEKGLRSLYPPTGKSVV 107 SKK K + + +++RPL+K LYP +GKSVV Sbjct: 328 KSQSKKATGSSNKKGKSPKVANESPKKQTVHTMGKIKSLEQRPLKK----LYPSSGKSVV 383 Query: 106 VVESLTKAKVIQKYLGDMYEVLPSYGHVRDLAGRS 2 VVES+TKAKVIQ YLGDMYEVLPSYGHVRDLAGRS Sbjct: 384 VVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAGRS 418 >dbj|BAD69127.1| putative DNA topoisomerase I [Oryza sativa Japonica Group] gi|55297350|dbj|BAD69191.1| putative DNA topoisomerase I [Oryza sativa Japonica Group] Length = 896 Score = 94.7 bits (234), Expect = 1e-17 Identities = 71/181 (39%), Positives = 92/181 (50%), Gaps = 13/181 (7%) Frame = -3 Query: 505 SCTTVPSGDDKISGSKQAKKPNLTKLATPTGDAKVNGSKQA---FNSEKASVTKIAAQSV 335 +C T+ + + S SK++K TK T + + K+A EKAS TK +SV Sbjct: 156 ACGTI-TDEASTSTSKRSKSGTGTKKTTTRRKSPTSRKKEASEDMKEEKAS-TKKQRKSV 213 Query: 334 QASEILPAGDKV----DKSNLTPGNSKKTVEXXXXXXXXXXXXXVHMKPDKAP------A 185 + S K+ ++S SKK + + A A Sbjct: 214 KTSTAATKSRKIGVNQEESKSDISKSKKAADSSKEKKTSSRSKKSSKAKESAASNATAKA 273 Query: 184 VLVEVKKRPLEKGLRSLYPPTGKSVVVVESLTKAKVIQKYLGDMYEVLPSYGHVRDLAGR 5 + + +K L LYPPT KSV+VVES+TKAKVIQKYLGDMYEVLPSYGHVRDLAGR Sbjct: 274 EICTMTSVSEQKPLVPLYPPTAKSVLVVESVTKAKVIQKYLGDMYEVLPSYGHVRDLAGR 333 Query: 4 S 2 S Sbjct: 334 S 334 >gb|EEC80401.1| hypothetical protein OsI_22539 [Oryza sativa Indica Group] Length = 888 Score = 94.7 bits (234), Expect = 1e-17 Identities = 71/181 (39%), Positives = 92/181 (50%), Gaps = 13/181 (7%) Frame = -3 Query: 505 SCTTVPSGDDKISGSKQAKKPNLTKLATPTGDAKVNGSKQA---FNSEKASVTKIAAQSV 335 +C T+ + + S SK++K TK T + + K+A EKAS TK +SV Sbjct: 156 ACGTI-TDEASTSTSKRSKSGTGTKKTTTRRKSPTSRKKEASEDMKEEKAS-TKKQRKSV 213 Query: 334 QASEILPAGDKV----DKSNLTPGNSKKTVEXXXXXXXXXXXXXVHMKPDKAP------A 185 + S K+ ++S SKK + + A A Sbjct: 214 KTSTAATKSRKIGVNQEESKSDISKSKKAADSSKEKKTSSRSKKSSKAKESAASNATAKA 273 Query: 184 VLVEVKKRPLEKGLRSLYPPTGKSVVVVESLTKAKVIQKYLGDMYEVLPSYGHVRDLAGR 5 + + +K L LYPPT KSV+VVES+TKAKVIQKYLGDMYEVLPSYGHVRDLAGR Sbjct: 274 EICTMTSVSEQKPLVPLYPPTAKSVLVVESVTKAKVIQKYLGDMYEVLPSYGHVRDLAGR 333 Query: 4 S 2 S Sbjct: 334 S 334 >gb|EAZ36631.1| hypothetical protein OsJ_20977 [Oryza sativa Japonica Group] Length = 1180 Score = 94.7 bits (234), Expect = 1e-17 Identities = 71/181 (39%), Positives = 92/181 (50%), Gaps = 13/181 (7%) Frame = -3 Query: 505 SCTTVPSGDDKISGSKQAKKPNLTKLATPTGDAKVNGSKQA---FNSEKASVTKIAAQSV 335 +C T+ + + S SK++K TK T + + K+A EKAS TK +SV Sbjct: 156 ACGTI-TDEASTSTSKRSKSGTGTKKTTTRRKSPTSRKKEASEDMKEEKAS-TKKQRKSV 213 Query: 334 QASEILPAGDKV----DKSNLTPGNSKKTVEXXXXXXXXXXXXXVHMKPDKAP------A 185 + S K+ ++S SKK + + A A Sbjct: 214 KTSTAATKSRKIGVNQEESKSDISKSKKAADSSKEKKTSSRSKKSSKAKESAASNATAKA 273 Query: 184 VLVEVKKRPLEKGLRSLYPPTGKSVVVVESLTKAKVIQKYLGDMYEVLPSYGHVRDLAGR 5 + + +K L LYPPT KSV+VVES+TKAKVIQKYLGDMYEVLPSYGHVRDLAGR Sbjct: 274 EICTMTSVSEQKPLVPLYPPTAKSVLVVESVTKAKVIQKYLGDMYEVLPSYGHVRDLAGR 333 Query: 4 S 2 S Sbjct: 334 S 334 >ref|XP_002334451.1| predicted protein [Populus trichocarpa] gi|222872210|gb|EEF09341.1| predicted protein [Populus trichocarpa] Length = 780 Score = 93.2 bits (230), Expect = 3e-17 Identities = 71/168 (42%), Positives = 92/168 (54%), Gaps = 8/168 (4%) Frame = -3 Query: 481 DDKISGSKQAK-KPNLTKLATPTGDAK----VNGSKQAFNSEKASVTKIAAQSVQASEIL 317 + K S SK+ K + + T ++ AK + K++ S+ V A+Q +A+E + Sbjct: 202 EKKESKSKKNKGEASFTAVSEKAAGAKSMTTTSQLKKSLPSKSGQVAARASQK-KATEEM 260 Query: 316 PAGDKVDKSNLTPGNS--KKTVEXXXXXXXXXXXXXVHMKPDKAPAVLVEVKKRPLEKG- 146 P G +SN GNS K+T + KP K K +P +G Sbjct: 261 PNGSTKQQSNKKNGNSSIKRTTKKAVNGSAEK------QKPQKIG------KLQPFAQGK 308 Query: 145 LRSLYPPTGKSVVVVESLTKAKVIQKYLGDMYEVLPSYGHVRDLAGRS 2 L+SLYP GK VVVVES+TKAKVIQ YLGDMYEVLPSYGHVRDLA RS Sbjct: 309 LKSLYPSAGKCVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARS 356