BLASTX nr result
ID: Coptis24_contig00013980
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00013980
(1959 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266408.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 662 0.0
ref|XP_002312702.1| predicted protein [Populus trichocarpa] gi|2... 618 e-174
ref|XP_003553228.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 610 e-172
ref|XP_003530661.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 595 e-167
sp|Q6H601.2|RH22_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA ... 594 e-167
>ref|XP_002266408.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 22 [Vitis vinifera]
gi|296086509|emb|CBI32098.3| unnamed protein product
[Vitis vinifera]
Length = 593
Score = 662 bits (1708), Expect = 0.0
Identities = 339/529 (64%), Positives = 409/529 (77%), Gaps = 1/529 (0%)
Frame = +1
Query: 238 DNGESFYADESVTWNSIGVSEKLSRSLSNIGLHKPSLIQATCIPSILSEKDVVVAAETGS 417
+ E+F+AD+ V+W S+GVS++L+R+LS IG+ +PSL+QA CIP ILS DVVVAAETGS
Sbjct: 73 NGAETFFADQGVSWASLGVSDRLTRALSTIGIERPSLVQAACIPYILSGNDVVVAAETGS 132
Query: 418 GKTHGYLVPLFDKMLNFRGHSAGTDDGREHSQPLHFSLVLCPNVMLCEQVVRMANCINND 597
GKTHGYLVPL DK+ S +E LVLCPNVMLCEQVV+MANC+ D
Sbjct: 133 GKTHGYLVPLIDKLCGTPNDSVDASTDQESRHLHQLCLVLCPNVMLCEQVVQMANCLCGD 192
Query: 598 SGQPLLQVSAVCGRQGWPVSQPDILVSTPAALLNYLYALDPERRRRSDFLRGLKYVVFDE 777
+G+PLL+V AVCGRQGWPV +PDI+VSTPAA LN L A+DPE++RRS+FLRG+K VVFDE
Sbjct: 193 NGEPLLRVVAVCGRQGWPVKEPDIIVSTPAAFLNNLNAIDPEKQRRSNFLRGVKCVVFDE 252
Query: 778 ADMLLCGSFQNQVIRLINMFRFEEKVLSRLKNSVVKSSIESNAPTLEQLEAEFD-DELQS 954
ADMLLCGSFQNQVIRLI+M RF+EK+LSR+K SV +E + ++ +E + DE ++
Sbjct: 253 ADMLLCGSFQNQVIRLIDMLRFDEKILSRIKKSVPDKQMELESDSMLHFYSESEKDEEET 312
Query: 955 DLPXXXXXXXXXXXXXXXXVEGVVRLEDPKGNEPKPNRHKDWIRARKIYERSKQYIFVAA 1134
+ VEG E G+ K KDW R RK YERSKQYIFVAA
Sbjct: 313 EEQTEIISDEEENVVGEPVVEGFTE-EIEVGSIKK----KDWRRVRKNYERSKQYIFVAA 367
Query: 1135 TLPLNGKKTAGGVLKRMFPDANWASGSYLHCHNPRLEQRWIEVTIDTQVDVLIDAVEQGL 1314
TLP+NGKKTAGGVLKRMFPDA+W SG YLHCHNPRLEQ+WIEVT+DTQVD LIDAV+QG
Sbjct: 368 TLPVNGKKTAGGVLKRMFPDAHWVSGGYLHCHNPRLEQKWIEVTVDTQVDALIDAVKQGF 427
Query: 1315 RSKELNPEIGVCRTLVFANTVDAVEAVAKILRNVGVECSCYHSDSSLEERSKNLVDFRER 1494
RSK L+ +GV RT+VFANTV+AVEA++KIL GVEC YH DSSLEER+K LVDF+++
