BLASTX nr result

ID: Coptis24_contig00013824 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013824
         (206 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB62040.1| CjMDR1 [Coptis japonica]                              106   2e-21
dbj|BAM11098.1| ABC protein [Coptis japonica]                          91   1e-16
ref|XP_003520772.1| PREDICTED: ABC transporter B family member 1...    91   1e-16
ref|XP_002301547.1| multidrug/pheromone exporter, MDR family, AB...    90   2e-16
ref|XP_002515187.1| multidrug resistance protein 1, 2, putative ...    88   6e-16

>dbj|BAB62040.1| CjMDR1 [Coptis japonica]
          Length = 1289

 Score =  106 bits (264), Expect = 2e-21
 Identities = 53/54 (98%), Positives = 53/54 (98%)
 Frame = +2

Query: 2   WFDEPEHASGAIGAKLSADASTVRGLVGDALALLVQNAATAVSGLVIAFVANWT 163
           WFDEPEHASGAIGAKLSADASTVRGLVGDALALLVQNAATAV GLVIAFVANWT
Sbjct: 814 WFDEPEHASGAIGAKLSADASTVRGLVGDALALLVQNAATAVCGLVIAFVANWT 867


>dbj|BAM11098.1| ABC protein [Coptis japonica]
          Length = 1292

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 42/53 (79%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   WFDEPEHASGAIGAKLSADASTVRGLVGDALALLVQNAATAVSGLVIAFVANW 160
           WFDEPEH+SGAIGAKLS+DA++VR LVGDAL+LLVQNAA+A++GL IAF ANW
Sbjct: 817 WFDEPEHSSGAIGAKLSSDAASVRSLVGDALSLLVQNAASAIAGLAIAFEANW 869


>ref|XP_003520772.1| PREDICTED: ABC transporter B family member 11-like [Glycine max]
          Length = 1282

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 42/53 (79%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   WFDEPEHASGAIGAKLSADASTVRGLVGDALALLVQNAATAVSGLVIAFVANW 160
           WFDEPEH+SGAIGA+LSADA++VR LVGDAL LLVQN ATA++GL+IAFVA+W
Sbjct: 805 WFDEPEHSSGAIGARLSADAASVRALVGDALGLLVQNIATALAGLIIAFVASW 857


>ref|XP_002301547.1| multidrug/pheromone exporter, MDR family, ABC transporter family
           [Populus trichocarpa] gi|222843273|gb|EEE80820.1|
           multidrug/pheromone exporter, MDR family, ABC
           transporter family [Populus trichocarpa]
          Length = 1224

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 43/53 (81%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   WFDEPEHASGAIGAKLSADASTVRGLVGDALALLVQNAATAVSGLVIAFVANW 160
           WFDEPEH+SGAIGA+LSADA+TVRGLVGD+L+ LVQN A+AV+GLVIAFVA W
Sbjct: 751 WFDEPEHSSGAIGARLSADAATVRGLVGDSLSQLVQNIASAVAGLVIAFVACW 803


>ref|XP_002515187.1| multidrug resistance protein 1, 2, putative [Ricinus communis]
           gi|223545667|gb|EEF47171.1| multidrug resistance protein
           1, 2, putative [Ricinus communis]
          Length = 1269

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 41/53 (77%), Positives = 49/53 (92%)
 Frame = +2

Query: 2   WFDEPEHASGAIGAKLSADASTVRGLVGDALALLVQNAATAVSGLVIAFVANW 160
           WFDEPEH+SGAIGA+LSADA+TVR LVGD+LA +VQN A+AV+GLVIAF A+W
Sbjct: 792 WFDEPEHSSGAIGARLSADAATVRALVGDSLAQMVQNLASAVAGLVIAFTASW 844


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