BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013706
         (458 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containi...   228   4e-58
ref|NP_193221.3| pentatricopeptide repeat-containing protein [Ar...   226   2e-57
gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]                       226   2e-57
ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arab...   223   1e-56
ref|XP_002314694.1| predicted protein [Populus trichocarpa] gi|2...   218   3e-55

>ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  228 bits (581), Expect = 4e-58
 Identities = 106/152 (69%), Positives = 128/152 (84%)
 Frame = +3

Query: 3   NMCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTG 182
           NM R+SIQPNDFTFPC FKAS SL+SP  GKQ+HALA+K GQISDVF+GCSAFDMY K G
Sbjct: 98  NMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAG 157

Query: 183 LRDDSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLN 362
           L +++RK+FDEMP++NIATWN+++SNSV++ R  DA+ AFI FR  G EPN ITFCAFLN
Sbjct: 158 LTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLN 217

Query: 363 ACSDTSDLQLGRQLHGFVIRSGCDGDVRVANG 458
           AC+  S L+LGRQLHGFV++SG + DV VANG
Sbjct: 218 ACAGASYLRLGRQLHGFVLQSGFEADVSVANG 249



 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 4/135 (2%)
 Frame = +3

Query: 12  RESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRD 191
           +E I+P DF       A A L     GK +H LA+K   + ++F+G +  DMY K G  +
Sbjct: 303 KEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIE 362

Query: 192 DSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAF----IGFRRVGGEPNSITFCAFL 359
           D+ + FDEMP++N+ TWN+ I       +   A+  F     G  RV   PN +TF   L
Sbjct: 363 DAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVA--PNYVTFVCVL 420

Query: 360 NACSDTSDLQLGRQL 404
           +ACS    + +G ++
Sbjct: 421 SACSRAGSVNVGMEI 435



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 39/147 (26%), Positives = 65/147 (44%)
 Frame = +3

Query: 15  ESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDD 194
           E  +PN  TF     A A       G+QLH   ++ G  +DV +     D Y K      
Sbjct: 203 EGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGC 262

Query: 195 SRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNACSD 374
           S  +F  +   N  +W S I + V +     A   F+  R+ G EP      + L+AC+ 
Sbjct: 263 SEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAG 322

Query: 375 TSDLQLGRQLHGFVIRSGCDGDVRVAN 455
            S L++G+ +H   +++   G++ V +
Sbjct: 323 LSVLEVGKSVHTLAVKACVVGNIFVGS 349



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
 Frame = +3

Query: 57  KASASLKSPFTGKQLHALAIK-FGQISDVFIGCSAFDMYCKTGLRDDSRKLFDEMPDKNI 233
           +++ S +    G+  HA  IK        FI     +MY K    + ++ L    P++++
Sbjct: 14  ESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSV 73

Query: 234 ATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITF-CAFLNACSDTSDLQLGRQLHG 410
            TW + I+ SV + R   A+  F   RR   +PN  TF CAF  + S  S L +G+Q+H 
Sbjct: 74  VTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPL-VGKQVHA 132

Query: 411 FVIRSGCDGDVRV 449
             +++G   DV V
Sbjct: 133 LAVKAGQISDVFV 145


>ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1 gi|110735893|dbj|BAE99922.1| hypothetical protein
           [Arabidopsis thaliana] gi|332658109|gb|AEE83509.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 684

 Score =  226 bits (575), Expect = 2e-57
 Identities = 107/151 (70%), Positives = 122/151 (80%)
 Frame = +3

Query: 6   MCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGL 185
           M RE + PNDFTFPC FKA ASL+ P TGKQ+HALA+K G+I DVF+GCSAFDMYCKT L
Sbjct: 99  MRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRL 158

Query: 186 RDDSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNA 365
           RDD+RKLFDE+P++N+ TWN+FISNSV D R  +AI AFI FRR+ G PNSITFCAFLNA
Sbjct: 159 RDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNA 218

Query: 366 CSDTSDLQLGRQLHGFVIRSGCDGDVRVANG 458
           CSD   L LG QLHG V+RSG D DV V NG
Sbjct: 219 CSDWLHLNLGMQLHGLVLRSGFDTDVSVCNG 249



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
 Frame = +3

Query: 12  RESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRD 191
           ++ ++ +DF       A A +     G+ +HA A+K      +F+G +  DMY K G  +
Sbjct: 303 KDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIE 362

Query: 192 DSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAF--IGFRRVGGEPNSITFCAFLNA 365
           DS + FDEMP+KN+ T NS I       ++  A+  F  +  R  G  PN +TF + L+A
Sbjct: 363 DSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSA 422

Query: 366 CSDTSDLQLGRQL 404
           CS    ++ G ++
Sbjct: 423 CSRAGAVENGMKI 435



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 36/133 (27%), Positives = 59/133 (44%)
 Frame = +3

Query: 27  PNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDDSRKL 206
           PN  TF     A +       G QLH L ++ G  +DV +     D Y K      S  +
Sbjct: 207 PNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEII 266

Query: 207 FDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNACSDTSDL 386
           F EM  KN  +W S ++  V +     A   ++  R+   E +     + L+AC+  + L
Sbjct: 267 FTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGL 326

Query: 387 QLGRQLHGFVIRS 425
           +LGR +H   +++
Sbjct: 327 ELGRSIHAHAVKA 339


>gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  226 bits (575), Expect = 2e-57
 Identities = 107/151 (70%), Positives = 122/151 (80%)
 Frame = +3

Query: 6   MCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGL 185
           M RE + PNDFTFPC FKA ASL+ P TGKQ+HALA+K G+I DVF+GCSAFDMYCKT L
Sbjct: 49  MRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRL 108