Sbjct: 428 RSKVLDSGVGVSRTMVFANTVEAVEAISKILHRAGVECFRYHRDSSLEERAKTLVDFQQK 487
Query: 1495 GGVLVCTDAAARGLDVLNVQHVIQAEFASSAVDFIHRIGRTARAGQSGLVTSLYTKSNRD 1674
GGVLVCTD+AARGLD+ N+ HVIQA+FA+SA+DF+HR+GRTARAGQ GLVTSLYT+SNRD
Sbjct: 488 GGVLVCTDSAARGLDIPNISHVIQADFATSALDFLHRVGRTARAGQFGLVTSLYTESNRD 547
Query: 1675 LVAAVHQAGNLGQPVEKAFSRKRGFRNKLKKRGSKGVTVEATAEDRVLA 1821
LVAA+ QA LGQPV+ AFSRKR FRNKLKKRG+ + E+RVLA
Sbjct: 548 LVAAIRQADKLGQPVDAAFSRKRSFRNKLKKRGTNKL---GDVEERVLA 593
>ref|XP_002312702.1| predicted protein [Populus trichocarpa] gi|222852522|gb|EEE90069.1|
predicted protein [Populus trichocarpa]
Length = 585
Score = 618 bits (1593), Expect = e-174
Identities = 331/548 (60%), Positives = 396/548 (72%), Gaps = 2/548 (0%)
Frame = +1
Query: 136 LFYLKPYKPSRSIRRNYAANVLSVKEITXXXXXXDNGESFYADESVTWNSIGVSEKLSRS 315
LF+L P R+IR A V K E+F++D +V+W S+G+S LSR+
Sbjct: 40 LFFLNP----RAIRGFATAVVAETKAAETK-----TAETFFSDHAVSWASLGLSHPLSRA 90
Query: 316 LSNIGLHKPSLIQATCIPSILSEKDVVVAAETGSGKTHGYLVPLFDKMLNFRGHSAGTDD 495
LSN G +PSL+QA IPSILS KDVV+AAETGSGKTH YLVPL + L+ G
Sbjct: 91 LSNTGFSRPSLVQAAAIPSILSGKDVVIAAETGSGKTHSYLVPLINNRLSASASQQGLTP 150
Query: 496 GREHSQPLHFSLVLCPNVMLCEQVVRMANCINNDSGQPLLQVSAVCGRQGWPVSQPDILV 675
P SLVLCPNV+LC+QVVRMA+ + +D G PLL+V+AVCGRQGWPV+QPDI+V
Sbjct: 151 -----TPSGLSLVLCPNVLLCDQVVRMASGLCDDDGHPLLKVAAVCGRQGWPVNQPDIIV 205
Query: 676 STPAALLNYLYALDPERRRRSDFLRGLKYVVFDEADMLLCGSFQNQVIRLINMFRFEEKV 855
STPAALLN + DP+++ RS F+RG+KYVVFDEADMLLCG FQNQVIRLINM RF+EK
Sbjct: 206 STPAALLNNI---DPKKQSRSSFIRGVKYVVFDEADMLLCGGFQNQVIRLINMLRFDEKQ 262
Query: 856 LSRLKNSVVKSSIESNAPTLEQLEAE-FDDELQSDLPXXXXXXXXXXXXXXXXVEGVVRL 1032
LSR S V+ + +LE+ +E +D+ +S L +
Sbjct: 263 LSRANKSAVEVPQGIGSDSLERFSSEDVEDQQESVLEEDEEDQQESVLEEDEDFVAEFEV 322
Query: 1033 EDPKGN-EPKPNRHKDWIRARKIYERSKQYIFVAATLPLNGKKTAGGVLKRMFPDANWAS 1209
ED K E KDW R RK YERSKQYIFVAATLP+NGKKTAG +LKRMFPDANW S
Sbjct: 323 EDIKEEIEAGSIDRKDWRRVRKNYERSKQYIFVAATLPVNGKKTAGAMLKRMFPDANWIS 382
Query: 1210 GSYLHCHNPRLEQRWIEVTIDTQVDVLIDAVEQGLRSKELNPEIGVCRTLVFANTVDAVE 1389
G+YLHCHNPRLE++W+EVT+DTQ+ LI+AV+QG RS L+ GV RT+VFANTV+AVE
Sbjct: 383 GTYLHCHNPRLERKWVEVTVDTQLHALIEAVKQGFRSDMLDYGAGVSRTMVFANTVEAVE 442
Query: 1390 AVAKILRNVGVECSCYHSDSSLEERSKNLVDFRERGGVLVCTDAAARGLDVLNVQHVIQA 1569
