BLASTX nr result

ID: Coptis24_contig00013639 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013639
         (1710 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316602.1| predicted protein [Populus trichocarpa] gi|2...   141   6e-31
ref|NP_567421.1| F-box/LRR-repeat protein [Arabidopsis thaliana]...   135   3e-29
emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]   133   2e-28
ref|XP_002316601.1| predicted protein [Populus trichocarpa] gi|2...   132   4e-28
ref|NP_001190724.1| F-box/LRR-repeat protein [Arabidopsis thalia...   125   3e-26

>ref|XP_002316602.1| predicted protein [Populus trichocarpa] gi|222859667|gb|EEE97214.1|
            predicted protein [Populus trichocarpa]
          Length = 460

 Score =  141 bits (355), Expect = 6e-31
 Identities = 99/312 (31%), Positives = 156/312 (50%), Gaps = 5/312 (1%)
 Frame = +2

Query: 194  KDLEMGRQKIGEGGDRISFLPEGIIHCILSFLPTKYAVGTSVLSTRWRYLWTFVTNIDLC 373
            K+ + G + IG        LP+ ++  ILSFL T+ AV TS+LS +W +LW   TN+   
Sbjct: 19   KETDSGEKSIGN-------LPDALLEHILSFLSTEAAVRTSILSKKWLHLWKSTTNLTF- 70

Query: 374  DQLLFSDSMNEELVHKTIFMNFVERVLLLNDAPFIHKFCLSSKTVLDKSRINAWISNVLK 553
                       +   + +FM+FV+RVL L     I +F LS +   D SR+  WIS  + 
Sbjct: 71   --------FGLKSPKRKLFMDFVDRVLALRGPSNIVQFYLSCEVKDDPSRVGTWISAAVN 122

Query: 554  RKVQVLILNLCVGLEPLVFPHTLFNWESLTIIKLCADSVLKVPASISFSRLKVLHLDDIE 733
            R V+ L L L       V PH LFN E+LT +++    +LK+P+SIS S LK+L+L ++ 
Sbjct: 123  RNVKDLYLELRDFEASFVLPHCLFNCETLTELEINMPYILKLPSSISLSCLKILNLYEV- 181

Query: 734  VFCDQAIQHVSLSCPILEEVVFLNCRWLKMKVINISAPVLKRLVIVDILERKD-SFHDCE 910
            +F D        S P L E+    C W+ +  ++ISAP L+ L I +  +    S   C 
Sbjct: 182  IFTDDHSTQQLFSLPNLVELEIHECNWMNLVAVSISAPKLQSLDIHEPCQSSPASLGGCH 241

Query: 911  IKVYAESLVSLELDCNMAYELSLYNLFSLFNASIDICST----RKIGQRVDKLLKAICDV 1078
            ++++   L    +   ++ +  LY   S+    I I S     R+   R  KLL+ I   
Sbjct: 242  VRIFGTHLADFTIIGTLSNDYCLYE-SSVVETCISIFSAADKPRQTAYRASKLLEGISSA 300

Query: 1079 KDLRLSDDSIEV 1114
            + L L+ + ++V
Sbjct: 301  QSLCLTTNVVDV 312


>ref|NP_567421.1| F-box/LRR-repeat protein [Arabidopsis thaliana]
            gi|75249810|sp|Q94B46.1|FBL74_ARATH RecName:
            Full=F-box/LRR-repeat protein At4g14096
            gi|14596145|gb|AAK68800.1| Unknown protein [Arabidopsis
            thaliana] gi|22136112|gb|AAM91134.1| unknown protein
            [Arabidopsis thaliana] gi|332657971|gb|AEE83371.1|
            F-box/LRR-repeat protein [Arabidopsis thaliana]
          Length = 468

 Score =  135 bits (340), Expect = 3e-29
 Identities = 108/304 (35%), Positives = 159/304 (52%), Gaps = 11/304 (3%)
 Frame = +2

Query: 236  DRISFLPEGIIHCILSFLPTKYAVGTSVLSTRWRYLWTFVTNIDLCDQLLFSDSMNEELV 415
            D IS LPE I   ILSFLPTK A  TSVLS +WRYL+ FV N+DL D+ ++ +  NE  V
Sbjct: 8    DIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDL-DESVYLNPENETEV 66

