BLASTX nr result
ID: Coptis24_contig00013914
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00013914 (647 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containi... 223 2e-56 ref|NP_198814.1| pentatricopeptide repeat-containing protein [Ar... 216 3e-54 ref|XP_002870737.1| pentatricopeptide repeat-containing protein ... 210 2e-52 ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containi... 207 1e-51 ref|XP_002517447.1| pentatricopeptide repeat-containing protein,... 198 6e-49 >ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Vitis vinifera] gi|296087770|emb|CBI35026.3| unnamed protein product [Vitis vinifera] Length = 675 Score = 223 bits (568), Expect = 2e-56 Identities = 118/191 (61%), Positives = 143/191 (74%), Gaps = 2/191 (1%) Frame = -2 Query: 568 YTNINKSKKHKPPSLLFTITSSSTHSPNKHVWKRXXXXXXXXXXXXT-HQTRHTHV-YLD 395 ++ NK++KH+ +L ++ K VW+R H+ R V +LD Sbjct: 36 FSPFNKTQKHRACFILVSVF--------KDVWRRLPDETTSLLSSSRQHRPRKQRVVHLD 87 Query: 394 HSVDMDDLLLSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLDWMIE 215 HSVDMD+LL SISQTS +QELYSL+S YK RQLS+RFMVS+L+RE DWQR++ALLDW+ E Sbjct: 88 HSVDMDELLASISQTSNEQELYSLMSPYKGRQLSIRFMVSLLSREPDWQRSLALLDWINE 147 Query: 214 EAGYIPSVFAYNVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFGKEGMFD 35 EA Y PSVFAYNVVIRNVLRAKQWEL GL EEMR+RA++PD++TYSTLIT FGKEGMFD Sbjct: 148 EASYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFD 207 Query: 34 SALSWLQCMEQ 2 SALSWLQ MEQ Sbjct: 208 SALSWLQKMEQ 218 >ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39980, chloroplastic; Flags: Precursor gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana] gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 678 Score = 216 bits (550), Expect = 3e-54 Identities = 109/180 (60%), Positives = 139/180 (77%), Gaps = 4/180 (2%) Frame = -2 Query: 529 SLLFTIT--SSSTHSPNKHVWKRXXXXXXXXXXXXT--HQTRHTHVYLDHSVDMDDLLLS 362 +L+FT++ SSS + NK VW++ H+ +LDH+VDMD+LL S Sbjct: 39 NLIFTVSASSSSESTQNKKVWRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMDELLAS 98 Query: 361 ISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLDWMIEEAGYIPSVFAY 182 I QT ++EL+SLLS YKDRQLS+RFMVS+L+RE DWQR++ALLDW+ EEA Y PSVFAY Sbjct: 99 IHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAY 158 Query: 181 NVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFGKEGMFDSALSWLQCMEQ 2 NVV+RNVLRAKQ+++ GL +EMR+RA++PD++TYSTLIT FGKEGMFDSALSWLQ MEQ Sbjct: 159 NVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQ 218 >ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 680 Score = 210 bits (535), Expect = 2e-52 Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 6/182 (3%) Frame = -2 Query: 529 SLLFTIT-SSSTHSPN---KHVWKRXXXXXXXXXXXXT--HQTRHTHVYLDHSVDMDDLL 368 +L+F ++ SSS+ SP+ K VW++ H+ +LDH+VDMD+LL Sbjct: 39 NLIFKVSASSSSSSPSTQTKKVWRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMDELL 98 Query: 367 LSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLDWMIEEAGYIPSVF 188 SI QT ++EL+SLLS YKDRQLS+RFMVS+L+RE DWQR++ALLDW+ EEA Y PSVF Sbjct: 99 ASIHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVF 158 Query: 187 AYNVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFGKEGMFDSALSWLQCM 8 AYNVV+RNVLRAKQ+ + GL +EMR+RA++PD++TYSTLIT FGKEGMFDSALSWLQ M Sbjct: 159 AYNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKM 218 Query: 7 EQ 2 EQ Sbjct: 219 EQ 220 >ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic-like [Cucumis sativus] gi|449530101|ref|XP_004172035.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic-like [Cucumis sativus] Length = 680 Score = 207 bits (527), Expect = 1e-51 Identities = 105/195 (53%), Positives = 139/195 (71%), Gaps = 6/195 (3%) Frame = -2 Query: 568 YTNINKSKKHKPPSLLFTITSSSTHSPNKHVWKRXXXXXXXXXXXXTHQTRHT------H 407 Y + +K P I ++S+ S +K +W+R + + + Sbjct: 28 YPKVRFNKIKIKPRTRIPIFTASSSSTSKDIWRRQTPSEKSTTTLLPQKYQRSGRRPRES 87 Query: 406 VYLDHSVDMDDLLLSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLD 227 +LDHS+DMD+LL SI QT +QELYS+LS YK R+LS+RFMVS+L+RE+DWQR++A+LD Sbjct: 88 SHLDHSIDMDELLASIGQTKNEQELYSVLSPYKGRELSMRFMVSLLSRESDWQRSLAILD 147 Query: 226 WMIEEAGYIPSVFAYNVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFGKE 47 W+ EEA Y PSV+AYNVV+RNVLRAKQWEL GL +EMR+RA++ D++TYSTLIT FGKE Sbjct: 148 WINEEALYTPSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAADRYTYSTLITYFGKE 207 Query: 46 GMFDSALSWLQCMEQ 2 GMFD+ALSWLQ MEQ Sbjct: 208 GMFDAALSWLQKMEQ 222 >ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 654 Score = 198 bits (504), Expect = 6e-49 Identities = 96/137 (70%), Positives = 116/137 (84%) Frame = -2 Query: 412 THVYLDHSVDMDDLLLSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVAL 233 T YLDHSVDM LL+SISQT + ELYSLLS YK+RQLS+RFMVS++++E DWQR++AL Sbjct: 61 TPSYLDHSVDMKQLLISISQTQNEVELYSLLSPYKERQLSIRFMVSLISQEADWQRSLAL 120 Query: 232 LDWMIEEAGYIPSVFAYNVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFG 53 LDW+ E A Y PSVFAYNVV+RNVLRAK+W+L GL +EMR+RA+SPD++TYSTLIT FG Sbjct: 121 LDWINEVARYSPSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFG 180 Query: 52 KEGMFDSALSWLQCMEQ 2 K GMFD +L WLQ MEQ Sbjct: 181 KAGMFDESLFWLQQMEQ 197