BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013914
         (647 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containi...   223   2e-56
ref|NP_198814.1| pentatricopeptide repeat-containing protein [Ar...   216   3e-54
ref|XP_002870737.1| pentatricopeptide repeat-containing protein ...   210   2e-52
ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containi...   207   1e-51
ref|XP_002517447.1| pentatricopeptide repeat-containing protein,...   198   6e-49

>ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
           gi|296087770|emb|CBI35026.3| unnamed protein product
           [Vitis vinifera]
          Length = 675

 Score =  223 bits (568), Expect = 2e-56
 Identities = 118/191 (61%), Positives = 143/191 (74%), Gaps = 2/191 (1%)
 Frame = -2

Query: 568 YTNINKSKKHKPPSLLFTITSSSTHSPNKHVWKRXXXXXXXXXXXXT-HQTRHTHV-YLD 395
           ++  NK++KH+   +L ++         K VW+R              H+ R   V +LD
Sbjct: 36  FSPFNKTQKHRACFILVSVF--------KDVWRRLPDETTSLLSSSRQHRPRKQRVVHLD 87

Query: 394 HSVDMDDLLLSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLDWMIE 215
           HSVDMD+LL SISQTS +QELYSL+S YK RQLS+RFMVS+L+RE DWQR++ALLDW+ E
Sbjct: 88  HSVDMDELLASISQTSNEQELYSLMSPYKGRQLSIRFMVSLLSREPDWQRSLALLDWINE 147

Query: 214 EAGYIPSVFAYNVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFGKEGMFD 35
           EA Y PSVFAYNVVIRNVLRAKQWEL  GL EEMR+RA++PD++TYSTLIT FGKEGMFD
Sbjct: 148 EASYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFD 207

Query: 34  SALSWLQCMEQ 2
           SALSWLQ MEQ
Sbjct: 208 SALSWLQKMEQ 218


>ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
           gi|10176990|dbj|BAB10222.1| unnamed protein product
           [Arabidopsis thaliana] gi|332007115|gb|AED94498.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 678

 Score =  216 bits (550), Expect = 3e-54
 Identities = 109/180 (60%), Positives = 139/180 (77%), Gaps = 4/180 (2%)
 Frame = -2

Query: 529 SLLFTIT--SSSTHSPNKHVWKRXXXXXXXXXXXXT--HQTRHTHVYLDHSVDMDDLLLS 362
           +L+FT++  SSS  + NK VW++               H+      +LDH+VDMD+LL S
Sbjct: 39  NLIFTVSASSSSESTQNKKVWRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMDELLAS 98

Query: 361 ISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLDWMIEEAGYIPSVFAY 182
           I QT  ++EL+SLLS YKDRQLS+RFMVS+L+RE DWQR++ALLDW+ EEA Y PSVFAY
Sbjct: 99  IHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAY 158

Query: 181 NVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFGKEGMFDSALSWLQCMEQ 2
           NVV+RNVLRAKQ+++  GL +EMR+RA++PD++TYSTLIT FGKEGMFDSALSWLQ MEQ
Sbjct: 159 NVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQ 218


>ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297316573|gb|EFH46996.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 680

 Score =  210 bits (535), Expect = 2e-52
 Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 6/182 (3%)
 Frame = -2

Query: 529 SLLFTIT-SSSTHSPN---KHVWKRXXXXXXXXXXXXT--HQTRHTHVYLDHSVDMDDLL 368
           +L+F ++ SSS+ SP+   K VW++               H+      +LDH+VDMD+LL
Sbjct: 39  NLIFKVSASSSSSSPSTQTKKVWRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMDELL 98

Query: 367 LSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLDWMIEEAGYIPSVF 188
            SI QT  ++EL+SLLS YKDRQLS+RFMVS+L+RE DWQR++ALLDW+ EEA Y PSVF
Sbjct: 99  ASIHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVF 158

Query: 187 AYNVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFGKEGMFDSALSWLQCM 8
           AYNVV+RNVLRAKQ+ +  GL +EMR+RA++PD++TYSTLIT FGKEGMFDSALSWLQ M
Sbjct: 159 AYNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKM 218

Query: 7   EQ 2
           EQ
Sbjct: 219 EQ 220


>ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
           gi|449530101|ref|XP_004172035.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
          Length = 680

 Score =  207 bits (527), Expect = 1e-51
 Identities = 105/195 (53%), Positives = 139/195 (71%), Gaps = 6/195 (3%)
 Frame = -2

Query: 568 YTNINKSKKHKPPSLLFTITSSSTHSPNKHVWKRXXXXXXXXXXXXTHQTRHT------H 407
           Y  +  +K    P     I ++S+ S +K +W+R              + + +       
Sbjct: 28  YPKVRFNKIKIKPRTRIPIFTASSSSTSKDIWRRQTPSEKSTTTLLPQKYQRSGRRPRES 87

Query: 406 VYLDHSVDMDDLLLSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLD 227
            +LDHS+DMD+LL SI QT  +QELYS+LS YK R+LS+RFMVS+L+RE+DWQR++A+LD
Sbjct: 88  SHLDHSIDMDELLASIGQTKNEQELYSVLSPYKGRELSMRFMVSLLSRESDWQRSLAILD 147

Query: 226 WMIEEAGYIPSVFAYNVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFGKE 47
           W+ EEA Y PSV+AYNVV+RNVLRAKQWEL  GL +EMR+RA++ D++TYSTLIT FGKE
Sbjct: 148 WINEEALYTPSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAADRYTYSTLITYFGKE 207

Query: 46  GMFDSALSWLQCMEQ 2
           GMFD+ALSWLQ MEQ
Sbjct: 208 GMFDAALSWLQKMEQ 222


>ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543458|gb|EEF44989.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 654

 Score =  198 bits (504), Expect = 6e-49
 Identities = 96/137 (70%), Positives = 116/137 (84%)
 Frame = -2

Query: 412 THVYLDHSVDMDDLLLSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVAL 233
           T  YLDHSVDM  LL+SISQT  + ELYSLLS YK+RQLS+RFMVS++++E DWQR++AL
Sbjct: 61  TPSYLDHSVDMKQLLISISQTQNEVELYSLLSPYKERQLSIRFMVSLISQEADWQRSLAL 120

Query: 232 LDWMIEEAGYIPSVFAYNVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFG 53
           LDW+ E A Y PSVFAYNVV+RNVLRAK+W+L  GL +EMR+RA+SPD++TYSTLIT FG
Sbjct: 121 LDWINEVARYSPSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFG 180

Query: 52  KEGMFDSALSWLQCMEQ 2
           K GMFD +L WLQ MEQ
Sbjct: 181 KAGMFDESLFWLQQMEQ 197