BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013645
         (1561 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    69   4e-19
ref|XP_002319850.1| predicted protein [Populus trichocarpa] gi|2...    77   9e-16
ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|2...    73   9e-16
ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|2...    77   2e-15
ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group] g...    70   2e-13

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 68.9 bits (167), Expect(4) = 4e-19
 Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
 Frame = -2

Query: 507 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAF 328
           VL   EKR  R P  L   +F N  NA  L     LG   TW N ++G+  +A ++DRA 
Sbjct: 141 VLGAHEKRRRRPPPPLSCIDFMNWSNANLLHHLPTLGAFYTWSNGRLGSDNVALRLDRAI 200

Query: 327 YNNVWNIRFNSWKYKVWSRCG--------SDHSPLVGELKVVPRATNTPFRFNICWLSHP 172
            N  W    N W+    S  G        SDH PL+  +       +  F+F   W  H 
Sbjct: 201 CNEEW---VNFWRSSSCSALGNSALVRHQSDHHPLLMSMDFCTSQRSGNFKFFKTWTEHE 257

Query: 171 TFMDVVRHNWNQNIIGGPMVVLMKKLHRLKR 79
               +V  NW+++  G  M  L  KL  +K+
Sbjct: 258 DCRRIVAENWSKHTRGHGMTRLQAKLKHMKQ 288



 Score = 40.8 bits (94), Expect(4) = 4e-19
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
 Frame = -1

Query: 700 WIIHKRELVVDLIHMSRQQITVWVG----DAFVSAVHAHCPMNLRRVLWAELQAMN--FG 539
           W +  RE+   ++ +S Q I + +       +V+AV+A      RR LWAEL  +   F 
Sbjct: 70  WALWGREVSAIVMFISDQCIALEISCHQSTVYVAAVYASTFYLKRRQLWAELTNLQGCFQ 129

Query: 538 DPWLVIGDFNCL 503
            PWL IGDFN +
Sbjct: 130 GPWLFIGDFNAV 141



 Score = 27.7 bits (60), Expect(4) = 4e-19
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 68  WNRLVFGNIDSNVKKTQEEL 9
           WNR VFG++D  V+   EE+
Sbjct: 293 WNRTVFGDVDRKVRMAVEEV 312



 Score = 24.3 bits (51), Expect(4) = 4e-19
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 909 MRVLYWNIRGVRKDSTLERIRDFVKSCSFDLICLEESLV 793
           M +LYW +RG+    T   +++F       LI + E ++
Sbjct: 1   MIILYWTVRGIDNVDTKIALKNFFNCHKPLLIFVAEPMI 39


>ref|XP_002319850.1| predicted protein [Populus trichocarpa] gi|222858226|gb|EEE95773.1|
            predicted protein [Populus trichocarpa]
          Length = 809

 Score = 76.6 bits (187), Expect(2) = 9e-16
 Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
 Frame = -2

Query: 507  VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAF 328
            + + S++ GG       M+     I    + +  + GM  TW +NQ     I  K+DR  
Sbjct: 669  IRNQSDRLGGSTTWAGTMDRLDTCIREAKVDDLRYSGMHYTW-SNQCPENLIMRKLDRVL 727

Query: 327  YNNVWNIRFNSWKYKVWSRCGSDHSPLVGELKVVPRATNT--PFRFNICWLSHPTFMDVV 154
             N  WN++F   + +      SDHSP+V  +KV+    N   PFRF   W+ H  FM +V
Sbjct: 728  VNEKWNLKFPLSEARFLPSGMSDHSPMV--VKVIGNDQNIKKPFRFFDMWMDHDEFMPLV 785

Query: 153  RHNWNQNIIGGPMVVLMKKLHRLK 82
            +  W+QN  G PM  L  KL +LK
Sbjct: 786  KKVWDQNSGGCPMYQLCCKLRKLK 809



 Score = 34.7 bits (78), Expect(2) = 9e-16
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
 Frame = -1

Query: 712 QGE*WIIHKRELV-VDLIHMSRQQITVWVG------DAFVSAVHAHCPMNLRRVLWAELQ 554
           +G  W+    + V VD+  MS Q I V V           S ++     +LR  LW+++ 
Sbjct: 590 RGRIWVCWNADTVKVDVYGMSDQAIHVSVTILATNISFNTSIIYGDNNASLREALWSDIV 649

Query: 553 AMNFG---DPWLVIGDFNCLKLQ 494
           + + G    PW+++GDFN ++ Q
Sbjct: 650 SRSDGWESTPWILMGDFNAIRNQ 672


>ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|222832345|gb|EEE70822.1|
           predicted protein [Populus trichocarpa]
          Length = 349

 Score = 73.2 bits (178), Expect(3) = 9e-16
 Identities = 48/145 (33%), Positives = 68/145 (46%), Gaps = 2/145 (1%)
 Frame = -2

Query: 507 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAF 328
           + + S+K GG       M      I    + +  + GM  TW +NQ     I  K+DR  
Sbjct: 145 IRNQSDKLGGSTTWAGTMHRLDTCIREAKVDDLWYSGMHYTW-SNQCPENLIMRKLDRVL 203

