BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00014035
         (584 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29825.3| unnamed protein product [Vitis vinifera]              152   4e-35
ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containi...   152   4e-35
ref|XP_002529510.1| pentatricopeptide repeat-containing protein,...   146   3e-33
ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containi...   121   1e-25
ref|XP_003613698.1| Pentatricopeptide repeat-containing protein ...   117   1e-24

>emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  152 bits (384), Expect = 4e-35
 Identities = 79/165 (47%), Positives = 110/165 (66%)
 Frame = -3

Query: 579  LPDHNNERLKLMEKNVDLGNIEVAVHGVLEMDMKCKVVDPSLYNIFLTGLCQAGMLDEAL 400
            LP   +E LKL E++ + G +E AV  +LEM+ K    + + Y I+L GLCQA   +EAL
Sbjct: 553  LPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEAL 612

Query: 399  KIFNVLEECKVSVTPPSCVYLINCLCHEKKVDLALNVFLYTLEMGVRLMPPVCNRLINSL 220
            KIF VL+EC++ V PPSCV LIN LC +  +++A+++FLYTLE G  LMP +CN+L+ SL
Sbjct: 613  KIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSL 672

Query: 219  YSQDKFKDMLDIVARMESAGYKLDIHLSRVSKALLRNCNSMQDMK 85
              QDK K  LD++ RM SAGY LD +L    K+ L +    Q+M+
Sbjct: 673  ILQDKMKHALDLLNRMNSAGYDLDEYLHHRIKSYLLSVWKAQEME 717


>ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like
            [Vitis vinifera]
          Length = 798

 Score =  152 bits (384), Expect = 4e-35
 Identities = 79/165 (47%), Positives = 110/165 (66%)
 Frame = -3

Query: 579  LPDHNNERLKLMEKNVDLGNIEVAVHGVLEMDMKCKVVDPSLYNIFLTGLCQAGMLDEAL 400
            LP   +E LKL E++ + G +E AV  +LEM+ K    + + Y I+L GLCQA   +EAL
Sbjct: 629  LPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEAL 688

Query: 399  KIFNVLEECKVSVTPPSCVYLINCLCHEKKVDLALNVFLYTLEMGVRLMPPVCNRLINSL 220
            KIF VL+EC++ V PPSCV LIN LC +  +++A+++FLYTLE G  LMP +CN+L+ SL
Sbjct: 689  KIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSL 748

Query: 219  YSQDKFKDMLDIVARMESAGYKLDIHLSRVSKALLRNCNSMQDMK 85
              QDK K  LD++ RM SAGY LD +L    K+ L +    Q+M+
Sbjct: 749  ILQDKMKHALDLLNRMNSAGYDLDEYLHHRIKSYLLSVWKAQEME 793


>ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223531026|gb|EEF32879.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 804

 Score =  146 bits (368), Expect = 3e-33
 Identities = 79/157 (50%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
 Frame = -3

Query: 579  LPDHNNERLKLMEKNVDLGNIEVAVHGVLEMDMKCKVVDPSLYNIFLTGLCQAGMLDEAL 400
            +P  ++E LK +E+N + G +E AV G+LEMD K      + Y I+L GLCQAG L+EAL
Sbjct: 624  IPGRDSEVLKSVEENFEKGEVEEAVRGLLEMDFKLNDFQLAPYTIWLIGLCQAGRLEEAL 683

Query: 399  KIFNVLEECKVSVTPPSCVYLINCLCHEKKVDLALNVFLYTLEMGVRLMPPVCNRLINSL 220
            KIF  LEE  V VTPPSCV LI  L     +DLA  +FLYT++ G  LMP +CNRL+ SL
Sbjct: 684  KIFFTLEEHNVLVTPPSCVKLIYRLLKVGNLDLAAEIFLYTIDKGYMLMPRICNRLLKSL 743

Query: 219  Y-SQDKFKDMLDIVARMESAGYKLDIHLSRVSKALLR 112
              S+DK     D+++RM+S GY LD HL + +K LL+
Sbjct: 744  LRSEDKRNRAFDLLSRMKSLGYDLDSHLHQTTKFLLQ 780


>ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like
            [Cucumis sativus]
          Length = 783

 Score =  121 bits (303), Expect = 1e-25
 Identities = 63/152 (41%), Positives = 100/152 (65%)
 Frame = -3

Query: 564  NERLKLMEKNVDLGNIEVAVHGVLEMDMKCKVVDPSLYNIFLTGLCQAGMLDEALKIFNV 385
            +E+++++ ++ D   ++ A+  +LEMD+K K  D + Y IFL GL QA    EA  IF+V
Sbjct: 631  DEKVRVVAESFDNEELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQAKRDCEAFAIFSV 690

Query: 384  LEECKVSVTPPSCVYLINCLCHEKKVDLALNVFLYTLEMGVRLMPPVCNRLINSLYSQDK 205
            L++ K++++  SCV LI  LC  + +D+A++VFL+TLE G RLMPP+CN+L+ +L   D+
Sbjct: 691  LKDFKMNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLMPPICNQLLCNLLHLDR 750

Query: 204  FKDMLDIVARMESAGYKLDIHLSRVSKALLRN 109
              D L +  RME++GY L  HL   +K  L +
Sbjct: 751  KDDALFLANRMEASGYDLGAHLHYRTKLHLHD 782


>ref|XP_003613698.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355515033|gb|AES96656.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 749

 Score =  117 bits (294), Expect = 1e-24
 Identities = 61/158 (38%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
 Frame = -3

Query: 579  LPDHNNERLKLMEKNVDLGNIEVAVHGVLEMDMKCKVVDPSLYNIFLTGLCQAGMLDEAL 400
            LP  +N+ +  +EK +    +E  + G+LE+D K +    + Y I L G CQAG + EAL
Sbjct: 578  LPSRDNDSISALEKYLFGEKLEQVIRGLLELDFKARDFKLAPYTILLIGFCQAGKVSEAL 637

Query: 399  KIFNVLEECKVSVTPPSCVYLINCLCHEKKVDLALNVFLYTLEMGVRLMPPVCNRLINS- 223
             I +VL+E  + +   SCV+LI  LC E+++  A+ +FLY+LE G  L P +CN L+   
Sbjct: 638  IILSVLDEFNIKINATSCVHLIRGLCKEQRLHDAVKIFLYSLEKGFMLKPMICNHLLTCL 697

Query: 222  LYSQDKFKDMLDIVARMESAGYKLDIHLSRVSKALLRN 109
            LYS+D  + ++D++ RMES GY+L+      + ALL++
Sbjct: 698  LYSRDYKECVVDLIGRMESFGYRLNSEEFATTLALLQH 735