AVAKIL G+EC YH DSSLEER+K LVDFRE+GGV VCTDAAARG+D+ +V HVIQA
Sbjct: 443 AVAKILGKAGIECFRYHKDSSLEERAKTLVDFREKGGVFVCTDAAARGVDIPDVSHVIQA 502
Query: 1570 EFASSAVDFIHRIGRTARAGQSGLVTSLYTKSNRDLVAAVHQAGNLGQPVEKAFSRKRGF 1749
+FA+SAVDF+HR+GRTARAG GLVTSLYT+SNRDLV A+ QA LGQPVE AFSRKR F
Sbjct: 503 DFATSAVDFLHRVGRTARAGHHGLVTSLYTESNRDLVDAIRQAEKLGQPVETAFSRKRSF 562
Query: 1750 RNKLKKRG 1773
RNKLKKRG
Sbjct: 563 RNKLKKRG 570
>ref|XP_003553228.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 22-like [Glycine max]
Length = 579
Score = 610 bits (1574), Expect = e-172
Identities = 312/561 (55%), Positives = 413/561 (73%)
Frame = +1
Query: 136 LFYLKPYKPSRSIRRNYAANVLSVKEITXXXXXXDNGESFYADESVTWNSIGVSEKLSRS 315
LF +P+ P+ + V +V + + ++F+A+E+V+W+S+G+S+ +SR+
Sbjct: 34 LFKPRPFSPTTPRQAQTRTFVSAVASSSSAAHGSNGRDTFFAEENVSWSSLGLSDTISRA 93
Query: 316 LSNIGLHKPSLIQATCIPSILSEKDVVVAAETGSGKTHGYLVPLFDKMLNFRGHSAGTDD 495
LSNIGL++PSL+QA+ +PS+L KDV++AAETGSGKT+ YLVPL DK+ + + HS
Sbjct: 94 LSNIGLNRPSLVQASSVPSVLLGKDVIIAAETGSGKTYSYLVPLIDKLRDAQEHSLHAVL 153
Query: 496 GREHSQPLHFSLVLCPNVMLCEQVVRMANCINNDSGQPLLQVSAVCGRQGWPVSQPDILV 675
++ + P + LVLCPNV LCEQVVRMAN + D G+ ++ V+A+CG+QGWP+ +PD++V
Sbjct: 154 DQKVTSPQNVLLVLCPNVQLCEQVVRMANSLCRDDGETIVSVAAICGKQGWPIREPDVIV 213
Query: 676 STPAALLNYLYALDPERRRRSDFLRGLKYVVFDEADMLLCGSFQNQVIRLINMFRFEEKV 855
+TPAALLNY+ D +R RR +F+RG+KYVVFDEAD+LLCGSFQN+VIRLIN+ RF+EK+
Sbjct: 214 TTPAALLNYV---DLDRTRRMEFMRGVKYVVFDEADLLLCGSFQNKVIRLINLLRFDEKL 270
Query: 856 LSRLKNSVVKSSIESNAPTLEQLEAEFDDELQSDLPXXXXXXXXXXXXXXXXVEGVVRLE 1035
LSR K SV + ++ + E ++ELQ++ E +V +
Sbjct: 271 LSRSKKSVAEFPMKQEFSLSSEDAFEGEEELQTEA---------ISEDDDNDKEDIVDIN 321
Query: 1036 DPKGNEPKPNRHKDWIRARKIYERSKQYIFVAATLPLNGKKTAGGVLKRMFPDANWASGS 1215
+ GN + +DW R RK YERSKQY+FVAATLP+NGKKTAGGVLK MFPDA W G+
Sbjct: 322 NEAGNV----KLRDWRRVRKNYERSKQYVFVAATLPVNGKKTAGGVLKYMFPDAEWVCGN 377
Query: 1216 YLHCHNPRLEQRWIEVTIDTQVDVLIDAVEQGLRSKELNPEIGVCRTLVFANTVDAVEAV 1395
YLHCHNPRLEQ+WIEV +DTQVD LI AV RS++L G+ RT+VFANTV+AVEAV
Sbjct: 378 YLHCHNPRLEQKWIEVMVDTQVDELIKAVNHRFRSEDLVNAGGIHRTMVFANTVEAVEAV 437
Query: 1396 AKILRNVGVECSCYHSDSSLEERSKNLVDFRERGGVLVCTDAAARGLDVLNVQHVIQAEF 1575
AKIL G+ECS YH + +LEER++ LVDF+++GGVLVCTDAAARG+D+ NV HVIQA+F
Sbjct: 438 AKILLRSGIECSRYHKNCTLEERAQTLVDFQDKGGVLVCTDAAARGVDIPNVLHVIQADF 497
