BLASTX nr result
ID: Coptis24_contig00013959
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00013959 (351 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002510773.1| ATP-dependent RNA helicase, putative [Ricinu... 135 4e-39 ref|XP_003544395.1| PREDICTED: probable pre-mRNA-splicing factor... 137 8e-39 ref|XP_003549455.1| PREDICTED: probable pre-mRNA-splicing factor... 137 8e-39 ref|XP_002331832.1| predicted protein [Populus trichocarpa] gi|2... 134 8e-39 ref|XP_002318357.1| predicted protein [Populus trichocarpa] gi|2... 135 1e-38 >ref|XP_002510773.1| ATP-dependent RNA helicase, putative [Ricinus communis] gi|223551474|gb|EEF52960.1| ATP-dependent RNA helicase, putative [Ricinus communis] Length = 1177 Score = 135 bits (341), Expect(2) = 4e-39 Identities = 62/67 (92%), Positives = 65/67 (97%) Frame = +1 Query: 151 TMLDSIPKDLNRPWKDPMPETGERHLAQELRGIGLSGYDMPEWKKDAYGKTLTFGQRSKL 330 TMLDSIPKDLNRPW+DPMPETGERHLAQELRG+GLS YDMPEWKKDA+GK LTFGQRSKL Sbjct: 456 TMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSKL 515 Query: 331 SIQEQRQ 351 SIQEQRQ Sbjct: 516 SIQEQRQ 522 Score = 50.8 bits (120), Expect(2) = 4e-39 Identities = 22/25 (88%), Positives = 23/25 (92%) Frame = +2 Query: 2 PAFLHGQTRYSIDMSPVKILKNPEG 76 PAFL GQTRYS+DMSPVKI KNPEG Sbjct: 406 PAFLQGQTRYSVDMSPVKIFKNPEG 430 >ref|XP_003544395.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Glycine max] Length = 1203 Score = 137 bits (344), Expect(2) = 8e-39 Identities = 62/67 (92%), Positives = 66/67 (98%) Frame = +1 Query: 151 TMLDSIPKDLNRPWKDPMPETGERHLAQELRGIGLSGYDMPEWKKDAYGKTLTFGQRSKL 330 TMLDSIPKDLNRPW+DPMPE+GERHLAQELRG+GLS YDMPEWKKDAYGKT+TFGQRSKL Sbjct: 482 TMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKL 541 Query: 331 SIQEQRQ 351 SIQEQRQ Sbjct: 542 SIQEQRQ 548 Score = 48.5 bits (114), Expect(2) = 8e-39 Identities = 21/25 (84%), Positives = 23/25 (92%) Frame = +2 Query: 2 PAFLHGQTRYSIDMSPVKILKNPEG 76 PAFL GQ+RYS+DMSPVKI KNPEG Sbjct: 432 PAFLQGQSRYSMDMSPVKIFKNPEG 456 >ref|XP_003549455.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Glycine max] Length = 1197 Score = 137 bits (344), Expect(2) = 8e-39 Identities = 62/67 (92%), Positives = 66/67 (98%) Frame = +1 Query: 151 TMLDSIPKDLNRPWKDPMPETGERHLAQELRGIGLSGYDMPEWKKDAYGKTLTFGQRSKL 330 TMLDSIPKDLNRPW+DPMPE+GERHLAQELRG+GLS YDMPEWKKDAYGKT+TFGQRSKL Sbjct: 476 TMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKL 535 Query: 331 SIQEQRQ 351 SIQEQRQ Sbjct: 536 SIQEQRQ 542 Score = 48.5 bits (114), Expect(2) = 8e-39 Identities = 21/25 (84%), Positives = 23/25 (92%) Frame = +2 Query: 2 PAFLHGQTRYSIDMSPVKILKNPEG 76 PAFL GQ+RYS+DMSPVKI KNPEG Sbjct: 426 PAFLQGQSRYSMDMSPVKIFKNPEG 450 >ref|XP_002331832.1| predicted protein [Populus trichocarpa] gi|222875070|gb|EEF12201.1| predicted protein [Populus trichocarpa] Length = 1171 Score = 134 bits (338), Expect(2) = 8e-39 Identities = 61/67 (91%), Positives = 65/67 (97%) Frame = +1 Query: 151 TMLDSIPKDLNRPWKDPMPETGERHLAQELRGIGLSGYDMPEWKKDAYGKTLTFGQRSKL 330 TMLDSIPKDLNRPW+DPMPETGERHLAQELRG+GLS YDMPEWKKDA+GK LT+GQRSKL Sbjct: 450 TMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTYGQRSKL 509 Query: 331 SIQEQRQ 351 SIQEQRQ Sbjct: 510 SIQEQRQ 516 Score = 50.8 bits (120), Expect(2) = 8e-39 Identities = 22/25 (88%), Positives = 23/25 (92%) Frame = +2 Query: 2 PAFLHGQTRYSIDMSPVKILKNPEG 76 PAFL GQTRYS+DMSPVKI KNPEG Sbjct: 400 PAFLQGQTRYSVDMSPVKIFKNPEG 424 >ref|XP_002318357.1| predicted protein [Populus trichocarpa] gi|222859030|gb|EEE96577.1| predicted protein [Populus trichocarpa] Length = 1207 Score = 135 bits (341), Expect(2) = 1e-38 Identities = 62/67 (92%), Positives = 65/67 (97%) Frame = +1 Query: 151 TMLDSIPKDLNRPWKDPMPETGERHLAQELRGIGLSGYDMPEWKKDAYGKTLTFGQRSKL 330 TMLDSIPKDLNRPW+DPMPETGERHLAQELRG+GLS YDMPEWKKDA+GK LTFGQRSKL Sbjct: 486 TMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSKL 545 Query: 331 SIQEQRQ 351 SIQEQRQ Sbjct: 546 SIQEQRQ 552 Score = 49.3 bits (116), Expect(2) = 1e-38 Identities = 21/25 (84%), Positives = 23/25 (92%) Frame = +2 Query: 2 PAFLHGQTRYSIDMSPVKILKNPEG 76 PAFL GQTRYS+D+SPVKI KNPEG Sbjct: 436 PAFLQGQTRYSVDVSPVKIFKNPEG 460