BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013884
         (1024 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...    87   5e-15
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...    84   7e-14
ref|XP_003594235.1| F-box protein [Medicago truncatula] gi|35548...    83   1e-13
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...    83   1e-13
ref|XP_002534512.1| conserved hypothetical protein [Ricinus comm...    82   3e-13

>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
            gi|222854763|gb|EEE92310.1| f-box family protein [Populus
            trichocarpa]
          Length = 396

 Score = 87.4 bits (215), Expect = 5e-15
 Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 5/164 (3%)
 Frame = -2

Query: 1023 GFGFDPVSKVFKIIRIIQ----DTEEFETSAEVYNVGTGKWRLISKVPYSFKGTKSN-VF 859
            GFG+D V   +K++RI Q        FE+  +VY++    WR I  +PY      +N VF
Sbjct: 150  GFGYDSVRDDYKLVRIAQFGGGGKRSFESEVKVYSLRKQSWRRIGDMPYCVHYPGANGVF 209

Query: 858  VNGALHWIGSPCVKTMDSEVIVSFKLDTEEFQQVXXXXXXXXXXXXXSHFLSDLFASILR 679
             NGALHW+     ++  + ++V+  L  E++++V                         +
Sbjct: 210  ANGALHWVVGENPESNVANIVVALDLGVEDYREVLQPEYKD------------------K 251

Query: 678  RFSQYLAVLDECLCIVRTFNNENIEIWMMKEYGFWSSWVSKYTV 547
             F   L VL  CLC +  F  E +++WMMKEYG   SW   ++V
Sbjct: 252  NFYIDLGVLRGCLCFLANFLGERVDVWMMKEYGVKESWTKLFSV 295


>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
            gi|222861279|gb|EEE98821.1| f-box family protein [Populus
            trichocarpa]
          Length = 422

 Score = 83.6 bits (205), Expect = 7e-14
 Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 12/171 (7%)
 Frame = -2

Query: 1023 GFGFDPVSKVFKIIRIIQDTEEFE------------TSAEVYNVGTGKWRLISKVPYSFK 880
            GFGF+P +K +K+IRI+                   +  ++  +G  +WR + KV Y   
Sbjct: 170  GFGFNPKTKEYKVIRIVYYRNGHGGYPRSRRIIYPLSEVQILTLGCPEWRSLGKVSYRLV 229

Query: 879  GTKSNVFVNGALHWIGSPCVKTMDSEVIVSFKLDTEEFQQVXXXXXXXXXXXXXSHFLSD 700
               S   VNG LHWI  PC +   +  +VSF L  E+F++V                 S 
Sbjct: 230  RRASGALVNGRLHWISRPC-RNKPARRLVSFDLTDEQFREV-----------------SK 271

Query: 699  LFASILRRFSQYLAVLDECLCIVRTFNNENIEIWMMKEYGFWSSWVSKYTV 547
                 L R + +L VL  CL      N   +EIW+MKEY    SWV +Y +
Sbjct: 272  PDCGGLNRCNYHLVVLRGCLSAAVYCNYGRLEIWVMKEYNVKESWVKEYNI 322


>ref|XP_003594235.1| F-box protein [Medicago truncatula] gi|355483283|gb|AES64486.1| F-box
            protein [Medicago truncatula]
          Length = 325

 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 4/163 (2%)
 Frame = -2

Query: 1023 GFGFDPVSKVFKIIRI--IQDTE-EFETSAEVYNVGTGKWRLISKVPYSFKGTKS-NVFV 856
            GFGFDP+S  +K++RI  + D    FE+   ++++ T  W++I  +PY+ K  ++  +FV
Sbjct: 70   GFGFDPLSGDYKLLRISWLADIHYSFESHVRLFSLKTNSWKIIPSMPYALKYVQAMGIFV 129

Query: 855  NGALHWIGSPCVKTMDSEVIVSFKLDTEEFQQVXXXXXXXXXXXXXSHFLSDLFASILRR 676
              +LHW+ +  +      +IV+F L  + F  V                           
Sbjct: 130  ENSLHWVMTREIDESHPCLIVAFNLTLDIFNVVPLPEEVNS-----------------ES 172

Query: 675  FSQYLAVLDECLCIVRTFNNENIEIWMMKEYGFWSSWVSKYTV 547
            F   + VL+ CLC+   + N   E+W+MKEYG   SW   +T+
Sbjct: 173  FEINVVVLEGCLCMTLNYRNTEFEVWVMKEYGSTDSWCKLFTL 215


>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
            gi|222843314|gb|EEE80861.1| f-box family protein [Populus
            trichocarpa]
          Length = 408

 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 51/171 (29%), Positives = 74/171 (43%), Gaps = 12/171 (7%)
 Frame = -2

Query: 1023 GFGFDPVSKVFKIIRIIQDTEEFE------------TSAEVYNVGTGKWRLISKVPYSFK 880
            GFGF+P +  +K+IRI+                   +  ++  +G   WR + KV Y   
Sbjct: 169  GFGFNPKTNEYKVIRIVYYRNGHGRYPRSRRIIYPLSQVQILTLGCPGWRSLGKVSYRLV 228

Query: 879  GTKSNVFVNGALHWIGSPCVKTMDSEVIVSFKLDTEEFQQVXXXXXXXXXXXXXSHFLSD 700
               S   VNG LHW+  PC +   +  +VSF L  E+F++V                   
Sbjct: 229  RRASETLVNGRLHWVSRPC-RNKPARRLVSFDLTDEQFREVPKPDCGG------------ 275

Query: 699  LFASILRRFSQYLAVLDECLCIVRTFNNENIEIWMMKEYGFWSSWVSKYTV 547
                 L R   +LAVL  CL +    N   +EIW+MKEY    SWV +Y +
Sbjct: 276  -----LNRCDYHLAVLRGCLSVAVYCNYGRLEIWVMKEYNVKESWVKEYNI 321


>ref|XP_002534512.1| conserved hypothetical protein [Ricinus communis]
            gi|223525141|gb|EEF27869.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 383

 Score = 81.6 bits (200), Expect = 3e-13
 Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
 Frame = -2

Query: 1023 GFGFDPVSKVFKIIRIIQDTEEFETSAEVYN-----------VGTGKWRLISKVPYSFKG 877
            GFGFDPV K +K++++        T+ E Y            VG+  WR + + PY    
Sbjct: 152  GFGFDPVRKKYKVLKVSYIRRTNNTAGERYGLSLRSEVQILTVGSPSWRSLGETPYYPIH 211

Query: 876  TKSNVFVNGALHWIGSPCVKTMDSEVIVSFKLDTEEFQQVXXXXXXXXXXXXXSHFLSDL 697
            + S V+VNG LHW+  P V+      ++SF L+ E+F++V                   L
Sbjct: 212  SPSQVYVNGRLHWVNWP-VRYRPGRKLISFDLEDEKFREV------------------PL 252

Query: 696  FASILRRFSQY-LAVLDECLCIVRTFNNENIEIWMMKEYGFWSSWVSKYTV 547
              S   ++  Y L V+ +CL      N  + E+W+MK+YG   SW+ ++++
Sbjct: 253  PGSDGIKWGDYMLVVIRDCLSAAVYRNYGSFEVWVMKDYGLKESWIKEFSI 303