Query: 327 YNNVWNIRFNSWKYKVWSRCGSDHSPLVGELKVVPRATNT--PFRFNICWLSHPTFMDVV 154
            N  WN+ F   + +      SDHSP+V  +KV+    N   PFRF   W+ H  FM +V
Sbjct: 204 VNEKWNLNFPLSEARFLPSGMSDHSPMV--VKVIGNDQNIKKPFRFFDMWMDHDEFMPLV 261

Query: 153 RHNWNQNIIGGPMVVLMKKLHRLKR 79
           +  W+QN  G PM  L  KL + K+
Sbjct: 262 KKVWDQNSGGCPMYQLCCKLRKQKQ 286



 Score = 35.0 bits (79), Expect(3) = 9e-16
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
 Frame = -1

Query: 712 QGE*WIIHKRELV-VDLIHMSRQQITVWVG------DAFVSAVHAHCPMNLRRVLWAELQ 554
           +G  W+    + V VD+  MS Q I V V           S ++     +LR  LW+++ 
Sbjct: 66  RGRIWVCWNADTVKVDVFGMSDQAIHVSVTILATNISFNTSIIYGDNNASLREALWSDIV 125

Query: 553 AMNFG---DPWLVIGDFNCLKLQ 494
           + + G    PW+++GDFN ++ Q
Sbjct: 126 SRSDGWESTPWILMGDFNAIRNQ 148



 Score = 22.7 bits (47), Expect(3) = 9e-16
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 80  ELKAWNRLVFGNIDSNVKKTQEEL 9
           ELK +N   F NI   VK  + E+
Sbjct: 287 ELKLFNMAHFSNISDRVKDAKNEM 310


>ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|222873371|gb|EEF10502.1|
           predicted protein [Populus trichocarpa]
          Length = 819

 Score = 77.4 bits (189), Expect(2) = 2e-15
 Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
 Frame = -2

Query: 507 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAF 328
           + + S++ GG       M+     I    + +  + GM  TW +NQ     I  K+DR  
Sbjct: 522 IRNQSDRLGGSTTWAGTMDRLDTCIREAKVDDLRYSGMHYTW-SNQCPENLIMRKLDRVL 580

Query: 327 YNNVWNIRFNSWKYKVWSRCGSDHSPLVGELKVVPRATNT--PFRFNICWLSHPTFMDVV 154
            N  WN++F   + +      SDHSP+V  +KV+    N   PFRF   W+ H  FM +V
Sbjct: 581 VNEKWNLKFPLSEARFLPSGMSDHSPMV--VKVIGNDQNKKKPFRFFDMWMDHDEFMPLV 638

Query: 153 RHNWNQNIIGGPMVVLMKKLHRLKR 79
           +  W+QN  G PM  L  KL +LK+
Sbjct: 639 KKVWDQNSRGCPMYQLCCKLRKLKQ 663



 Score = 32.3 bits (72), Expect(2) = 2e-15
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
 Frame = -1

Query: 712 QGE*WIIHKRELV-VDLIHMSRQQITVWVG------DAFVSAVHAHCPMNLRRVLWAELQ 554
           +G  W+    + V VD+  MS Q I V V           S ++     +LR  LW+++ 
Sbjct: 443 RGRIWVCWNADTVKVDVFGMSDQAIHVSVTILATNISFNTSIIYGDNNASLREALWSDIV 502

Query: 553 AMNFG---DPWLVIGDFNCLKLQ 494
           + + G     W++IGDFN ++ Q
Sbjct: 503 SRSDGWESTLWILIGDFNAIRNQ 525


>ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group]
           gi|113611795|dbj|BAF22173.1| Os07g0613900 [Oryza sativa
           Japonica Group]
          Length = 1453

 Score = 70.1 bits (170), Expect(2) = 2e-13
 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
 Frame = -2

Query: 507 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNN-QIGAGRIASKIDRA 331
           +L  +EK+GGR   +  M++F +T+  C LI+    G   TW NN     G I   +DRA
Sbjct: 410 ILVAAEKQGGRPKCQAQMDKFRDTLADCGLIDIGFEGDMFTWRNNSHTEEGYIREHLDRA 469

Query: 330 FYNNVWNIRFNSWKYKVWSRCGSDHSPLV----GELKVVPRATNTPFRFNICWLSHPTFM 163
             N  W ++F S++        SDH P++    G  K V +  ++ FRF   WL+     
Sbjct: 470 VANQEWRVKFPSFRVVNGDPRHSDHRPVIITTCGGRKGVMQRGSSSFRFEAAWLAEEKCR 529

Query: 162 DVVRHNW 142
           +VV  NW
Sbjct: 530 EVVSENW 536



 Score = 33.5 bits (75), Expect(2) = 2e-13
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
 Frame = -1

Query: 697 IIHKRELVVDLIHMSRQQITVWV-----GDAFVSAVHAHCPMNLRRVLWAELQ--AMNFG 539
           ++ +R + V L  MS+  I V +     G      V+     +LR   W  L+  AMN  
Sbjct: 339 VLWRRRIDVSLRSMSKYHIDVDIEEGGGGSWRFIGVYGEAQSDLRFKTWDTLRSLAMNPA 398

Query: 538 DPWLVIGDFN 509
            PWL+ GDFN
Sbjct: 399 QPWLMAGDFN 408