BLASTX nr result
ID: Coptis24_contig00013706
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00013706 (458 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containi... 228 4e-58 ref|NP_193221.3| pentatricopeptide repeat-containing protein [Ar... 226 2e-57 gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana] 226 2e-57 ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arab... 223 1e-56 ref|XP_002314694.1| predicted protein [Populus trichocarpa] gi|2... 218 3e-55 >ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14850-like [Vitis vinifera] Length = 684 Score = 228 bits (581), Expect = 4e-58 Identities = 106/152 (69%), Positives = 128/152 (84%) Frame = +3 Query: 3 NMCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTG 182 NM R+SIQPNDFTFPC FKAS SL+SP GKQ+HALA+K GQISDVF+GCSAFDMY K G Sbjct: 98 NMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAG 157 Query: 183 LRDDSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLN 362 L +++RK+FDEMP++NIATWN+++SNSV++ R DA+ AFI FR G EPN ITFCAFLN Sbjct: 158 LTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLN 217 Query: 363 ACSDTSDLQLGRQLHGFVIRSGCDGDVRVANG 458 AC+ S L+LGRQLHGFV++SG + DV VANG Sbjct: 218 ACAGASYLRLGRQLHGFVLQSGFEADVSVANG 249 Score = 88.2 bits (217), Expect = 6e-16 Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 4/135 (2%) Frame = +3 Query: 12 RESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRD 191 +E I+P DF A A L GK +H LA+K + ++F+G + DMY K G + Sbjct: 303 KEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIE 362 Query: 192 DSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAF----IGFRRVGGEPNSITFCAFL 359 D+ + FDEMP++N+ TWN+ I + A+ F G RV PN +TF L Sbjct: 363 DAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVA--PNYVTFVCVL 420 Query: 360 NACSDTSDLQLGRQL 404 +ACS + +G ++ Sbjct: 421 SACSRAGSVNVGMEI 435 Score = 58.9 bits (141), Expect = 4e-07 Identities = 39/147 (26%), Positives = 65/147 (44%) Frame = +3 Query: 15 ESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDD 194 E +PN TF A A G+QLH ++ G +DV + D Y K Sbjct: 203 EGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGC 262 Query: 195 SRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNACSD 374 S +F + N +W S I + V + A F+ R+ G EP + L+AC+ Sbjct: 263 SEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAG 322 Query: 375 TSDLQLGRQLHGFVIRSGCDGDVRVAN 455 S L++G+ +H +++ G++ V + Sbjct: 323 LSVLEVGKSVHTLAVKACVVGNIFVGS 349 Score = 55.5 bits (132), Expect = 5e-06 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 2/133 (1%) Frame = +3 Query: 57 KASASLKSPFTGKQLHALAIK-FGQISDVFIGCSAFDMYCKTGLRDDSRKLFDEMPDKNI 233 +++ S + G+ HA IK FI +MY K + ++ L P++++ Sbjct: 14 ESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSV 73 Query: 234 ATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITF-CAFLNACSDTSDLQLGRQLHG 410 TW + I+ SV + R A+ F RR +PN TF CAF + S S L +G+Q+H Sbjct: 74 VTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPL-VGKQVHA 132 Query: 411 FVIRSGCDGDVRV 449 +++G DV V Sbjct: 133 LAVKAGQISDVFV 145 >ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE 1 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana] gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 684 Score = 226 bits (575), Expect = 2e-57 Identities = 107/151 (70%), Positives = 122/151 (80%) Frame = +3 Query: 6 MCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGL 185 M RE + PNDFTFPC FKA ASL+ P TGKQ+HALA+K G+I DVF+GCSAFDMYCKT L Sbjct: 99 MRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRL 158 Query: 186 RDDSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNA 365 RDD+RKLFDE+P++N+ TWN+FISNSV D R +AI AFI FRR+ G PNSITFCAFLNA Sbjct: 159 RDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNA 218 Query: 366 CSDTSDLQLGRQLHGFVIRSGCDGDVRVANG 458 CSD L LG QLHG V+RSG D DV V NG Sbjct: 219 CSDWLHLNLGMQLHGLVLRSGFDTDVSVCNG 249 Score = 75.9 bits (185), Expect = 3e-12 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 2/133 (1%) Frame = +3 Query: 12 RESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRD 191 ++ ++ +DF A A + G+ +HA A+K +F+G + DMY K G + Sbjct: 303 KDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIE 362 Query: 192 DSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAF--IGFRRVGGEPNSITFCAFLNA 365 DS + FDEMP+KN+ T NS I ++ A+ F + R G PN +TF + L+A Sbjct: 363 DSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSA 422 Query: 366 CSDTSDLQLGRQL 404 CS ++ G ++ Sbjct: 423 CSRAGAVENGMKI 435 Score = 56.2 bits (134), Expect = 3e-06 Identities = 36/133 (27%), Positives = 59/133 (44%) Frame = +3 Query: 27 PNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDDSRKL 206 PN TF A + G QLH L ++ G +DV + D Y K S + Sbjct: 207 PNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEII 266 Query: 207 FDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNACSDTSDL 386 F EM KN +W S ++ V + A ++ R+ E + + L+AC+ + L Sbjct: 267 FTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGL 326 Query: 387 QLGRQLHGFVIRS 425 +LGR +H +++ Sbjct: 327 ELGRSIHAHAVKA 339 >gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana] Length = 634 Score = 226 bits (575), Expect = 2e-57 Identities = 107/151 (70%), Positives = 122/151 (80%) Frame = +3 Query: 6 MCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGL 185 M RE + PNDFTFPC FKA ASL+ P TGKQ+HALA+K G+I DVF+GCSAFDMYCKT L Sbjct: 49 MRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRL 108 Query: 186 RDDSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNA 365 RDD+RKLFDE+P++N+ TWN+FISNSV D R +AI AFI FRR+ G PNSITFCAFLNA Sbjct: 109 RDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNA 168 Query: 366 CSDTSDLQLGRQLHGFVIRSGCDGDVRVANG 458 CSD L LG QLHG V+RSG D DV V NG Sbjct: 169 CSDWLHLNLGMQLHGLVLRSGFDTDVSVCNG 199 Score = 75.9 bits (185), Expect = 3e-12 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 2/133 (1%) Frame = +3 Query: 12 RESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRD 191 ++ ++ +DF A A + G+ +HA A+K +F+G + DMY K G + Sbjct: 253 KDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIE 312 Query: 192 DSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAF--IGFRRVGGEPNSITFCAFLNA 365 DS + FDEMP+KN+ T NS I ++ A+ F + R G PN +TF + L+A Sbjct: 313 DSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSA 372 Query: 366 CSDTSDLQLGRQL 404 CS ++ G ++ Sbjct: 373 CSRAGAVENGMKI 385 Score = 56.2 bits (134), Expect = 3e-06 Identities = 36/133 (27%), Positives = 59/133 (44%) Frame = +3 Query: 27 PNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDDSRKL 206 PN TF A + G QLH L ++ G +DV + D Y K S + Sbjct: 157 PNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEII 216 Query: 207 FDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNACSDTSDL 386 F EM KN +W S ++ V + A ++ R+ E + + L+AC+ + L Sbjct: 217 FTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGL 276 Query: 387 QLGRQLHGFVIRS 425 +LGR +H +++ Sbjct: 277 ELGRSIHAHAVKA 289 >ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp. lyrata] gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp. lyrata] Length = 684 Score = 223 bits (569), Expect = 1e-56 Identities = 105/151 (69%), Positives = 122/151 (80%) Frame = +3 Query: 6 MCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGL 185 M RE + PNDFTFPC FKA ASL+ P TGKQ+HALA+K G+I DVF+GCSAFDMYCKT L Sbjct: 99 MRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRL 158 Query: 186 RDDSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNA 365 RDD+RKLFDE+P++N+ TWN++ISNSV D R +AI AFI FRR+GG+PNSITFC FLNA Sbjct: 159 RDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNA 218 Query: 366 CSDTSDLQLGRQLHGFVIRSGCDGDVRVANG 458 CSD L LG Q+HG V RSG D DV V NG Sbjct: 219 CSDGLLLDLGMQMHGLVFRSGFDTDVSVYNG 249 Score = 78.2 bits (191), Expect = 6e-13 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Frame = +3 Query: 12 RESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRD 191 +E ++ +DF A A + G+ +HA A+K ++F+G + DMY K G + Sbjct: 303 KEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIE 362 Query: 192 DSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAF--IGFRRVGGEPNSITFCAFLNA 365 DS + FDEMP+KN+ T NS I ++ A+ F + R G PN +TF + L+A Sbjct: 363 DSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSA 422 Query: 366 CSDTSDLQLGRQL 404 CS ++ G ++ Sbjct: 423 CSRAGAVENGMKI 435 >ref|XP_002314694.1| predicted protein [Populus trichocarpa] gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa] Length = 631 Score = 218 bits (556), Expect = 3e-55 Identities = 102/151 (67%), Positives = 125/151 (82%) Frame = +3 Query: 6 MCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGL 185 M RE+I+PNDFTFPC FKAS +L PF GKQ+HA+A+K GQI+D F+GCSAFDMY KTGL Sbjct: 49 MRRENIKPNDFTFPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGL 108 Query: 186 RDDSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNA 365 + ++++LFDEMP +N+A WN++ISN+V+D R AI+ FI FRRVGGEP+ ITFCAFLNA Sbjct: 109 KFEAQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNA 168 Query: 366 CSDTSDLQLGRQLHGFVIRSGCDGDVRVANG 458 C+D L LGRQLHG VIRSG +GDV VANG Sbjct: 169 CADARCLDLGRQLHGLVIRSGFEGDVSVANG 199 Score = 71.6 bits (174), Expect = 6e-11 Identities = 39/131 (29%), Positives = 66/131 (50%) Frame = +3 Query: 12 RESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRD 191 +E I+ D+ A A + G+ +HALA+K D+F+G + DMY K G + Sbjct: 253 KEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIE 312 Query: 192 DSRKLFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNACS 371 D ++F EMP++N+ +WN+ IS + A+ F + N +T L+ACS Sbjct: 313 DCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQS-EAVANYVTLICVLSACS 371 Query: 372 DTSDLQLGRQL 404 ++LG ++ Sbjct: 372 RGGAVKLGNEI 382 Score = 55.1 bits (131), Expect = 6e-06 Identities = 35/144 (24%), Positives = 66/144 (45%) Frame = +3 Query: 24 QPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDDSRK 203 +P+ TF A A + G+QLH L I+ G DV + D+Y K + + Sbjct: 156 EPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEM 215 Query: 204 LFDEMPDKNIATWNSFISNSVVDARIYDAINAFIGFRRVGGEPNSITFCAFLNACSDTSD 383 +F+ M +N +W + ++ + A F+ R+ G E + ++A + S Sbjct: 216 VFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISG 275 Query: 384 LQLGRQLHGFVIRSGCDGDVRVAN 455 L+ GR +H +++ +GD+ V + Sbjct: 276 LEFGRSVHALAVKACVEGDIFVGS 299