BLASTX nr result

ID: Coptis24_contig00013917 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013917
         (1009 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004161683.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic p...   297   3e-78
ref|XP_004142086.1| PREDICTED: eukaryotic peptide chain release ...   297   3e-78
ref|XP_002297898.1| predicted protein [Populus trichocarpa] gi|2...   296   4e-78
gb|ABK95851.1| unknown [Populus trichocarpa]                          296   4e-78
ref|XP_002321067.1| predicted protein [Populus trichocarpa] gi|2...   296   7e-78

>ref|XP_004161683.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic peptide chain release
            factor subunit 1-3-like [Cucumis sativus]
          Length = 436

 Score =  297 bits (760), Expect = 3e-78
 Identities = 144/165 (87%), Positives = 156/165 (94%)
 Frame = -3

Query: 1007 SAEILSNVKFVQEKRLIGKYFEEISQDTGKYVFGIDDTLKALEMGAVEILIVWENLDINR 828
            S+EILSNVKF+QEKRLIGKYFEEISQDTGKYVFG+DDTLKALEMGAVEILIVWENLDINR
Sbjct: 272  SSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINR 331

Query: 827  YLLKNNVTGETVIKHFNKVQEANQSNFRDSDTSADLEVQEKTSLLEWFANEYRKFGCSLE 648
            Y+LKN  TGE +IKH NK QEANQSNFRDS TSA+LEVQEK +LLEWFANEY+KFGC+LE
Sbjct: 332  YVLKNAATGEIIIKHLNKEQEANQSNFRDSATSAELEVQEKMALLEWFANEYKKFGCTLE 391

Query: 647  FVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDEDVYEDSE 513
            FVTNKSQEGSQFCRGFGGIGGILRYQLD+RSFDELSD + Y+DSE
Sbjct: 392  FVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDGEEYDDSE 436


>ref|XP_004142086.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like
            [Cucumis sativus]
          Length = 436

 Score =  297 bits (760), Expect = 3e-78
 Identities = 144/165 (87%), Positives = 156/165 (94%)
 Frame = -3

Query: 1007 SAEILSNVKFVQEKRLIGKYFEEISQDTGKYVFGIDDTLKALEMGAVEILIVWENLDINR 828
            S+EILSNVKF+QEKRLIGKYFEEISQDTGKYVFG+DDTLKALEMGAVEILIVWENLDINR
Sbjct: 272  SSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINR 331

Query: 827  YLLKNNVTGETVIKHFNKVQEANQSNFRDSDTSADLEVQEKTSLLEWFANEYRKFGCSLE 648
            Y+LKN  TGE +IKH NK QEANQSNFRDS TSA+LEVQEK +LLEWFANEY+KFGC+LE
Sbjct: 332  YVLKNAATGEIIIKHLNKEQEANQSNFRDSATSAELEVQEKMALLEWFANEYKKFGCTLE 391

Query: 647  FVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDEDVYEDSE 513
            FVTNKSQEGSQFCRGFGGIGGILRYQLD+RSFDELSD + Y+DSE
Sbjct: 392  FVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDGEEYDDSE 436


>ref|XP_002297898.1| predicted protein [Populus trichocarpa] gi|222845156|gb|EEE82703.1|
            predicted protein [Populus trichocarpa]
          Length = 436

 Score =  296 bits (759), Expect = 4e-78
 Identities = 143/165 (86%), Positives = 156/165 (94%)
 Frame = -3

Query: 1007 SAEILSNVKFVQEKRLIGKYFEEISQDTGKYVFGIDDTLKALEMGAVEILIVWENLDINR 828
            SAEILSNVKF+QEKRLIGKYFEEISQDTGKYVFG+DDTLKALEMGAVE LIVWE+LDINR
Sbjct: 272  SAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWESLDINR 331

Query: 827  YLLKNNVTGETVIKHFNKVQEANQSNFRDSDTSADLEVQEKTSLLEWFANEYRKFGCSLE 648
            Y LKN+ TGE  IKH+NK QE+NQ NFRDS T+A+LEVQ+KT LLEWFANEY++FGCSLE
Sbjct: 332  YQLKNSATGEVTIKHWNKEQESNQGNFRDSVTNAELEVQDKTPLLEWFANEYKRFGCSLE 391

Query: 647  FVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDEDVYEDSE 513
            FVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDE+VY+DSE
Sbjct: 392  FVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDEEVYDDSE 436


>gb|ABK95851.1| unknown [Populus trichocarpa]
          Length = 243

 Score =  296 bits (759), Expect = 4e-78
 Identities = 143/165 (86%), Positives = 156/165 (94%)
 Frame = -3

Query: 1007 SAEILSNVKFVQEKRLIGKYFEEISQDTGKYVFGIDDTLKALEMGAVEILIVWENLDINR 828
            SAEILSNVKF+QEKRLIGKYFEEISQDTGKYVFG+DDTLKALEMGAVE LIVWE+LDINR
Sbjct: 79   SAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWESLDINR 138

Query: 827  YLLKNNVTGETVIKHFNKVQEANQSNFRDSDTSADLEVQEKTSLLEWFANEYRKFGCSLE 648
            Y LKN+ TGE  IKH+NK QE+NQ NFRDS T+A+LEVQ+KT LLEWFANEY++FGCSLE
Sbjct: 139  YQLKNSATGEVTIKHWNKEQESNQGNFRDSVTNAELEVQDKTPLLEWFANEYKRFGCSLE 198

Query: 647  FVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDEDVYEDSE 513
            FVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDE+VY+DSE
Sbjct: 199  FVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDEEVYDDSE 243


>ref|XP_002321067.1| predicted protein [Populus trichocarpa] gi|222861840|gb|EEE99382.1|
            predicted protein [Populus trichocarpa]
          Length = 436

 Score =  296 bits (757), Expect = 7e-78
 Identities = 143/165 (86%), Positives = 156/165 (94%)
 Frame = -3

Query: 1007 SAEILSNVKFVQEKRLIGKYFEEISQDTGKYVFGIDDTLKALEMGAVEILIVWENLDINR 828
            SAEILSNVKF+QEKRLIGKYFEEISQDTGKYVFG+DDTLKALEMGAVEILIVWENLDINR
Sbjct: 272  SAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINR 331

Query: 827  YLLKNNVTGETVIKHFNKVQEANQSNFRDSDTSADLEVQEKTSLLEWFANEYRKFGCSLE 648
            Y LKN+ TGE +IKH NK QEA+Q+NFRDS T+A+LEVQEK  LLEWFANEY++FGC+LE
Sbjct: 332  YTLKNSATGEIIIKHLNKDQEADQNNFRDSATAAELEVQEKMPLLEWFANEYKRFGCTLE 391

Query: 647  FVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDEDVYEDSE 513
            FVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSD +VYEDS+
Sbjct: 392  FVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDGEVYEDSD 436


Top