Query: 1576 ASSAVDFIHRIGRTARAGQSGLVTSLYTKSNRDLVAAVHQAGNLGQPVEKAFSRKRGFRN 1755
A+SAVDF+HR+GRTARAGQ GLVTS+ T+SNR+LV AV +AG L QPVE AFSRKR FRN
Sbjct: 498 ATSAVDFLHRVGRTARAGQIGLVTSMCTESNRELVNAVRRAGELDQPVETAFSRKRSFRN 557
Query: 1756 KLKKRGSKGVTVEATAEDRVL 1818
KLKKRG+ V AT ++ VL
Sbjct: 558 KLKKRGTNKVRDSATIKESVL 578
>ref|XP_003530661.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 22-like [Glycine max]
Length = 577
Score = 595 bits (1535), Expect = e-167
Identities = 302/524 (57%), Positives = 394/524 (75%)
Frame = +1
Query: 247 ESFYADESVTWNSIGVSEKLSRSLSNIGLHKPSLIQATCIPSILSEKDVVVAAETGSGKT 426
++F+A+E+V+W+S+G+S+ +SR+LSNIGL++PSL+QA+ +PS+LS KDV++AAETGSGKT
Sbjct: 69 DTFFAEENVSWSSLGLSDTISRALSNIGLNRPSLVQASSVPSVLSGKDVIIAAETGSGKT 128
Query: 427 HGYLVPLFDKMLNFRGHSAGTDDGREHSQPLHFSLVLCPNVMLCEQVVRMANCINNDSGQ 606
+ YLVPL DK+ + S RE + LVLCPNV LCEQVVRMAN + D +
Sbjct: 129 YSYLVPLIDKLRVTQERSLLAVSDREVTSLHKVLLVLCPNVQLCEQVVRMANSLCKDDSE 188
Query: 607 PLLQVSAVCGRQGWPVSQPDILVSTPAALLNYLYALDPERRRRSDFLRGLKYVVFDEADM 786
++ +A+CG+QGWP+ +PD++V+TPAALLNY+ D +R RR +F+RG+KYVVFDEAD+
Sbjct: 189 TIVSAAAICGKQGWPIREPDVIVTTPAALLNYV---DLDRTRRVEFMRGVKYVVFDEADL 245
Query: 787 LLCGSFQNQVIRLINMFRFEEKVLSRLKNSVVKSSIESNAPTLEQLEAEFDDELQSDLPX 966
LLCGSFQN+VIRLIN+ RF+EK+LSR K SV + ++ + + E +++L+++
Sbjct: 246 LLCGSFQNKVIRLINLLRFDEKLLSRSKKSVAEFPMKQESSLSSEDAFEGEEKLETEA-- 303
Query: 967 XXXXXXXXXXXXXXXVEGVVRLEDPKGNEPKPNRHKDWIRARKIYERSKQYIFVAATLPL 1146
E + + NE + + +DW R RK YERSKQY+FVAATLP+
Sbjct: 304 -------ILEEDNNDKEDIADIN----NEAENVKLRDWRRVRKNYERSKQYVFVAATLPV 352
Query: 1147 NGKKTAGGVLKRMFPDANWASGSYLHCHNPRLEQRWIEVTIDTQVDVLIDAVEQGLRSKE 1326
NGKKTAGGVLK MFPDA W G YLHCHNPRLEQ+WIEVT+DTQVD LI AV RS++
Sbjct: 353 NGKKTAGGVLKYMFPDAEWVCGDYLHCHNPRLEQKWIEVTVDTQVDELIKAVNHRFRSED 412
Query: 1327 LNPEIGVCRTLVFANTVDAVEAVAKILRNVGVECSCYHSDSSLEERSKNLVDFRERGGVL 1506
L G+ RT+VFANTV+AVEAVAKIL + G+ECS YH + +LEER++ LVDF ++GGVL
Sbjct: 413 LVNAGGIHRTMVFANTVEAVEAVAKILLHSGIECSRYHKNCTLEERAQTLVDFHDKGGVL 472
Query: 1507 VCTDAAARGLDVLNVQHVIQAEFASSAVDFIHRIGRTARAGQSGLVTSLYTKSNRDLVAA 1686
VCTDAAARG+D+ NV HVIQ +FA+SAVDF+HR+GRTARAGQ GLVTS+YT+SNR+LV A
Sbjct: 473 VCTDAAARGVDIPNVLHVIQVDFATSAVDFLHRVGRTARAGQFGLVTSMYTESNRELVNA 532
Query: 1687 VHQAGNLGQPVEKAFSRKRGFRNKLKKRGSKGVTVEATAEDRVL 1818