Query: 416  HKTIFMNFVERVLLLNDAPFIHKFCLSSKTVLDKSRINAWISNVLKRKVQVLILNLCVGL 595
              + FM+FV+RVL L     +HKF L     ++  RI  WI+NVL+R V  L L++ +  
Sbjct: 67   SSS-FMDFVDRVLALQGNSPLHKFSLKIGDGVEPDRIIPWINNVLERGVSDLDLHVYMET 125

Query: 596  EPLVFPHTLFNWESLTIIKLCADSVLKVPASISFSRLKVLHLDDIEVFCDQAIQHVSL-- 769
            E  VFP  +F  ++L  +KL    +L+    +   +LK L++D    F    I    L  
Sbjct: 126  E-FVFPSEMFLSKTLVRLKLMLYPLLEF-EDVYLPKLKTLYIDSC-YFEKYGIGLTKLLS 182

Query: 770  SCPILEEVVFLNCRWLKMKVINISAPVLKRLVIVDILERKDSFHDCEIKVYAESLVSLEL 949
             CPILE++V  +  W      ++S P LKRL      + +D F    + +   +LV L+ 
Sbjct: 183  GCPILEDLVLDDIPWCTWDFASVSVPTLKRLTF--STQVRDEFPK-SVSIDTPNLVYLKF 239

Query: 950  DCNMAYELSLYNLFSLFNASIDI---------CSTRKIGQRVDKLLKAICDVKDLRLSDD 1102
               +A +    N  SL  A ID+              +G   D +++ IC+VK L LS +
Sbjct: 240  TDTVAGKYPKVNFDSLVEAHIDLRLLQGHQGYGENDMVGNATDFIMR-ICNVKTLYLSSN 298

Query: 1103 SIEV 1114
            +++V
Sbjct: 299  TLQV 302


>emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]
          Length = 607

 Score =  133 bits (334), Expect = 2e-28
 Identities = 95/270 (35%), Positives = 142/270 (52%), Gaps = 6/270 (2%)
 Frame = +2

Query: 227  EGGDRISFLPEGIIHCILSFLPTKYAVGTSVLSTRWRYLWTFVTNIDLCDQLLFSDSMNE 406
            E  D IS LP+ ++  ILSFLPTK+AVGTS+LS RWRYLW  V  +D  D+L  + S   
Sbjct: 7    ESRDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLV 66

Query: 407  ELVHKTI-FMNFVERVLLLNDAPFIHKFCLSSKTVLDKSRINAWISNVLKRKVQVLILNL 583
            EL  + I F NFV+ VL  ++   I KF L  +   +   + +WI   L+R+VQ L L+L
Sbjct: 67   ELEERIIMFQNFVDGVLRHSEVSCIKKFRLGYRD-NNLDSVYSWICIALERRVQELDLHL 125

Query: 584  CVGLEPLVFPHTLFNWESLTIIKLCADSVLKVPASISFSRLKVLHLDDIEVFCDQAIQHV 763
             +    +  P   F  ++L ++KL     L +P ++    LK LHL  +E   D +IQ +
Sbjct: 126  LIDWR-VELPPMFFICKTLVVVKLSCALFLDIPTTVWLPSLKALHLKSVEYSDDDSIQKL 184

Query: 764  SLSCPILEEVVFLNCRWLKMKVINISAPVLKRLVIVDILE-----RKDSFHDCEIKVYAE 928
               CP+LEE+V          V+N+S P LK L I    +      +    D ++ V A 
Sbjct: 185  LSGCPVLEELVIEREERDNQWVVNVSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVDAP 244

Query: 929  SLVSLELDCNMAYELSLYNLFSLFNASIDI 1018
            +L  L +   ++ +  + +L SL  A ID+
Sbjct: 245  NLEYLSITDYLSKDYFVKDLPSLVKAFIDV 274


>ref|XP_002316601.1| predicted protein [Populus trichocarpa] gi|222859666|gb|EEE97213.1|
            predicted protein [Populus trichocarpa]
          Length = 420

 Score =  132 bits (331), Expect = 4e-28
 Identities = 100/303 (33%), Positives = 151/303 (49%), Gaps = 8/303 (2%)
 Frame = +2

Query: 230  GGDRISFLPEGIIHCILSFLPTKYAVGTSVLSTRWRYLWTFVTNIDLCDQLLFSDSMNEE 409
            GG  I+ LP+ ++  ILSFL TK AV TS+LS +W +LW  ++N++   Q  F       
Sbjct: 36   GGKSINDLPDALLQHILSFLETKDAVRTSILSRKWEHLWKSLSNLEF-HQCYFK------ 88

