BLASTX nr result
ID: Coptis24_contig00013842
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00013842 (877 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containi... 181 3e-43 emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera] 181 3e-43 emb|CBI16890.3| unnamed protein product [Vitis vinifera] 180 4e-43 ref|XP_002532893.1| pentatricopeptide repeat-containing protein,... 172 1e-40 ref|XP_002329310.1| predicted protein [Populus trichocarpa] gi|2... 171 3e-40 >ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein At5g38730-like [Vitis vinifera] Length = 590 Score = 181 bits (458), Expect = 3e-43 Identities = 89/145 (61%), Positives = 114/145 (78%), Gaps = 4/145 (2%) Frame = +3 Query: 3 WILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKVFTLMQGK 170 W++D Y +Q N++A++RLPDEL L VDIS+YRALIRR CK + I A+++FTLMQGK Sbjct: 445 WLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGK 504 Query: 171 GILGDSVVYTNLAYAYFKAGKLTLASEMLDDMTKRYLMITVKIYKSLNASFANDSDILRL 350 G+ GDSVVYT+LAYAYFKAGK AS+MLD+M KR LMIT+KIY+ +AS+A D IL L Sbjct: 505 GMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASYAGDGSILGL 564 Query: 351 FWGHVVERGLITKKVLNLMRQLD*N 425 FW HV+ER LI+K +L ++QLD N Sbjct: 565 FWDHVIERRLISKNILKYIQQLDVN 589 >emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera] Length = 590 Score = 181 bits (458), Expect = 3e-43 Identities = 89/145 (61%), Positives = 114/145 (78%), Gaps = 4/145 (2%) Frame = +3 Query: 3 WILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKVFTLMQGK 170 W++D Y +Q N++A++RLPDEL L VDIS+YRALIRR CK + I A+++FTLMQGK Sbjct: 445 WLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGK 504 Query: 171 GILGDSVVYTNLAYAYFKAGKLTLASEMLDDMTKRYLMITVKIYKSLNASFANDSDILRL 350 G+ GDSVVYT+LAYAYFKAGK AS+MLD+M KR LMIT+KIY+ +AS+A D IL L Sbjct: 505 GMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASYAGDGSILGL 564 Query: 351 FWGHVVERGLITKKVLNLMRQLD*N 425 FW HV+ER LI+K +L ++QLD N Sbjct: 565 FWDHVIERRLISKNILKYIQQLDVN 589 >emb|CBI16890.3| unnamed protein product [Vitis vinifera] Length = 653 Score = 180 bits (456), Expect = 4e-43 Identities = 88/143 (61%), Positives = 113/143 (79%), Gaps = 4/143 (2%) Frame = +3 Query: 3 WILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKVFTLMQGK 170 W++D Y +Q N++A++RLPDEL L VDIS+YRALIRR CK + I A+++FTLMQGK Sbjct: 438 WLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGK 497 Query: 171 GILGDSVVYTNLAYAYFKAGKLTLASEMLDDMTKRYLMITVKIYKSLNASFANDSDILRL 350 G+ GDSVVYT+LAYAYFKAGK AS+MLD+M KR LMIT+KIY+ +AS+A D IL L Sbjct: 498 GMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASYAGDGSILGL 557 Query: 351 FWGHVVERGLITKKVLNLMRQLD 419 FW HV+ER LI+K +L ++QLD Sbjct: 558 FWDHVIERRLISKNILKYIQQLD 580 >ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 625 Score = 172 bits (435), Expect = 1e-40 Identities = 82/126 (65%), Positives = 103/126 (81%), Gaps = 4/126 (3%) Frame = +3 Query: 3 WILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKVFTLMQGK 170 W++DGYCNQ NE+A+L+LPDE L VD S+YRALIRRFCK E + YA+K+F+LMQ K Sbjct: 448 WLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEK 507 Query: 171 GILGDSVVYTNLAYAYFKAGKLTLASEMLDDMTKRYLMITVKIYKSLNASFANDSDILRL 350 G LGDSV+YT+LAYAY+K GK AS++LD+M KR LMIT+KIY++LNAS+A D+ IL L Sbjct: 508 GTLGDSVIYTSLAYAYWKLGKANAASDLLDEMYKRRLMITLKIYRALNASYAGDNSILSL 567 Query: 351 FWGHVV 368 FW HVV Sbjct: 568 FWNHVV 573 >ref|XP_002329310.1| predicted protein [Populus trichocarpa] gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa] Length = 593 Score = 171 bits (432), Expect = 3e-40 Identities = 82/140 (58%), Positives = 110/140 (78%), Gaps = 4/140 (2%) Frame = +3 Query: 3 WILDGYCNQGNEDAILRLPDEL----LLVDISIYRALIRRFCKGENIVYAQKVFTLMQGK 170 W++D YC Q NE+A+++LPDEL L VD+S+YRALIRRFCK E I AQ+V LM+ K Sbjct: 454 WLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDK 513 Query: 171 GILGDSVVYTNLAYAYFKAGKLTLASEMLDDMTKRYLMITVKIYKSLNASFANDSDILRL 350 GI GDSVVYT+LAY Y+K GK+ + S++LD+M K+ LMIT+KIY+S NAS+A+D+ IL L Sbjct: 514 GIFGDSVVYTSLAYGYWKVGKVNVTSDILDEMYKKRLMITLKIYRSFNASYASDNSILSL 573 Query: 351 FWGHVVERGLITKKVLNLMR 410 FW HV+ER L++K +L M+ Sbjct: 574 FWNHVLERRLMSKNILKDMQ 593