Query: 186 RDDSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNA 365
           RDD+RKLFDE+P++N+ TWN+FISNSV D R  +AI AFI FRR+ G PNSITFCAFLNA
Sbjct: 109 RDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNA 168

Query: 366 CSDTSDLQLGRQLHGFVIRSGCDGDVRVANG 458
           CSD   L LG QLHG V+RSG D DV V NG
Sbjct: 169 CSDWLHLNLGMQLHGLVLRSGFDTDVSVCNG 199



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
 Frame = +3

Query: 12  RESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRD 191
           ++ ++ +DF       A A +     G+ +HA A+K      +F+G +  DMY K G  +
Sbjct: 253 KDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIE 312

Query: 192 DSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAF--IGFRRVGGEPNSITFCAFLNA 365
           DS + FDEMP+KN+ T NS I       ++  A+  F  +  R  G  PN +TF + L+A
Sbjct: 313 DSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSA 372

Query: 366 CSDTSDLQLGRQL 404
           CS    ++ G ++
Sbjct: 373 CSRAGAVENGMKI 385



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 36/133 (27%), Positives = 59/133 (44%)
 Frame = +3

Query: 27  PNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDDSRKL 206
           PN  TF     A +       G QLH L ++ G  +DV +     D Y K      S  +
Sbjct: 157 PNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEII 216

Query: 207 FDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNACSDTSDL 386
           F EM  KN  +W S ++  V +     A   ++  R+   E +     + L+AC+  + L
Sbjct: 217 FTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGL 276

Query: 387 QLGRQLHGFVIRS 425
           +LGR +H   +++
Sbjct: 277 ELGRSIHAHAVKA 289


>ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata] gi|297316113|gb|EFH46536.1| hypothetical protein
           ARALYDRAFT_493409 [Arabidopsis lyrata subsp. lyrata]
          Length = 684

 Score =  223 bits (569), Expect = 1e-56
 Identities = 105/151 (69%), Positives = 122/151 (80%)
 Frame = +3

Query: 6   MCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGL 185
           M RE + PNDFTFPC FKA ASL+ P TGKQ+HALA+K G+I DVF+GCSAFDMYCKT L
Sbjct: 99  MRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRL 158

Query: 186 RDDSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNA 365
           RDD+RKLFDE+P++N+ TWN++ISNSV D R  +AI AFI FRR+GG+PNSITFC FLNA
Sbjct: 159 RDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNA 218

Query: 366 CSDTSDLQLGRQLHGFVIRSGCDGDVRVANG 458
           CSD   L LG Q+HG V RSG D DV V NG
Sbjct: 219 CSDGLLLDLGMQMHGLVFRSGFDTDVSVYNG 249



 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%)
 Frame = +3

Query: 12  RESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRD 191
           +E ++ +DF       A A +     G+ +HA A+K     ++F+G +  DMY K G  +
Sbjct: 303 KEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIE 362

Query: 192 DSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAF--IGFRRVGGEPNSITFCAFLNA 365
           DS + FDEMP+KN+ T NS I       ++  A+  F  +  R  G  PN +TF + L+A
Sbjct: 363 DSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSA 422

Query: 366 CSDTSDLQLGRQL 404
           CS    ++ G ++
Sbjct: 423 CSRAGAVENGMKI 435


>ref|XP_002314694.1| predicted protein [Populus trichocarpa] gi|222863734|gb|EEF00865.1|
           predicted protein [Populus trichocarpa]
          Length = 631

 Score =  218 bits (556), Expect = 3e-55
 Identities = 102/151 (67%), Positives = 125/151 (82%)
 Frame = +3

Query: 6   MCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGL 185
           M RE+I+PNDFTFPC FKAS +L  PF GKQ+HA+A+K GQI+D F+GCSAFDMY KTGL
Sbjct: 49  MRRENIKPNDFTFPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGL 108

Query: 186 RDDSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNA 365
           + ++++LFDEMP +N+A WN++ISN+V+D R   AI+ FI FRRVGGEP+ ITFCAFLNA
Sbjct: 109 KFEAQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNA 168

Query: 366 CSDTSDLQLGRQLHGFVIRSGCDGDVRVANG 458
           C+D   L LGRQLHG VIRSG +GDV VANG
Sbjct: 169 CADARCLDLGRQLHGLVIRSGFEGDVSVANG 199



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 39/131 (29%), Positives = 66/131 (50%)
 Frame = +3

Query: 12  RESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRD 191
           +E I+  D+       A A +     G+ +HALA+K     D+F+G +  DMY K G  +
Sbjct: 253 KEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIE 312

Query: 192 DSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNACS 371
           D  ++F EMP++N+ +WN+ IS       +  A+  F   +      N +T    L+ACS
Sbjct: 313 DCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQS-EAVANYVTLICVLSACS 371

Query: 372 DTSDLQLGRQL 404
               ++LG ++
Sbjct: 372 RGGAVKLGNEI 382



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 35/144 (24%), Positives = 66/144 (45%)
 Frame = +3

Query: 24  QPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDDSRK 203
           +P+  TF     A A  +    G+QLH L I+ G   DV +     D+Y K    + +  
Sbjct: 156 EPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEM 215

Query: 204 LFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNACSDTSD 383
           +F+ M  +N  +W + ++    +     A   F+  R+ G E       + ++A +  S 
Sbjct: 216 VFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISG 275

Query: 384 LQLGRQLHGFVIRSGCDGDVRVAN 455
           L+ GR +H   +++  +GD+ V +
Sbjct: 276 LEFGRSVHALAVKACVEGDIFVGS 299