Query: 410  LVHKTIFMNFVERVLLLNDAPFIHKFCLSSKTVLDKSRINAWISNVLKRKVQVLILNLCV 589
               + IFMN VERVLLL D+  I KF LS   + D +R   W+S  + R V+ L +N   
Sbjct: 89   -AKRKIFMNSVERVLLLRDSSNIEKFTLSC-GIDDATRTRTWVSAAVNRNVKELCVNFYE 146

Query: 590  G--LEPLVFPHTLFNWESLTIIKLCADSVLKVPASISFSRLKVLHLDDIEVFCDQAIQHV 763
            G   E  V P  LF   +LT +K+ +  VL++ +SIS   LK+L L  + VF D+     
Sbjct: 147  GGESESFVSPLCLFTCATLTKLKITSHGVLRLSSSISLPCLKILSLQHV-VFPDEDSTQQ 205

Query: 764  SLSCPILEEVVFLNCRWLKMKVINISAPVLKRLVIVDILERKD--SFHDCEIKVYAESLV 937
             L+   LE++      W  +K I ISAP L+ L I + + R D      C + ++  +L 
Sbjct: 206  ILNLRTLEKLKISYYDWKNLKAITISAPKLRSLDICE-MHRNDLRGSDACHVMIFGTALT 264

Query: 938  SLELDCNMAYELSLYNLFSLFNASIDICS----TRKIGQRVDKLLKAICDVKDLRLSDDS 1105
                      +  L+   SL  A   +      +R+I  R  K +  +  VK L L+ D 
Sbjct: 265  FFSFSGGFWDDYCLFKSSSLVEAYFHVYGCYERSREIAHRAYKHIVGLSTVKHLTLTPDV 324

Query: 1106 IEV 1114
            +++
Sbjct: 325  LKI 327


>ref|NP_001190724.1| F-box/LRR-repeat protein [Arabidopsis thaliana]
            gi|332657973|gb|AEE83373.1| F-box/LRR-repeat protein
            [Arabidopsis thaliana]
          Length = 443

 Score =  125 bits (314), Expect = 3e-26
 Identities = 102/310 (32%), Positives = 156/310 (50%), Gaps = 17/310 (5%)
 Frame = +2

Query: 236  DRISFLPEGIIHCILSFLPTKYAVGTSVLSTRWRYLWTFVTNIDLCDQLLFSDSMNEELV 415
            D IS LP+ I   ILSFLPTK A  TSVLS +WRYL+ FV N+DL D +  +     E+ 
Sbjct: 8    DVISSLPDDISSHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDDSVYLNPENETEI- 66

Query: 416  HKTIFMNFVERVLLLNDAPFIHKFCLSSKTVLDKSRINAWISNVLKRKVQVLILNLCVGL 595
              T FM+FV+RVL L     +HKF L     +D  RI  WI+NVL+R V  L L+L +  
Sbjct: 67   -STSFMDFVDRVLALQGNSPLHKFSLKIGDGIDPVRIIPWINNVLERGVSDLDLHLNLES 125

Query: 596  EPLVFPHTLFNWESLTIIKLCADSVLKVPA-SISFSRLKVLHLDDIEVFCDQAIQHVSL- 769
            E  + P  ++  ++L  +KL       +    +   +LK L+++    F +  +    L 
Sbjct: 126  E-FLLPSQVYLCKTLVWLKLRFGLYPTIDVEDVHLPKLKTLYIEATH-FEEHGVGLTKLL 183

Query: 770  -SCPILEEVVFLNCRWLKMKVINISAPVLKRLVIVDILERKDSFHDCEIKVYAESLVSLE 946
              CP+LE++V  +  W      ++S P LKRL      + +D F    + +   +LV L+
Sbjct: 184  SGCPMLEDLVLDDISWFIWDFASVSVPTLKRLRF--SWQERDEFPK-SVLLDTPNLVYLK 240

Query: 947  LDCNMAYELSLYNLFSLFNASIDICSTR--------------KIGQRVDKLLKAICDVKD 1084
                +A +    NL SL  A ID+   +               +G   D +++ IC+VK 
Sbjct: 241  FTDTVAGKYPKVNLDSLVEAHIDLRLLKPLLINYHQGYGENDMVGNATDFIMR-ICNVKT 299

Query: 1085 LRLSDDSIEV 1114
            L LS ++++V
Sbjct: 300  LYLSANTLQV 309


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