V +AG L QPVE AFSRKR FRNKLKKRG+ V A ++ VL
Sbjct: 533 VRRAGELDQPVETAFSRKRSFRNKLKKRGANKVRDSAPIKESVL 576
>sp|Q6H601.2|RH22_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 22
Length = 577
Score = 594 bits (1531), Expect = e-167
Identities = 311/544 (57%), Positives = 391/544 (71%), Gaps = 4/544 (0%)
Frame = +1
Query: 151 PYKPSRSIRRNYAANVLSVKEITXXXXXXDNGESFYADESVTWNSIGVSEKLSRSLSNIG 330
P P R + R A + + +G+ F+++ES +W S+GVS++L+ +L G
Sbjct: 42 PAPPWRLLSRPRALATAAAEADDAGAGGNGDGDGFFSEESTSWESLGVSDRLASALHGAG 101
Query: 331 LHKPSLIQATCIPSILSEKDVVVAAETGSGKTHGYLVPLFDKMLNFRGHSAGTDDGREH- 507
L +PSL+QA CIP +L+ DV+VAAETGSGKTHGYLVPL +K+ + S +DG
Sbjct: 102 LARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEKLCS---KSISAEDGNSQD 158
Query: 508 --SQPLHFSLVLCPNVMLCEQVVRMANCINNDSGQPLLQVSAVCGRQGWPVSQPDILVST 681
S + +LVLCPNVMLCEQVVRMAN + ++SG+PL +AVCG +GWP +PDILV+T
Sbjct: 159 VTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCGPKGWPTVRPDILVAT 218
Query: 682 PAALLNYLYALDPERRRRSDFLRGLKYVVFDEADMLLCGSFQNQVIRLINMFRFEEKVLS 861
PAALLNYL+ DPE+RRR FLR +K++VFDEADMLLCGSF+NQVIRLI+M RF+EK+LS
Sbjct: 219 PAALLNYLFDYDPEKRRRERFLRNVKFIVFDEADMLLCGSFENQVIRLIHMLRFDEKLLS 278
Query: 862 RLKNSVVKSSIESNAPTLEQLEAEFDDELQSDLPXXXXXXXXXXXXXXXXVEGVVRLEDP 1041
R+++S + S+ E +++ EL +D +G+V+
Sbjct: 279 RMEDSGKEISLGDTNEYREDSDSQ-SAELSAD--------------DEENEDGLVQHRPV 323
Query: 1042 KGNEPKPNRHK-DWIRARKIYERSKQYIFVAATLPLNGKKTAGGVLKRMFPDANWASGSY 1218
HK DW R RK+Y RSKQY+FVAATLP +GKKTAGGVLKRMFP+A W SG+Y
Sbjct: 324 NVENAHIGAHKKDWRRVRKVYRRSKQYVFVAATLPQSGKKTAGGVLKRMFPNAVWVSGAY 383
Query: 1219 LHCHNPRLEQRWIEVTIDTQVDVLIDAVEQGLRSKELNPEIGVCRTLVFANTVDAVEAVA 1398
LH HNPRLE+RWIEVT DTQV L+DAV+ GL+++ + ++G RT+VF NTVDA +V+
Sbjct: 384 LHRHNPRLERRWIEVTADTQVSALLDAVKYGLKNEVHDTKLGPNRTMVFTNTVDAANSVS 443
Query: 1399 KILRNVGVECSCYHSDSSLEERSKNLVDFRERGGVLVCTDAAARGLDVLNVQHVIQAEFA 1578
IL+ VGV C YH DSSLEER+KNL FRE GGVLVCTDAAARGLDV NV HVIQAEFA
Sbjct: 444 DILQRVGVPCILYHRDSSLEERAKNLQSFRENGGVLVCTDAAARGLDVPNVSHVIQAEFA 503
Query: 1579 SSAVDFIHRIGRTARAGQSGLVTSLYTKSNRDLVAAVHQAGNLGQPVEKAFSRKRGFRNK 1758
+ AVDF+HR+GRTARAGQSG+VTSLYT++NRDLV AV QA L QPVEKAFSRKR FRNK
Sbjct: 504 ACAVDFLHRVGRTARAGQSGIVTSLYTEANRDLVRAVRQAEELAQPVEKAFSRKRSFRNK 563
Query: 1759 LKKR 1770
LKK+
Sbjct: 564 LKKQ 567