BLASTX nr result
ID: Coptis24_contig00013972
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00013972
(575 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI35869.3| unnamed protein product [Vitis vinifera] 262 3e-68
ref|XP_002273108.1| PREDICTED: nodulation-signaling pathway 1 pr... 262 3e-68
ref|XP_003548366.1| PREDICTED: nodulation-signaling pathway 1 pr... 248 7e-64
ref|XP_003529836.1| PREDICTED: nodulation-signaling pathway 1 pr... 246 1e-63
ref|XP_002299589.1| GRAS family transcription factor [Populus tr... 246 3e-63
>emb|CBI35869.3| unnamed protein product [Vitis vinifera]
Length = 504
Score = 262 bits (669), Expect = 3e-68
Identities = 127/190 (66%), Positives = 150/190 (78%), Gaps = 1/190 (0%)
Frame = +1
Query: 7 SRSLHIIDIGVSHGLQWPTLLEALSHQSGGQPALVRLTIVADSSAQNNGIAAPFSKGPIG 186
SR+LHI+DIGVSHG+QWPTLLEALS +SGG P LVRLT++A +S + PFS P G
Sbjct: 227 SRNLHILDIGVSHGVQWPTLLEALSRRSGGPPPLVRLTVIAATSDNDQNTETPFSIAPPG 286
Query: 187 DNFASRLLRFAKSXXXXXXXXXXX-HPLQALNPQTLNSSPNETLIVCAQFRLHCLNHTTP 363
DNF++RLL FAKS HPLQ+L+PQ +++SP+ETLIVCAQFRLH LNH TP
Sbjct: 287 DNFSARLLSFAKSMNINLQINRLDNHPLQSLSPQLIDTSPDETLIVCAQFRLHHLNHNTP 346
Query: 364 DDRMTFLKVMRNLEPKAVVLCENDMSCSCNQCGDFTTGFSRRVEYLWRFLDSTSTAFKGR 543
D+R FLKV+R LEP+AV+L EN+M CSC CGDF TGFSRR+EYLW+FLDSTS AFKGR
Sbjct: 347 DERTEFLKVLRKLEPEAVILSENNMDCSCTNCGDFATGFSRRIEYLWKFLDSTSAAFKGR 406
Query: 544 ECEERRVMEG 573
E EERRVMEG
Sbjct: 407 ESEERRVMEG 416
>ref|XP_002273108.1| PREDICTED: nodulation-signaling pathway 1 protein [Vitis vinifera]
Length = 545
Score = 262 bits (669), Expect = 3e-68
Identities = 127/190 (66%), Positives = 150/190 (78%), Gaps = 1/190 (0%)
Frame = +1
Query: 7 SRSLHIIDIGVSHGLQWPTLLEALSHQSGGQPALVRLTIVADSSAQNNGIAAPFSKGPIG 186
SR+LHI+DIGVSHG+QWPTLLEALS +SGG P LVRLT++A +S + PFS P G
Sbjct: 268 SRNLHILDIGVSHGVQWPTLLEALSRRSGGPPPLVRLTVIAATSDNDQNTETPFSIAPPG 327
Query: 187 DNFASRLLRFAKSXXXXXXXXXXX-HPLQALNPQTLNSSPNETLIVCAQFRLHCLNHTTP 363
DNF++RLL FAKS HPLQ+L+PQ +++SP+ETLIVCAQFRLH LNH TP
Sbjct: 328 DNFSARLLSFAKSMNINLQINRLDNHPLQSLSPQLIDTSPDETLIVCAQFRLHHLNHNTP 387
Query: 364 DDRMTFLKVMRNLEPKAVVLCENDMSCSCNQCGDFTTGFSRRVEYLWRFLDSTSTAFKGR 543
D+R FLKV+R LEP+AV+L EN+M CSC CGDF TGFSRR+EYLW+FLDSTS AFKGR
Sbjct: 388 DERTEFLKVLRKLEPEAVILSENNMDCSCTNCGDFATGFSRRIEYLWKFLDSTSAAFKGR 447
Query: 544 ECEERRVMEG 573
E EERRVMEG
Sbjct: 448 ESEERRVMEG 457
>ref|XP_003548366.1| PREDICTED: nodulation-signaling pathway 1 protein-like [Glycine
max]
Length = 543
Score = 248 bits (632), Expect = 7e-64
Identities = 122/192 (63%), Positives = 147/192 (76%), Gaps = 1/192 (0%)
Frame = +1
Query: 1 DSSRSLHIIDIGVSHGLQWPTLLEALSHQSGGQPALVRLTIVADSSAQNNGIAAPFSKGP 180
