BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013842
         (877 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containi...   181   3e-43
emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]   181   3e-43
emb|CBI16890.3| unnamed protein product [Vitis vinifera]              180   4e-43
ref|XP_002532893.1| pentatricopeptide repeat-containing protein,...   172   1e-40
ref|XP_002329310.1| predicted protein [Populus trichocarpa] gi|2...   171   3e-40

>ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  181 bits (458), Expect = 3e-43
 Identities = 89/145 (61%), Positives = 114/145 (78%), Gaps = 4/145 (2%)
 Frame = +3

Query: 3   WILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKVFTLMQGK 170
           W++D Y +Q N++A++RLPDEL    L VDIS+YRALIRR CK + I  A+++FTLMQGK
Sbjct: 445 WLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGK 504

Query: 171 GILGDSVVYTNLAYAYFKAGKLTLASEMLDDMTKRYLMITVKIYKSLNASFANDSDILRL 350
           G+ GDSVVYT+LAYAYFKAGK   AS+MLD+M KR LMIT+KIY+  +AS+A D  IL L
Sbjct: 505 GMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASYAGDGSILGL 564

Query: 351 FWGHVVERGLITKKVLNLMRQLD*N 425
           FW HV+ER LI+K +L  ++QLD N
Sbjct: 565 FWDHVIERRLISKNILKYIQQLDVN 589


>emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  181 bits (458), Expect = 3e-43
 Identities = 89/145 (61%), Positives = 114/145 (78%), Gaps = 4/145 (2%)
 Frame = +3

Query: 3   WILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKVFTLMQGK 170
           W++D Y +Q N++A++RLPDEL    L VDIS+YRALIRR CK + I  A+++FTLMQGK
Sbjct: 445 WLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGK 504

Query: 171 GILGDSVVYTNLAYAYFKAGKLTLASEMLDDMTKRYLMITVKIYKSLNASFANDSDILRL 350
           G+ GDSVVYT+LAYAYFKAGK   AS+MLD+M KR LMIT+KIY+  +AS+A D  IL L
Sbjct: 505 GMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASYAGDGSILGL 564

Query: 351 FWGHVVERGLITKKVLNLMRQLD*N 425
           FW HV+ER LI+K +L  ++QLD N
Sbjct: 565 FWDHVIERRLISKNILKYIQQLDVN 589


>emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  180 bits (456), Expect = 4e-43
 Identities = 88/143 (61%), Positives = 113/143 (79%), Gaps = 4/143 (2%)
 Frame = +3

Query: 3   WILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKVFTLMQGK 170
           W++D Y +Q N++A++RLPDEL    L VDIS+YRALIRR CK + I  A+++FTLMQGK
Sbjct: 438 WLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGK 497

Query: 171 GILGDSVVYTNLAYAYFKAGKLTLASEMLDDMTKRYLMITVKIYKSLNASFANDSDILRL 350
           G+ GDSVVYT+LAYAYFKAGK   AS+MLD+M KR LMIT+KIY+  +AS+A D  IL L
Sbjct: 498 GMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASYAGDGSILGL 557

Query: 351 FWGHVVERGLITKKVLNLMRQLD 419
           FW HV+ER LI+K +L  ++QLD
Sbjct: 558 FWDHVIERRLISKNILKYIQQLD 580


>ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527353|gb|EEF29498.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 625

 Score =  172 bits (435), Expect = 1e-40
 Identities = 82/126 (65%), Positives = 103/126 (81%), Gaps = 4/126 (3%)
 Frame = +3

Query: 3   WILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKVFTLMQGK 170
           W++DGYCNQ NE+A+L+LPDE     L VD S+YRALIRRFCK E + YA+K+F+LMQ K
Sbjct: 448 WLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEK 507

Query: 171 GILGDSVVYTNLAYAYFKAGKLTLASEMLDDMTKRYLMITVKIYKSLNASFANDSDILRL 350
           G LGDSV+YT+LAYAY+K GK   AS++LD+M KR LMIT+KIY++LNAS+A D+ IL L
Sbjct: 508 GTLGDSVIYTSLAYAYWKLGKANAASDLLDEMYKRRLMITLKIYRALNASYAGDNSILSL 567

Query: 351 FWGHVV 368
           FW HVV
Sbjct: 568 FWNHVV 573


>ref|XP_002329310.1| predicted protein [Populus trichocarpa] gi|222870764|gb|EEF07895.1|
           predicted protein [Populus trichocarpa]
          Length = 593

 Score =  171 bits (432), Expect = 3e-40
 Identities = 82/140 (58%), Positives = 110/140 (78%), Gaps = 4/140 (2%)
 Frame = +3

Query: 3   WILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKVFTLMQGK 170
           W++D YC Q NE+A+++LPDEL    L VD+S+YRALIRRFCK E I  AQ+V  LM+ K
Sbjct: 454 WLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDK 513

Query: 171 GILGDSVVYTNLAYAYFKAGKLTLASEMLDDMTKRYLMITVKIYKSLNASFANDSDILRL 350
           GI GDSVVYT+LAY Y+K GK+ + S++LD+M K+ LMIT+KIY+S NAS+A+D+ IL L
Sbjct: 514 GIFGDSVVYTSLAYGYWKVGKVNVTSDILDEMYKKRLMITLKIYRSFNASYASDNSILSL 573

Query: 351 FWGHVVERGLITKKVLNLMR 410
           FW HV+ER L++K +L  M+
Sbjct: 574 FWNHVLERRLMSKNILKDMQ 593