++SR+LHI+DIGVSHG+QWPT LEALS + GG P LVRLT+V SS+ N PF GP
Sbjct: 263 NNSRTLHILDIGVSHGMQWPTFLEALSRRPGGPPPLVRLTVVTASSSTEND--TPFCIGP 320
Query: 181 IGDNFASRLLRFAKSXXXXXXXXXXXH-PLQALNPQTLNSSPNETLIVCAQFRLHCLNHT 357
GDNF+SRLL FA+S + PL LN Q++++SP+E +VCAQFRLH LNH
Sbjct: 321 PGDNFSSRLLGFAQSMNVNLQINKLDNCPLHTLNAQSVDTSPDEIFVVCAQFRLHQLNHN 380
Query: 358 TPDDRMTFLKVMRNLEPKAVVLCENDMSCSCNQCGDFTTGFSRRVEYLWRFLDSTSTAFK 537
PD+R FLKV+RN+EPK V+L +N+M C CN CGDFTTGFSRRVEYLWRFLDSTS+AFK
Sbjct: 381 APDERSEFLKVLRNMEPKGVILSDNNMGCCCNCCGDFTTGFSRRVEYLWRFLDSTSSAFK 440
Query: 538 GRECEERRVMEG 573
GRE +ERRVMEG
Sbjct: 441 GRESDERRVMEG 452
>ref|XP_003529836.1| PREDICTED: nodulation-signaling pathway 1 protein-like [Glycine
max]
Length = 542
Score = 246 bits (629), Expect = 1e-63
Identities = 121/192 (63%), Positives = 147/192 (76%), Gaps = 1/192 (0%)
Frame = +1
Query: 1 DSSRSLHIIDIGVSHGLQWPTLLEALSHQSGGQPALVRLTIVADSSAQNNGIAAPFSKGP 180
D+SR+LHI+DIGVSHG+QWPT LEALS ++GG P LVRLT+V SS+ N PF GP
Sbjct: 265 DNSRTLHILDIGVSHGMQWPTFLEALSRRAGGPPPLVRLTVVTASSSTEND--TPFCIGP 322
Query: 181 IGDNFASRLLRFAKSXXXXXXXXXXXH-PLQALNPQTLNSSPNETLIVCAQFRLHCLNHT 357
GDNF+SRLL FA+S + PL +LN Q++++SP+E +VCAQFRLH LNH
Sbjct: 323 PGDNFSSRLLGFAQSMNVNLQINKLDNCPLHSLNAQSVDASPDEIFVVCAQFRLHQLNHN 382
Query: 358 TPDDRMTFLKVMRNLEPKAVVLCENDMSCSCNQCGDFTTGFSRRVEYLWRFLDSTSTAFK 537
PD+R FL V+RN+EPK V+L +N++ C CN CGDF TGFSRRVEYLWRFLDSTS+AFK
Sbjct: 383 APDERSKFLTVLRNMEPKGVILSDNNLGCCCNCCGDFATGFSRRVEYLWRFLDSTSSAFK 442
Query: 538 GRECEERRVMEG 573
GRE EERRVMEG
Sbjct: 443 GRESEERRVMEG 454
>ref|XP_002299589.1| GRAS family transcription factor [Populus trichocarpa]
gi|66947640|emb|CAJ00014.1| Nodulation Signaling Pathway
1 protein homologue 1 [Populus trichocarpa]
gi|222846847|gb|EEE84394.1| GRAS family transcription
factor [Populus trichocarpa]
Length = 556
Score = 246 bits (627), Expect = 3e-63
Identities = 119/192 (61%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Frame = +1
Query: 1 DSSRSLHIIDIGVSHGLQWPTLLEALSHQSGGQPALVRLTIVADSSAQNNGIAAPFSKGP 180
D R+LH++DIGVSHG+QWPTLLEAL+ + GG P LVR+T++ +S + PFS GP
Sbjct: 276 DPRRNLHVLDIGVSHGVQWPTLLEALTRRPGGPPPLVRITVITAASENDQTTETPFSIGP 335
Query: 181 IGDNFASRLLRFAKSXXXXXXXXXXX-HPLQALNPQTLNSSPNETLIVCAQFRLHCLNHT 357
GDNF+SRLL FAKS H LQ L+ + +++ P+E LIVCAQFRLH LNH
Sbjct: 336 PGDNFSSRLLGFAKSMNINLQIKRLDNHSLQKLSGRIIDTKPDEALIVCAQFRLHHLNHN 395
Query: 358 TPDDRMTFLKVMRNLEPKAVVLCENDMSCSCNQCGDFTTGFSRRVEYLWRFLDSTSTAFK 537
TPD+R FL+V+R LEPK V+L EN+M CSCN CGDF TGFSRRVEYLWRFLDSTS+AFK
Sbjct: 396 TPDERTEFLRVLRRLEPKGVILTENNMDCSCNSCGDFATGFSRRVEYLWRFLDSTSSAFK 455
Query: 538 GRECEERRVMEG 573
GRE ERR+MEG
Sbjct: 456 GRESVERRMMEG 467